TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0233.16
         (1520 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8084 similar to UP|PIF1_YEAST (P07271) DNA repair and recombin...   156  2e-38
BP046665                                                              156  3e-38
TC15490 weakly similar to UP|Q9LTU4 (Q9LTU4) Helicase-like prote...   127  2e-36
BP085968                                                               86  2e-28
AU089042                                                              105  7e-23
TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination p...    81  2e-22
BP065488                                                               84  1e-16
TC14212 similar to UP|Q9FN61 (Q9FN61) Gb|AAF07369.1, partial (10%)     59  8e-09
TC11129 weakly similar to UP|PDA6_MEDSA (P38661) Probable protei...    55  8e-08
TC17501                                                                33  0.34
TC15676 similar to GB|AAG24281.1|10880503|AF195894 arabinogalact...    30  2.9
TC15212 homologue to UP|TBB7_MAIZE (Q41784) Tubulin beta-7 chain...    30  3.7
TC19375                                                                29  4.9
TC15596 similar to UP|AAR08678 (AAR08678) EIN2, partial (4%)           29  4.9
TC9013                                                                 29  4.9
BP063650                                                               27  5.3

>TC8084 similar to UP|PIF1_YEAST (P07271) DNA repair and recombination
            protein PIF1, mitochondrial precursor, partial (4%)
          Length = 560

 Score =  156 bits (395), Expect = 2e-38
 Identities = 76/129 (58%), Positives = 101/129 (77%)
 Frame = +1

Query: 1391 LCNGTRLIVDYLGPNVIGAIVLSGTHIGKVVYISRMNLMPSDESMPVKFQRRQFPLIASF 1450
            LCNGTRLIV  LG  VI A V++GT+IG  ++I R++++PSD   P KF+RR FP+   F
Sbjct: 61   LCNGTRLIVVDLGTYVIKATVITGTNIGDDIFIPRLDMVPSDSGYPFKFERR*FPISLCF 240

Query: 1451 AMTINKSQGQSLSQVGVYLPKPVFSHGQLYVAISRVKSRAGLKILICNEDTSQLDVTKNI 1510
            AMTINKSQGQSLS V +YL +PVF+HGQLYVA+SRV+SR GLK+L+ +E+    + TKN+
Sbjct: 241  AMTINKSQGQSLSHVSLYLSRPVFTHGQLYVALSRVRSRKGLKLLVLDEEEKVTNTTKNV 420

Query: 1511 VFQEVFQKI 1519
            V++EVF+ I
Sbjct: 421  VYREVFENI 447


>BP046665 
          Length = 524

 Score =  156 bits (394), Expect = 3e-38
 Identities = 77/130 (59%), Positives = 101/130 (77%), Gaps = 1/130 (0%)
 Frame = -1

Query: 1361 LKCSGMPDHKLVLKEGAPIMLMRNLDISTGLCNGTRLIVDYLGPNVIGAIVLSGTHIGKV 1420
            + C G+P+HK+ LKEGAPIML+RN+  + G CNGTRLIV  LG NVI A V++ T+IG  
Sbjct: 521  ITCFGIPNHKITLKEGAPIMLLRNIYQAVGFCNGTRLIVADLGTNVIKATVIT*TNIGDD 342

Query: 1421 VYISRMNLMPSDESMPVKFQRRQFPLIASFAMTINKSQGQSLSQVGVYLPKPVFSHGQLY 1480
            ++I RM+++PSD   P KF+RRQFP+    AMTINKSQGQSLS VG+YL + VF+HGQLY
Sbjct: 341  IFIPRMDMVPSDSGYPFKFERRQFPISLCSAMTINKSQGQSLSHVGLYLSRHVFTHGQLY 162

Query: 1481 VAI-SRVKSR 1489
            VA+ +++K R
Sbjct: 161  VALHAKIKKR 132



 Score = 34.7 bits (78), Expect = 0.12
 Identities = 15/45 (33%), Positives = 28/45 (61%)
 Frame = -2

Query: 1468 YLPKPVFSHGQLYVAISRVKSRAGLKILICNEDTSQLDVTKNIVF 1512
            Y+   ++SH      +S ++SR GLK+L+ +E+    + TKN+V+
Sbjct: 202  YIFLAMYSHMVSCTLLSMLRSRKGLKLLVLDEEEKVTNTTKNVVY 68


>TC15490 weakly similar to UP|Q9LTU4 (Q9LTU4) Helicase-like protein, partial
            (8%)
          Length = 634

 Score =  127 bits (320), Expect(2) = 2e-36
 Identities = 61/113 (53%), Positives = 85/113 (74%)
 Frame = +2

Query: 1407 IGAIVLSGTHIGKVVYISRMNLMPSDESMPVKFQRRQFPLIASFAMTINKSQGQSLSQVG 1466
            I   V++GTHIG  + I RM+++PSD S P KF+RRQ P+   FAMTINKSQG+SLS VG
Sbjct: 137  IQVTVITGTHIGDDISIPRMDMVPSDSSYPFKFERRQSPISLCFAMTINKSQGRSLSHVG 316

Query: 1467 VYLPKPVFSHGQLYVAISRVKSRAGLKILICNEDTSQLDVTKNIVFQEVFQKI 1519
            +YL +PV +HG LYVA+ RV+SR  LK+L+ +E+    + TKN+V++E+F+ I
Sbjct: 317  LYLSRPVSTHG*LYVALPRVRSRK*LKLLVLDEEEKMTNTTKNVVYREIFENI 475



 Score = 43.5 bits (101), Expect(2) = 2e-36
 Identities = 22/32 (68%), Positives = 26/32 (80%)
 Frame = +1

Query: 1374 KEGAPIMLMRNLDISTGLCNGTRLIVDYLGPN 1405
            KEGA IML+RN+  ++GLCNGTRLIV  LG N
Sbjct: 43   KEGALIMLLRNIVQASGLCNGTRLIVVDLGIN 138


>BP085968 
          Length = 341

 Score = 85.5 bits (210), Expect(2) = 2e-28
 Identities = 37/65 (56%), Positives = 56/65 (85%)
 Frame = +2

Query: 1042 QLKIYQEIITAINANNGGFFFVYGYGGTGKTFLWKTLTYKLRSQKQIILNVASSGIASLL 1101
            Q K+Y++I++++ +++GGF+F+YG+GG+GKTF+W T +  LRSQ  ++LNVASSGIAS L
Sbjct: 20   QSKVYKQIMSSVWSDDGGFYFLYGFGGSGKTFVWNTWSSGLRSQGLMVLNVASSGIASWL 199

Query: 1102 LPGGR 1106
            LPGG+
Sbjct: 200  LPGGK 214



 Score = 58.9 bits (141), Expect(2) = 2e-28
 Identities = 29/43 (67%), Positives = 33/43 (76%)
 Frame = +3

Query: 1106 RTAHSLFSIPLCLNEDSCCGIPQGSPKAKLLQLASLIIWDEAP 1148
            RTAHS FSI + +N+ S C I QGS KA+LLQ AS IIWDEAP
Sbjct: 213  RTAHSRFSIHISINDISTCNIKQGSQKAELLQKASSIIWDEAP 341


>AU089042 
          Length = 191

 Score =  105 bits (261), Expect = 7e-23
 Identities = 51/61 (83%), Positives = 53/61 (86%)
 Frame = +3

Query: 1372 VLKEGAPIMLMRNLDISTGLCNGTRLIVDYLGPNVIGAIVLSGTHIGKVVYISRMNLMPS 1431
            VLK G P+MLM NL ISTGLCNGTRLIVDYLGPNVIGA +LSGTHIG VVYIS MNL PS
Sbjct: 6    VLKXGVPVMLMXNLXISTGLCNGTRLIVDYLGPNVIGATILSGTHIGXVVYISMMNLXPS 185

Query: 1432 D 1432
            D
Sbjct: 186  D 188


>TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination protein
            DMC1/LIM15 homolog, partial (12%)
          Length = 628

 Score = 81.3 bits (199), Expect(2) = 2e-22
 Identities = 40/69 (57%), Positives = 52/69 (74%)
 Frame = +1

Query: 1391 LCNGTRLIVDYLGPNVIGAIVLSGTHIGKVVYISRMNLMPSDESMPVKFQRRQFPLIASF 1450
            LC+GTRLIV  LG  VI A V++GT+IG  ++I R++++PSD   P KF+RR FP+   F
Sbjct: 169  LCHGTRLIVVDLGTYVIKATVITGTNIGDDIFIPRLDMVPSDSGYPFKFERR*FPISLCF 348

Query: 1451 AMTINKSQG 1459
            AMTINKSQG
Sbjct: 349  AMTINKSQG 375



 Score = 42.7 bits (99), Expect(2) = 2e-22
 Identities = 18/36 (50%), Positives = 28/36 (77%)
 Frame = +3

Query: 1484 SRVKSRAGLKILICNEDTSQLDVTKNIVFQEVFQKI 1519
            SRV+SR GLK+L+ +E+    + TKN+V++EVF+ I
Sbjct: 369  SRVRSRKGLKLLVLDEEEKVTNTTKNVVYREVFENI 476


>BP065488 
          Length = 439

 Score = 84.3 bits (207), Expect = 1e-16
 Identities = 48/104 (46%), Positives = 66/104 (63%), Gaps = 2/104 (1%)
 Frame = -1

Query: 1418 GKVVYISRMNLMPSDESMPVKFQRRQFPLIASFAMTINKSQGQ-SLSQVGVYLPKPVFSH 1476
            G  ++I RMN++PS    P+KF+R QFP+   FAMTINKSQ       V +      +SH
Sbjct: 379  GDDIFIPRMNMVPSVSGDPLKFERCQFPISLCFAMTINKSQXSVHYPTVALISFLACYSH 200

Query: 1477 -GQLYVAISRVKSRAGLKILICNEDTSQLDVTKNIVFQEVFQKI 1519
              +LYVA+S V+SR GLK+L+  E+    + TKN V+QEVF+ I
Sbjct: 199  MDKLYVALSGVRSRKGLKLLVLGEEEKVTNATKNEVYQEVFKNI 68


>TC14212 similar to UP|Q9FN61 (Q9FN61) Gb|AAF07369.1, partial (10%)
          Length = 613

 Score = 58.5 bits (140), Expect = 8e-09
 Identities = 29/42 (69%), Positives = 35/42 (83%)
 Frame = +2

Query: 1479 LYVAISRVKSRAGLKILICNEDTSQLDVTKNIVFQEVFQKIY 1520
            LYVA+SRVKS+ GLKILI ++ TS    TKNIV++EVFQKIY
Sbjct: 2    LYVAVSRVKSKDGLKILISSDGTSTPGATKNIVYKEVFQKIY 127


>TC11129 weakly similar to UP|PDA6_MEDSA (P38661) Probable protein disulfide
            isomerase A6 precursor  (P5) , partial (7%)
          Length = 600

 Score = 55.1 bits (131), Expect = 8e-08
 Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 7/62 (11%)
 Frame = +2

Query: 1301 YYSDKAILA-------PTLDAVDSINQYALSLFPGNEKTYLSSDSVWRVDEDVGIEADWL 1353
            YY+D  +++       PTL++V+ +N++ L L PGN   YLSSD+  + DED  +++ W 
Sbjct: 410  YYADGGVISLVMY*IFPTLESVEKVNEFMLDLLPGNTTEYLSSDTTCKYDEDTELQS*WF 589

Query: 1354 TT 1355
            TT
Sbjct: 590  TT 595


>TC17501 
          Length = 981

 Score = 33.1 bits (74), Expect = 0.34
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -3

Query: 1266 VQIPKDLLIYQSSNPIADIVHLMYPDIVQN 1295
            + + K  L+++SSN +A I+H+ YP + QN
Sbjct: 850  INVSK*QLLFRSSNKVATIIHVTYPTVYQN 761


>TC15676 similar to GB|AAG24281.1|10880503|AF195894 arabinogalactan protein
           {Arabidopsis thaliana;} , partial (49%)
          Length = 877

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 467 EGLFLWESCCRFVLCLCYII*YLISLYAIHFYNQSIIYCH 506
           E L LW   C   + + +   Y+IS+  I F+  +   CH
Sbjct: 259 ENLLLWSLICAEAILVTFFFFYIISIIMIQFFLCNTFICH 378


>TC15212 homologue to UP|TBB7_MAIZE (Q41784) Tubulin beta-7 chain (Beta-7
           tubulin), partial (30%)
          Length = 659

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 13/44 (29%), Positives = 23/44 (51%)
 Frame = +2

Query: 476 CRFVLCLCYII*YLISLYAIHFYNQSIIYCHYLFYCLGTYTIEF 519
           C    CLC +     SLY + F ++ ++  H++FY +  Y + F
Sbjct: 470 CSIQNCLCGVCMN*GSLYKLGFVDKLLLLSHWMFY*VDDYLLRF 601


>TC19375 
          Length = 384

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 16/48 (33%), Positives = 25/48 (51%)
 Frame = +2

Query: 470 FLWESCCRFVLCLCYII*YLISLYAIHFYNQSIIYCHYLFYCLGTYTI 517
           F W S C F L   +++ ++ SLY +      +IYC YLF  +  Y +
Sbjct: 221 FHWFSFCNFALL--FVVSFIPSLYFL------VIYCFYLFLVV*LYWV 340


>TC15596 similar to UP|AAR08678 (AAR08678) EIN2, partial (4%)
          Length = 702

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 20/47 (42%), Positives = 26/47 (54%), Gaps = 1/47 (2%)
 Frame = +3

Query: 450 GLPCFPYEIKSIHG*LQEGLFLWE-SCCRFVLCLCYII*YLISLYAI 495
           GL CF   +K    *++   FL++  C RF L +CYI   L SLY I
Sbjct: 234 GLFCF---VKQFML*IKNSCFLYQIPCSRFYLFVCYIQVGLESLYVI 365


>TC9013 
          Length = 766

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 1494 ILICNEDTSQLDVTKNIVFQEVFQKI 1519
            ILIC+ D S  + T N+V+ EVF+ +
Sbjct: 627  ILICDGDDSNSNSTSNVVYTEVFRTV 704


>BP063650 
          Length = 497

 Score = 26.6 bits (57), Expect(2) = 5.3
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 1191 QILPVIPKGRRAEIVMSTINSSRLWRFCKVLN 1222
            + L V+ KGR  +I+ + +N+S L   C+VL+
Sbjct: 58   KFLTVVYKGRMQDIIHAIVNASYL*DHCQVLS 153



 Score = 20.8 bits (42), Expect(2) = 5.3
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +3

Query: 1183 VVLGGDFRQI 1192
            VVL GDFRQI
Sbjct: 33   VVLQGDFRQI 62


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.359    0.162    0.586 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,647,321
Number of Sequences: 28460
Number of extensions: 420710
Number of successful extensions: 4808
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 3579
Number of HSP's successfully gapped in prelim test: 129
Number of HSP's that attempted gapping in prelim test: 1131
Number of HSP's gapped (non-prelim): 3863
length of query: 1520
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1418
effective length of database: 1,994,680
effective search space: 2828456240
effective search space used: 2828456240
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 61 (28.1 bits)