BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0233.11
(95 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18210 similar to UP|O04342 (O04342) At2g30530 protein (At2g305... 27 0.59
TC19580 similar to UP|HEM3_CHLMU (Q9PK95) Probable porphobilinog... 27 0.77
TC9660 similar to UP|O49483 (O49483) Receptor protein kinase - l... 26 1.0
TC17515 similar to UP|Q8WP00 (Q8WP00) Protamine P1, partial (36%) 26 1.0
CB828712 26 1.3
TC9588 26 1.3
TC15038 similar to UP|O04287 (O04287) Immunophilin, complete 26 1.3
AV766229 26 1.3
BP040276 25 1.7
TC19508 25 1.7
TC10588 similar to UP|Q9LPU4 (Q9LPU4) T22I11.8, partial (36%) 25 2.2
TC16440 similar to UP|Q93Y18 (Q93Y18) SNF1 related protein kinas... 25 2.2
TC7994 similar to UP|Q8RU73 (Q8RU73) Ribose-5-phosphate isomeras... 25 2.2
AV417016 25 2.2
TC19703 weakly similar to PIR|B96660|B96660 protein F2K11.18 [im... 25 2.9
TC13671 weakly similar to UP|CND0_MOUSE (Q8BU04) Protein C14orf1... 25 2.9
TC19126 similar to UP|Q8W435 (Q8W435) CYP1 (Peptidyl-prolyl cis... 25 2.9
TC14597 similar to UP|RR1_SPIOL (P29344) 30S ribosomal protein S... 24 3.8
TC9585 similar to UP|O24078 (O24078) Protein phosphatase 2C, par... 24 3.8
AW720255 24 3.8
>TC18210 similar to UP|O04342 (O04342) At2g30530 protein
(At2g30530/T6B20.12), partial (7%)
Length = 520
Score = 26.9 bits (58), Expect = 0.59
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 30 IVCSSRPQKKATAHHRKSRPRKSQPWDINRKPTVYAPL 67
++ SSRP + A HR S+ R +Q + + TV P+
Sbjct: 268 LITSSRPARTTRAKHRSSQLRPAQIRLLRHQETVPGPM 155
>TC19580 similar to UP|HEM3_CHLMU (Q9PK95) Probable porphobilinogen
deaminase (PBG) (Hydroxymethylbilane synthase) (HMBS)
(Pre-uroporphyrinogen synthase) , partial (7%)
Length = 537
Score = 26.6 bits (57), Expect = 0.77
Identities = 15/43 (34%), Positives = 20/43 (45%)
Frame = -1
Query: 33 SSRPQKKATAHHRKSRPRKSQPWDINRKPTVYAPLPPLPSDWT 75
+ R + AT+H K R + PW YA P+PS WT
Sbjct: 414 TER*TRVATSHGGKEEIR-ALPWSPQASRRFYAHSLPVPSPWT 289
>TC9660 similar to UP|O49483 (O49483) Receptor protein kinase - like
protein (Receptor protein kinase-like protein), partial
(12%)
Length = 1022
Score = 26.2 bits (56), Expect = 1.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 24 RRGNGVIVCSSRPQKKATAHH 44
+ GN CSSRPQ ++HH
Sbjct: 529 QHGNAHPQCSSRPQSSISSHH 591
>TC17515 similar to UP|Q8WP00 (Q8WP00) Protamine P1, partial (36%)
Length = 546
Score = 26.2 bits (56), Expect = 1.0
Identities = 17/67 (25%), Positives = 23/67 (33%)
Frame = -2
Query: 19 PPQMERRGNGVIVCSSRPQKKATAHHRKSRPRKSQPWDINRKPTVYAPLPPLPSDWTLVV 78
PPQ + + G + K S R PW NR PP P WT +
Sbjct: 254 PPQGQPQAPGSTPTPTLRGKSQRHSPTNSATRAPPPWKTNRASRSKKA*PPTPPLWTAAL 75
Query: 79 SAADASS 85
+ S+
Sbjct: 74 LSRRCSA 54
>CB828712
Length = 532
Score = 25.8 bits (55), Expect = 1.3
Identities = 19/62 (30%), Positives = 24/62 (38%)
Frame = -3
Query: 32 CSSRPQKKATAHHRKSRPRKSQPWDINRKPTVYAPLPPLPSDWTLVVSAADASSDEAVAV 91
CS+ ATA H S P S + P PP P + ASS E ++
Sbjct: 323 CSTGLGPSATAAHCSSPPPTSSSAHTSHHQPPPPPPPPSP*PAAYYSAGQAASSAENCSI 144
Query: 92 TP 93
TP
Sbjct: 143 TP 138
>TC9588
Length = 644
Score = 25.8 bits (55), Expect = 1.3
Identities = 23/102 (22%), Positives = 38/102 (36%), Gaps = 10/102 (9%)
Frame = +1
Query: 1 MSVLSSCSSIFGVAMAAAPPQMERRGNGVIVCSSRPQKKATAHHRKSRPRKSQPWDIN-- 58
+ V +S + G P Q G + +PQ + HHR + + Q D N
Sbjct: 34 LKVKNSMAKTNGGHAQMKPQQKHLNGKRLATIQEQPQSVSNGHHRLQQNVEQQQRDSNGN 213
Query: 59 --------RKPTVYAPLPPLPSDWTLVVSAADASSDEAVAVT 92
K + LPPL + V++ +SS + +T
Sbjct: 214 SNSEVVVTTKWETFDSLPPL-----IPVTSTSSSSTSSSVMT 324
>TC15038 similar to UP|O04287 (O04287) Immunophilin, complete
Length = 602
Score = 25.8 bits (55), Expect = 1.3
Identities = 12/32 (37%), Positives = 17/32 (52%)
Frame = -1
Query: 46 KSRPRKSQPWDINRKPTVYAPLPPLPSDWTLV 77
+SR + Q WD R TV +PLP + T +
Sbjct: 131 QSRSDREQAWDRFRASTVASPLPSTTTTTTTI 36
>AV766229
Length = 571
Score = 25.8 bits (55), Expect = 1.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 18 APPQMERRGNGVIVCSSRPQKKATAHHRKSR 48
A P RRG + +CS R +++ R+SR
Sbjct: 425 ASPPYRRRGECLPLCSPRERRRGRIRERRSR 517
>BP040276
Length = 556
Score = 25.4 bits (54), Expect = 1.7
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 69 PLPSDWTLVVS-AADASSDEAVAVTPSA 95
P PS W+ +VS AA SS AV+V+ S+
Sbjct: 148 PSPSPWSQIVSAAAPPSSPPAVSVSDSS 231
>TC19508
Length = 584
Score = 25.4 bits (54), Expect = 1.7
Identities = 15/42 (35%), Positives = 19/42 (44%)
Frame = +1
Query: 25 RGNGVIVCSSRPQKKATAHHRKSRPRKSQPWDINRKPTVYAP 66
R NG S PQ+ HH +S+P K + I R P P
Sbjct: 76 RRNGRCHGLSPPQRWLLRHHLRSQPIKMSSFTIPRCPCCQFP 201
>TC10588 similar to UP|Q9LPU4 (Q9LPU4) T22I11.8, partial (36%)
Length = 976
Score = 25.0 bits (53), Expect = 2.2
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +2
Query: 29 VIVCSSRPQKKATAHHRKSRPRKSQPWDINRKPTVYAPLPPLPSDWTLVVSAADASSDEA 88
+++ S K TA SR R + I+ KP +++P+PPLP + ++ ++S
Sbjct: 134 LVILSFSSTSKITAS-TFSRTRMPSIFAISPKP-LFSPIPPLPPTRGIHLALVSSTSPST 307
Query: 89 VA 90
+A
Sbjct: 308 MA 313
>TC16440 similar to UP|Q93Y18 (Q93Y18) SNF1 related protein kinase, partial
(30%)
Length = 549
Score = 25.0 bits (53), Expect = 2.2
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +3
Query: 14 AMAAAPPQMER--RGNGVIVCSSRPQKKATAHHRKSRPRKSQPWDINRKPTVYAPLPPL 70
A APP+ + RG+G Q + H R R R++ D+ +P AP PPL
Sbjct: 249 ATPPAPPEHPQNPRGHG-------HQDQDLPHRRLRRRRRALLQDLPPRPPPGAPRPPL 404
>TC7994 similar to UP|Q8RU73 (Q8RU73) Ribose-5-phosphate isomerase
precursor , partial (81%)
Length = 1355
Score = 25.0 bits (53), Expect = 2.2
Identities = 24/96 (25%), Positives = 32/96 (33%), Gaps = 26/96 (27%)
Frame = -2
Query: 5 SSCSSIFGVAMAAAPPQMERRGNGVI--------VCSSRPQKKATAHHR---------KS 47
S C+S A P RRG + +C +RP+ + R K
Sbjct: 844 SDCTSSRTAPPPPASPARSRRGRRRVWCRRRRLRICQTRPRPSSPGEERRRDP*RG*GKG 665
Query: 48 RPRKSQPW-----DINRKPTV----YAPLPPLPSDW 74
RPR+ + W D R AP PP W
Sbjct: 664 RPRRRRRWRDRGGDCRRGRRAGCRGIAPAPPCAWRW 557
>AV417016
Length = 173
Score = 25.0 bits (53), Expect = 2.2
Identities = 16/51 (31%), Positives = 24/51 (46%)
Frame = +3
Query: 45 RKSRPRKSQPWDINRKPTVYAPLPPLPSDWTLVVSAADASSDEAVAVTPSA 95
R+ P +PW +P +P PPL S L +A ++ A +TP A
Sbjct: 21 RRCPPFPLRPWSWQVRPCRPSPYPPLVSTAGLPSVSAAPAAAAAGWLTPVA 173
>TC19703 weakly similar to PIR|B96660|B96660 protein F2K11.18 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(5%)
Length = 554
Score = 24.6 bits (52), Expect = 2.9
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Frame = -1
Query: 24 RRGNGVIVCS------SRPQKKATAHHRKSRPRKSQPWDINRKP 61
RR GV++C+ PQ++ AHH ++ + RKP
Sbjct: 299 RRCLGVVLCAWHLGRLVHPQRQRAAHHTQAGGAHGNGRHVGRKP 168
>TC13671 weakly similar to UP|CND0_MOUSE (Q8BU04) Protein C14orf130 homolog,
partial (23%)
Length = 583
Score = 24.6 bits (52), Expect = 2.9
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 49 PRKSQPWDINRKPTVYAPLPPLPSDWTLVVSAADASS 85
P + P +NR P AP+P LP ++ +V A ASS
Sbjct: 213 PCQHHPPQLNRLP---APVPLLPLMYSPMVIACSASS 112
>TC19126 similar to UP|Q8W435 (Q8W435) CYP1 (Peptidyl-prolyl cis-trans
isomerase) (PPIase) (Rotamase) , partial (39%)
Length = 277
Score = 24.6 bits (52), Expect = 2.9
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Frame = -1
Query: 12 GVAMAAAPPQMERRGNGVIVCSSRP------QKKATAHHRKSRPRKSQPW 55
G+ AP + +RRG C SRP Q+K+ + K + +K + W
Sbjct: 154 GLRRRKAP*RCDRRGGHRWSCRSRP*GLT*LQRKSESITVKKKKKKKKIW 5
>TC14597 similar to UP|RR1_SPIOL (P29344) 30S ribosomal protein S1,
chloroplast precursor (CS1), partial (59%)
Length = 866
Score = 24.3 bits (51), Expect = 3.8
Identities = 17/44 (38%), Positives = 20/44 (44%), Gaps = 3/44 (6%)
Frame = +3
Query: 2 SVLSSCSSIFGVAMAAAPPQMERRGNGVIVCS---SRPQKKATA 42
SV S++ M Q +RRG G IVCS S Q K A
Sbjct: 57 SVAQQLSAVRWSPMLWRRSQKQRRGAGTIVCSVAISNAQNKERA 188
>TC9585 similar to UP|O24078 (O24078) Protein phosphatase 2C, partial (31%)
Length = 502
Score = 24.3 bits (51), Expect = 3.8
Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = +2
Query: 12 GVAMA-AAPPQMERRGNGVIVC 32
GV++A A PPQ +R +GV++C
Sbjct: 161 GVSLAHALPPQAQRVFHGVVLC 226
>AW720255
Length = 532
Score = 24.3 bits (51), Expect = 3.8
Identities = 11/15 (73%), Positives = 12/15 (79%)
Frame = +3
Query: 40 ATAHHRKSRPRKSQP 54
ATA +R SRP KSQP
Sbjct: 51 ATAPNRHSRPLKSQP 95
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.314 0.124 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,042,584
Number of Sequences: 28460
Number of extensions: 29547
Number of successful extensions: 254
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of query: 95
length of database: 4,897,600
effective HSP length: 71
effective length of query: 24
effective length of database: 2,876,940
effective search space: 69046560
effective search space used: 69046560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)
Lotus: description of TM0233.11