TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0229.10
         (277 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV780009                                                               39  7e-04
TC11322 homologue to UP|Q9ASX2 (Q9ASX2) At1g07440/F22G5_16, part...    28  1.3
BP056758                                                               28  1.7
AV766665                                                               27  2.9
BP066094                                                               27  2.9

>AV780009 
          Length = 529

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = -1

Query: 176 LIFWRS*KQTVVSGSSSEAEYRSLGLSSC 204
           LI WR+ KQT VS SSSEAEYR+L  + C
Sbjct: 361 LISWRTKKQTTVSRSSSEAEYRALAATVC 275


>TC11322 homologue to UP|Q9ASX2 (Q9ASX2) At1g07440/F22G5_16, partial (11%)
          Length = 436

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 11/35 (31%), Positives = 19/35 (53%)
 Frame = -1

Query: 51  QFRYIRDL*AKVNISYGEKLQIPHNRGCSFYGSIA 85
           + R +RD+ +  N  +G K      RGC ++ +IA
Sbjct: 109 RLRGVRDMISSTNFGFGNKCSTSGGRGCPWHNTIA 5


>BP056758 
          Length = 417

 Score = 28.1 bits (61), Expect = 1.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 113 HDSHRTAINASSTNSKAMSLLASSQ 137
           HD HRT  N +  N+  MS +AS++
Sbjct: 47  HDRHRTTCNTTKGNNHIMSCIASTE 121


>AV766665 
          Length = 601

 Score = 27.3 bits (59), Expect = 2.9
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 176 LIFWRS*KQTVVSGSSSEAEYRS 198
           L+ WRS +Q +++ SS EAE R+
Sbjct: 528 LVTWRSKQQNIIARSSGEAELRA 596


>BP066094 
          Length = 532

 Score = 27.3 bits (59), Expect = 2.9
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 1   DIIITGSSSALMNNFISKLNLVFLLKQLG*LEHFLGIE 38
           DII   ++ +L   F   +   F ++ +G L++FLGI+
Sbjct: 419 DIIFGSANPSLCKEFSEMMQAEFEMRMMGELKYFLGIQ 532


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.348    0.152    0.497 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,143,453
Number of Sequences: 28460
Number of extensions: 76202
Number of successful extensions: 569
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of query: 277
length of database: 4,897,600
effective HSP length: 89
effective length of query: 188
effective length of database: 2,364,660
effective search space: 444556080
effective search space used: 444556080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 54 (25.4 bits)