BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0233.7
(482 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV425218 142 2e-34
BP038017 111 2e-25
TC12114 weakly similar to GB|BAC16510.1|23237937|AP005198 transp... 71 3e-13
CN825057 62 3e-10
CB827002 58 3e-09
TC16246 weakly similar to UP|Q8S2M2 (Q8S2M2) Far-red impaired re... 40 0.001
AV423237 32 0.18
AV772420 27 5.7
AV766619 27 7.4
BI417933 27 9.7
TC17177 homologue to UP|GAPN_PEA (P81406) NADP-dependent glycera... 27 9.7
TC17786 similar to PIR|T46177|T46177 villin 3 homolog T8H10.10 -... 27 9.7
TC17583 weakly similar to UP|Q9LIE5 (Q9LIE5) Far-red impaired re... 27 9.7
>AV425218
Length = 419
Score = 142 bits (357), Expect = 2e-34
Identities = 64/132 (48%), Positives = 93/132 (69%)
Frame = +2
Query: 238 VGVNHHGQSILFGCGLLSRKDKETYVWLFKS*LECMRGRAPKAIITYQCRSIQAAVVEVF 297
VGVNHHGQS+LFGC LLS +D E++VWLF+S L CM G P+ IIT +++ A+ V
Sbjct: 20 VGVNHHGQSVLFGCALLSSEDSESFVWLFQSLLHCMSGVPPQGIITDHSEAMKKAIETVL 199
Query: 298 SESHHRFCFWHIMKKVPEKLNGLTQYKEIKKTLKTLVYDSIEASEFDDG*HKMIEDYRLQ 357
+ HR+C +IMKK+P+KL G QY+ I+ L+ +VYD++ EF+ K++ED+ L+
Sbjct: 200 PSTRHRWCLSYIMKKLPQKLLGYAQYESIRHHLQNVVYDAVVIDEFERNWKKIVEDFGLE 379
Query: 358 ENEWLSSLFSDR 369
+NEWL+ LF +R
Sbjct: 380 DNEWLNELFLER 415
>BP038017
Length = 570
Score = 111 bits (278), Expect = 2e-25
Identities = 52/100 (52%), Positives = 70/100 (70%)
Frame = +2
Query: 201 VFWVDARSRAAYDSFEDVVSFDSTYLTNR*NMSFSPFVGVNHHGQSILFGCGLLSRKDKE 260
VFW DARSR+AY+ F D V FD+ Y N+ + F+PF GVNHHGQ++LFGC LL + +
Sbjct: 266 VFWADARSRSAYNYFGDAVIFDTMYRPNQYQVPFAPFTGVNHHGQNVLFGCALLLDESES 445
Query: 261 TYVWLFKS*LECMRGRAPKAIITYQCRSIQAAVVEVFSES 300
++ WLF++ L M R P +I T Q R+IQAAV +VF E+
Sbjct: 446 SFTWLFRTWLSAMNDRPPVSITTDQDRAIQAAVAQVFPET 565
>TC12114 weakly similar to GB|BAC16510.1|23237937|AP005198 transposase-like
{Oryza sativa (japonica cultivar-group);}, partial (8%)
Length = 488
Score = 71.2 bits (173), Expect = 3e-13
Identities = 35/71 (49%), Positives = 45/71 (63%)
Frame = +1
Query: 201 VFWVDARSRAAYDSFEDVVSFDSTYLTNR*NMSFSPFVGVNHHGQSILFGCGLLSRKDKE 260
VFWVDAR Y F D+VS DSTY T+ N + F G NHH ++++FG LL + E
Sbjct: 142 VFWVDARMLIDYGYFGDMVSLDSTYCTHSSNRPLAVFSGFNHHRKAVIFGAALLYDETTE 321
Query: 261 TYVWLFKS*LE 271
+Y WLF+S LE
Sbjct: 322 SY*WLFESFLE 354
>CN825057
Length = 721
Score = 61.6 bits (148), Expect = 3e-10
Identities = 27/48 (56%), Positives = 36/48 (74%)
Frame = +1
Query: 201 VFWVDARSRAAYDSFEDVVSFDSTYLTNR*NMSFSPFVGVNHHGQSIL 248
+FW+DA+S Y SF DVVSFD++Y+ + + F+PFVGVNHH Q IL
Sbjct: 577 IFWIDAKSINDYLSFNDVVSFDTSYIKSNEKLPFAPFVGVNHHCQPIL 720
>CB827002
Length = 534
Score = 58.2 bits (139), Expect = 3e-09
Identities = 26/48 (54%), Positives = 39/48 (81%)
Frame = +1
Query: 357 QENEWLSSLFSDRRRWVPIYVKSIFWAGMSTTQRSESMNAFFDGYVNS 404
Q++EWLS L+S R+ P++++ F+A MS TQRS+SMN++FDGYVN+
Sbjct: 28 QDHEWLS-LYSSCRQGAPVHLRDTFFAEMSITQRSDSMNSYFDGYVNA 168
>TC16246 weakly similar to UP|Q8S2M2 (Q8S2M2) Far-red impaired response
protein-like, partial (4%)
Length = 660
Score = 39.7 bits (91), Expect = 0.001
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +2
Query: 199 EMVFWVDARSRAAYDSFEDVVSFDSTYLTNR*NMSFSPFVGV 240
E +FW D SR Y+ F DV++FDSTY N+ N F+ V
Sbjct: 242 ENLFWCDGVSRMDYNVFGDVIAFDSTYKKNKYNKPLVVFLHV 367
>AV423237
Length = 310
Score = 32.3 bits (72), Expect = 0.18
Identities = 17/28 (60%), Positives = 18/28 (63%), Gaps = 2/28 (7%)
Frame = +3
Query: 225 YLTNR*NMSFSPFV--GVNHHGQSILFG 250
YLT * SPF GVNHHGQ +LFG
Sbjct: 63 YLTQL*ITISSPFALHGVNHHGQPVLFG 146
>AV772420
Length = 454
Score = 27.3 bits (59), Expect = 5.7
Identities = 15/36 (41%), Positives = 21/36 (57%), Gaps = 1/36 (2%)
Frame = +2
Query: 347 *HKMIEDYRLQENEWLSSLFSDRRRW-VPIYVKSIF 381
*+K EDY L ++ W + R+W + IYVK IF
Sbjct: 101 *YKDREDYTLTKSLWRKTNLKYGRKWRIQIYVKIIF 208
>AV766619
Length = 412
Score = 26.9 bits (58), Expect = 7.4
Identities = 8/31 (25%), Positives = 20/31 (63%)
Frame = +2
Query: 289 IQAAVVEVFSESHHRFCFWHIMKKVPEKLNG 319
++ ++ E+F + HH +C ++ +K+ + L G
Sbjct: 50 LKKSLSEIFEKCHHSYCLRYLAEKLNKDLKG 142
>BI417933
Length = 568
Score = 26.6 bits (57), Expect = 9.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 175 TSLACNEEIQIFSMTLIWMTPVIC 198
T+L + I +FS ++W TP+IC
Sbjct: 267 TNLLDMKSIMLFSCKILWGTPLIC 338
>TC17177 homologue to UP|GAPN_PEA (P81406) NADP-dependent
glyceraldehyde-3-phosphate dehydrogenase
(Non-phosphorylating glyceraldehyde 3-phosphate
dehydrogenase) (Glyceraldehyde-3-phosphate dehydrogenase
[NADP+]) (Triosephosphate dehydrogenase) , partial (40%)
Length = 689
Score = 26.6 bits (57), Expect = 9.7
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = -2
Query: 65 QNRLS-SKNMCDCPQWWKVYYFFVFI--WIIIMF 95
+N++S S N+C+C W Y+F + WI ++F
Sbjct: 436 RNQISRSYNLCNCIFGWLCYFFHQALCNWIFVLF 335
>TC17786 similar to PIR|T46177|T46177 villin 3 homolog T8H10.10 - Arabidopsis
thaliana (fragment) {Arabidopsis thaliana;}, partial
(42%)
Length = 1228
Score = 26.6 bits (57), Expect = 9.7
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +2
Query: 76 CPQWWKVYYFFVFIW 90
CP WWKV F V W
Sbjct: 1094 CPVWWKVELF*VHYW 1138
>TC17583 weakly similar to UP|Q9LIE5 (Q9LIE5) Far-red impaired response
protein, mutator-like transposase-like protein,
phytochrome A signaling protein-like, partial (3%)
Length = 666
Score = 26.6 bits (57), Expect = 9.7
Identities = 11/17 (64%), Positives = 13/17 (75%)
Frame = +3
Query: 212 YDSFEDVVSFDSTYLTN 228
Y+ F DVVS D+TY TN
Sbjct: 18 YEYFGDVVSLDTTYSTN 68
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.358 0.160 0.581
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,815,080
Number of Sequences: 28460
Number of extensions: 120599
Number of successful extensions: 1572
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 381
Number of HSP's gapped (non-prelim): 1236
length of query: 482
length of database: 4,897,600
effective HSP length: 94
effective length of query: 388
effective length of database: 2,222,360
effective search space: 862275680
effective search space used: 862275680
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0233.7