TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0227.9
         (273 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8429 weakly similar to UP|BAD03306 (BAD03306) MAP3K-like prote...   572  e-164
BP063326                                                              162  4e-41
AV770798                                                              112  5e-26
AW719881                                                               88  2e-18
BP053195                                                               37  0.004
TC10053 similar to UP|CHLI_SOYBN (P93162) Magnesium-chelatase su...    28  2.2
BP065238                                                               27  3.7
AV425818                                                               27  4.9
BP064555                                                               26  6.4

>TC8429 weakly similar to UP|BAD03306 (BAD03306) MAP3K-like protein kinase,
           partial (55%)
          Length = 1298

 Score =  572 bits (1475), Expect = e-164
 Identities = 273/273 (100%), Positives = 273/273 (100%)
 Frame = +3

Query: 1   MELPFNEYSWLTTHNSFAAKGVNWSTGSPVLAFTNQEDSITDQLKNGVRGLMLDMWDYED 60
           MELPFNEYSWLTTHNSFAAKGVNWSTGSPVLAFTNQEDSITDQLKNGVRGLMLDMWDYED
Sbjct: 276 MELPFNEYSWLTTHNSFAAKGVNWSTGSPVLAFTNQEDSITDQLKNGVRGLMLDMWDYED 455

Query: 61  TIWLCRGPCTKYTTFQPALNVLKEVRVFLVTHPTEIITIFIDDHVTSGNGVNKVFDKARL 120
           TIWLCRGPCTKYTTFQPALNVLKEVRVFLVTHPTEIITIFIDDHVTSGNGVNKVFDKARL
Sbjct: 456 TIWLCRGPCTKYTTFQPALNVLKEVRVFLVTHPTEIITIFIDDHVTSGNGVNKVFDKARL 635

Query: 121 RKFWFPVSKMPKNGSDWPTVKTMIRKNYRLIVFTSNASREASEGIAYEWNYVVESQFGNV 180
           RKFWFPVSKMPKNGSDWPTVKTMIRKNYRLIVFTSNASREASEGIAYEWNYVVESQFGNV
Sbjct: 636 RKFWFPVSKMPKNGSDWPTVKTMIRKNYRLIVFTSNASREASEGIAYEWNYVVESQFGNV 815

Query: 181 GIKGGSCQNRPESLPMNNATKSLVLMNYFRNVRNHDDEACRDNSSPLIAMMHVCFRAAGN 240
           GIKGGSCQNRPESLPMNNATKSLVLMNYFRNVRNHDDEACRDNSSPLIAMMHVCFRAAGN
Sbjct: 816 GIKGGSCQNRPESLPMNNATKSLVLMNYFRNVRNHDDEACRDNSSPLIAMMHVCFRAAGN 995

Query: 241 RWPNFIAVDFYKRGDGGGAPEALDLANRNLIRL 273
           RWPNFIAVDFYKRGDGGGAPEALDLANRNLIRL
Sbjct: 996 RWPNFIAVDFYKRGDGGGAPEALDLANRNLIRL 1094


>BP063326 
          Length = 492

 Score =  162 bits (411), Expect = 4e-41
 Identities = 75/75 (100%), Positives = 75/75 (100%)
 Frame = -3

Query: 178 GNVGIKGGSCQNRPESLPMNNATKSLVLMNYFRNVRNHDDEACRDNSSPLIAMMHVCFRA 237
           GNVGIKGGSCQNRPESLPMNNATKSLVLMNYFRNVRNHDDEACRDNSSPLIAMMHVCFRA
Sbjct: 394 GNVGIKGGSCQNRPESLPMNNATKSLVLMNYFRNVRNHDDEACRDNSSPLIAMMHVCFRA 215

Query: 238 AGNRWPNFIAVDFYK 252
           AGNRWPNFIAVDFYK
Sbjct: 214 AGNRWPNFIAVDFYK 170


>AV770798 
          Length = 503

 Score =  112 bits (281), Expect = 5e-26
 Identities = 54/96 (56%), Positives = 67/96 (69%), Gaps = 3/96 (3%)
 Frame = +1

Query: 3   LPFNEYSWLTTHNSFAAKGVNWSTGSPVLAFTNQEDSITDQLKNGVRGLMLDMWDYEDTI 62
           LPFN+Y++LTTHN+FA  G    TG P L   NQEDS+T QLKNG RGLMLD +DY+  +
Sbjct: 214 LPFNKYAFLTTHNAFAMDGEPSHTGVPRLTIINQEDSVTQQLKNGGRGLMLDTYDYDGDV 393

Query: 63  WLC---RGPCTKYTTFQPALNVLKEVRVFLVTHPTE 95
           WLC   +G C  YT F+PA++ LKEV  FL  +P E
Sbjct: 394 WLCHSFQGKCHDYTAFEPAIDTLKEVAAFLSANPKE 501


>AW719881 
          Length = 495

 Score = 87.8 bits (216), Expect = 2e-18
 Identities = 38/62 (61%), Positives = 49/62 (78%)
 Frame = +1

Query: 3   LPFNEYSWLTTHNSFAAKGVNWSTGSPVLAFTNQEDSITDQLKNGVRGLMLDMWDYEDTI 62
           LPFN YSWLT+HNSFA  G   +TGS ++A  NQ+D++  QLKNGVRG MLDM+D+++ I
Sbjct: 310 LPFNRYSWLTSHNSFAQAGARSATGSFIIAPMNQDDTVAQQLKNGVRGFMLDMYDFQNDI 489

Query: 63  WL 64
           WL
Sbjct: 490 WL 495


>BP053195 
          Length = 417

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 15/23 (65%), Positives = 20/23 (86%)
 Frame = -2

Query: 248 VDFYKRGDGGGAPEALDLANRNL 270
           VD+Y R DGGGAPEA+D+A+ +L
Sbjct: 416 VDYYPRSDGGGAPEAVDVASGHL 348


>TC10053 similar to UP|CHLI_SOYBN (P93162) Magnesium-chelatase subunit chlI,
           chloroplast precursor  (Mg-protoporphyrin IX chelatase)
           , partial (58%)
          Length = 802

 Score = 27.7 bits (60), Expect = 2.2
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -3

Query: 103 DHVTSGNGVNKVFDKARLRKFWFPVSKMPKNGSDWPTV--KTMIRKNYRLIVFTSNAS 158
           DH TS  G+N + +KA   KF   +S        WP    + +I+  +  + F+ N S
Sbjct: 407 DHYTSNLGINHIKEKA---KFHLILSNYSSKRVHWPLAFFRNLIQNLFYRVDFSGNTS 243


>BP065238 
          Length = 449

 Score = 26.9 bits (58), Expect = 3.7
 Identities = 15/47 (31%), Positives = 24/47 (50%)
 Frame = +3

Query: 169 WNYVVESQFGNVGIKGGSCQNRPESLPMNNATKSLVLMNYFRNVRNH 215
           WNY  + + G VG+K     N+  +  MN+  ++L  + YFR    H
Sbjct: 114 WNYDSKKETGYVGLK-----NQGATCYMNSLLQTLYHIPYFRKAVYH 239


>AV425818 
          Length = 410

 Score = 26.6 bits (57), Expect = 4.9
 Identities = 14/43 (32%), Positives = 22/43 (50%), Gaps = 5/43 (11%)
 Frame = -2

Query: 45  KNGVRGLMLDMWDYEDTIWLCRGPC-----TKYTTFQPALNVL 82
           ++G R + LDM  + + + + RGPC     T   T  P L V+
Sbjct: 328 ESG*RSVTLDMTPFAERMHIARGPC*ENDITFIVTSSPVLTVM 200


>BP064555 
          Length = 523

 Score = 26.2 bits (56), Expect = 6.4
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 24  WSTGSPVLAFTNQEDSITDQLKNGVRGLMLDMW 56
           W    P+L +++  +++TD  +N +  LML +W
Sbjct: 353 WMKHYPILKYSSFLENMTDLTRNYILLLMLSIW 255


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.136    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,143,892
Number of Sequences: 28460
Number of extensions: 66309
Number of successful extensions: 313
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of query: 273
length of database: 4,897,600
effective HSP length: 89
effective length of query: 184
effective length of database: 2,364,660
effective search space: 435097440
effective search space used: 435097440
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)