BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0227.12
(414 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC15229 weakly similar to UP|O60585 (O60585) Ser/Arg-related nuc... 443 e-125
TC20206 286 3e-78
TC19455 similar to UP|Q8S8Z6 (Q8S8Z6) Syringolide-induced protei... 138 2e-33
TC10293 similar to UP|Q84TG3 (Q84TG3) At2g35930, partial (19%) 132 1e-31
AV408263 97 6e-21
AV418689 91 5e-19
BP084881 65 2e-11
TC8424 weakly similar to GB|BAC22265.1|24414015|AP003803 arm rep... 64 6e-11
BP043269 61 4e-10
TC11384 similar to UP|Q8S8Z6 (Q8S8Z6) Syringolide-induced protei... 60 9e-10
TC10660 similar to UP|Q8H5M9 (Q8H5M9) OJ1047_A06.31 protein, par... 56 1e-08
AV420512 53 8e-08
BP057633 49 2e-06
CN825689 47 4e-06
TC18228 similar to UP|Q9FKG6 (Q9FKG6) Receptor kinase-like prote... 47 8e-06
TC10610 weakly similar to UP|Q9FGD7 (Q9FGD7) Similarity to recep... 37 1e-05
TC10489 weakly similar to UP|Q86EY4 (Q86EY4) Clone ZZD1296 mRNA ... 45 2e-05
BP062406 45 2e-05
TC16801 similar to UP|Q84QD5 (Q84QD5) Avr9/Cf-9 rapidly elicited... 45 3e-05
AV766757 44 4e-05
>TC15229 weakly similar to UP|O60585 (O60585) Ser/Arg-related nuclear matrix
protein, partial (4%)
Length = 965
Score = 443 bits (1139), Expect = e-125
Identities = 233/233 (100%), Positives = 233/233 (100%)
Frame = +3
Query: 182 AAIAADLDKIGYLSVLLSHQSLDVRVNSAALIEMVVAGTHSADLRSQVSSVEGIHDGVVE 241
AAIAADLDKIGYLSVLLSHQSLDVRVNSAALIEMVVAGTHSADLRSQVSSVEGIHDGVVE
Sbjct: 6 AAIAADLDKIGYLSVLLSHQSLDVRVNSAALIEMVVAGTHSADLRSQVSSVEGIHDGVVE 185
Query: 242 ILRSPISYPRALKVGVKALFALCLVKQSRQRAVAAGAPAVLIDRLADFEKCDAERALATV 301
ILRSPISYPRALKVGVKALFALCLVKQSRQRAVAAGAPAVLIDRLADFEKCDAERALATV
Sbjct: 186 ILRSPISYPRALKVGVKALFALCLVKQSRQRAVAAGAPAVLIDRLADFEKCDAERALATV 365
Query: 302 ELLCRVPAGCAEFAGHALTVPMLVKIILKISDRATEYAAGALLSLCSESERLQMEAVAAG 361
ELLCRVPAGCAEFAGHALTVPMLVKIILKISDRATEYAAGALLSLCSESERLQMEAVAAG
Sbjct: 366 ELLCRVPAGCAEFAGHALTVPMLVKIILKISDRATEYAAGALLSLCSESERLQMEAVAAG 545
Query: 362 VLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPQDSIGNSDDFACSQLVVVPF 414
VLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPQDSIGNSDDFACSQLVVVPF
Sbjct: 546 VLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPQDSIGNSDDFACSQLVVVPF 704
>TC20206
Length = 508
Score = 286 bits (733), Expect = 3e-78
Identities = 138/138 (100%), Positives = 138/138 (100%)
Frame = +1
Query: 1 MRGCLEPLDLGIQIPYHYRCPISLELMRDPVTVCTGQTYDRSSIESWVNTGNTTCPVTRA 60
MRGCLEPLDLGIQIPYHYRCPISLELMRDPVTVCTGQTYDRSSIESWVNTGNTTCPVTRA
Sbjct: 94 MRGCLEPLDLGIQIPYHYRCPISLELMRDPVTVCTGQTYDRSSIESWVNTGNTTCPVTRA 273
Query: 61 PLTEFTLIPNHTLRRLIQEWCVANRAFGVERIPTPKQPAEPALVRSLLNQISSASASTHH 120
PLTEFTLIPNHTLRRLIQEWCVANRAFGVERIPTPKQPAEPALVRSLLNQISSASASTHH
Sbjct: 274 PLTEFTLIPNHTLRRLIQEWCVANRAFGVERIPTPKQPAEPALVRSLLNQISSASASTHH 453
Query: 121 RLNSLRRLRQLARDSDYN 138
RLNSLRRLRQLARDSDYN
Sbjct: 454 RLNSLRRLRQLARDSDYN 507
>TC19455 similar to UP|Q8S8Z6 (Q8S8Z6) Syringolide-induced protein 13-1-1,
partial (25%)
Length = 485
Score = 138 bits (347), Expect = 2e-33
Identities = 61/104 (58%), Positives = 79/104 (75%)
Frame = +1
Query: 12 IQIPYHYRCPISLELMRDPVTVCTGQTYDRSSIESWVNTGNTTCPVTRAPLTEFTLIPNH 71
I IP H+RCP+SL+LM+DPVT+ TG TYDR+SIE W+ GN CPVT LT F LIPNH
Sbjct: 154 IVIPNHFRCPVSLDLMKDPVTLPTGITYDRTSIEKWIEAGNKKCPVTNQILTTFDLIPNH 333
Query: 72 TLRRLIQEWCVANRAFGVERIPTPKQPAEPALVRSLLNQISSAS 115
+LRR+IQ+WCV N ++G+ERIPTP+ P P V + +++ SAS
Sbjct: 334 SLRRMIQDWCVKNSSYGIERIPTPRAPLNPFEVSEVCSRLLSAS 465
>TC10293 similar to UP|Q84TG3 (Q84TG3) At2g35930, partial (19%)
Length = 757
Score = 132 bits (332), Expect = 1e-31
Identities = 69/139 (49%), Positives = 88/139 (62%), Gaps = 8/139 (5%)
Frame = +3
Query: 12 IQIPYHYRCPISLELMRDPVTVCTGQTYDRSSIESWV----NTGNTTCPVTRAPLTE--- 64
+ +P ++ CPISLE+M+DPVTV TG TYDR SIE W+ NT TCPVT+ PL++
Sbjct: 102 VDVPSYFLCPISLEIMKDPVTVTTGITYDRESIEKWLFSKNNTKTITCPVTKQPLSDCSA 281
Query: 65 -FTLIPNHTLRRLIQEWCVANRAFGVERIPTPKQPAEPALVRSLLNQISSASASTHHRLN 123
TL PNHTLRRLIQ WC N + GVERIPTPK P + LL AS S ++
Sbjct: 282 DLTLTPNHTLRRLIQAWCTMNASHGVERIPTPKPPVNKTQISKLL---KDASRSPLMQIK 452
Query: 124 SLRRLRQLARDSDYNRSLI 142
L+RL+ +A S+ N+ I
Sbjct: 453 CLQRLKSIASGSETNKRCI 509
>AV408263
Length = 331
Score = 96.7 bits (239), Expect = 6e-21
Identities = 44/82 (53%), Positives = 56/82 (67%)
Frame = +2
Query: 3 GCLEPLDLGIQIPYHYRCPISLELMRDPVTVCTGQTYDRSSIESWVNTGNTTCPVTRAPL 62
G +E + IP ++CPISLELM+DPV V TGQTY+RS IE W+ G+ TCP T+ L
Sbjct: 65 GSIEKNHPALVIPTDFKCPISLELMQDPVIVSTGQTYERSCIEKWLQAGHGTCPKTQQSL 244
Query: 63 TEFTLIPNHTLRRLIQEWCVAN 84
T L PN+ LR LI++WC AN
Sbjct: 245 TSTVLTPNYVLRSLIEQWCEAN 310
>AV418689
Length = 371
Score = 90.5 bits (223), Expect = 5e-19
Identities = 38/63 (60%), Positives = 49/63 (77%)
Frame = +3
Query: 12 IQIPYHYRCPISLELMRDPVTVCTGQTYDRSSIESWVNTGNTTCPVTRAPLTEFTLIPNH 71
++IP H+RCPISL+LM+DPVT+ TG TYDR S+E W + GN TCPVT + F +IPNH
Sbjct: 183 LEIPNHFRCPISLDLMKDPVTLSTGITYDRDSVEKWFDDGNYTCPVTNQIVKNFDMIPNH 362
Query: 72 TLR 74
+LR
Sbjct: 363 SLR 371
>BP084881
Length = 488
Score = 65.5 bits (158), Expect = 2e-11
Identities = 28/68 (41%), Positives = 41/68 (60%)
Frame = -3
Query: 13 QIPYHYRCPISLELMRDPVTVCTGQTYDRSSIESWVNTGNTTCPVTRAPLTEFTLIPNHT 72
Q P ++ CPI E+MRDP G TY+ +I W+++G+ T P+T + L L+PN
Sbjct: 432 QPPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDSGHDTSPMTNSKLAHQNLVPNRA 253
Query: 73 LRRLIQEW 80
LR IQ+W
Sbjct: 252 LRSAIQDW 229
>TC8424 weakly similar to GB|BAC22265.1|24414015|AP003803 arm repeat
containing protein homolog-like {Oryza sativa (japonica
cultivar-group);} , partial (49%)
Length = 1586
Score = 63.5 bits (153), Expect = 6e-11
Identities = 52/151 (34%), Positives = 75/151 (49%)
Frame = +3
Query: 251 RALKVGVKALFALCLVKQSRQRAVAAGAPAVLIDRLADFEKCDAERALATVELLCRVPAG 310
R K + L+ LC VK +++RAV AG L+D +A+ AE+A+ + L V G
Sbjct: 648 RGKKDALTTLYKLCSVKLNKERAVNAGVVKPLVDLVAEQGTGLAEKAMVVLNSLAAVQDG 827
Query: 311 CAEFAGHALTVPMLVKIILKISDRATEYAAGALLSLCSESERLQMEAVAAGVLTQLLLLV 370
+ LV+ I S + E+A LL LC +S R + V G + L+ L
Sbjct: 828 KDAIVEEG-GIAALVEAIEDGSVKGKEFAVLTLLQLCVDSVRNRGLLVREGGIPPLVSLS 1004
Query: 371 QSDCTERAKRKAQLLLKLLRDSWPQDSIGNS 401
QS T RAK KA+ LL+ LR+S + S S
Sbjct: 1005QSG-TPRAKHKAETLLRYLRESRQEASSSGS 1094
>BP043269
Length = 413
Score = 60.8 bits (146), Expect = 4e-10
Identities = 27/78 (34%), Positives = 44/78 (55%)
Frame = -3
Query: 3 GCLEPLDLGIQIPYHYRCPISLELMRDPVTVCTGQTYDRSSIESWVNTGNTTCPVTRAPL 62
GC++ + +P + CPI ++M++P G +Y+ +IE W+ +GN P+T +
Sbjct: 396 GCIDR-ESSSDVPSVFICPILQDVMKNPHVAADGFSYELEAIEQWLQSGNERSPMTNLRM 220
Query: 63 TEFTLIPNHTLRRLIQEW 80
L PNHTLR LI +W
Sbjct: 219 KHTFLTPNHTLRSLIDDW 166
>TC11384 similar to UP|Q8S8Z6 (Q8S8Z6) Syringolide-induced protein 13-1-1,
partial (29%)
Length = 677
Score = 59.7 bits (143), Expect = 9e-10
Identities = 36/115 (31%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Frame = +2
Query: 277 GAPAVLIDRLADF-EKCDAERALATVELLCRVPAGCAEFAGHALTVPMLVKIILKISDRA 335
G ++L++ + D +K E+AL ++ +C G +ALT+P+++K+ L++S A
Sbjct: 5 GLVSLLLEIIVDCADKGTCEKALGVLDCICDCKEGKDIAKRNALTLPLVIKV-LRVSHLA 181
Query: 336 TEYAAGALLSLCSESER-LQMEAVAAGVLTQLLLLVQSDCTERAKRKAQLLLKLL 389
+ +A L +C + E + +EA+ G +LL+++Q C E K A LLKLL
Sbjct: 182 SSFAVSVLRKICDKREEAILIEALQVGAFQKLLVMLQVGCDETTKENATELLKLL 346
>TC10660 similar to UP|Q8H5M9 (Q8H5M9) OJ1047_A06.31 protein, partial (12%)
Length = 417
Score = 56.2 bits (134), Expect = 1e-08
Identities = 33/88 (37%), Positives = 44/88 (49%)
Frame = +1
Query: 302 ELLCRVPAGCAEFAGHALTVPMLVKIILKISDRATEYAAGALLSLCSESERLQMEAVAAG 361
EL+C V G HAL VP++V ++ K R EYA G L + + M A
Sbjct: 1 ELMCTVAEGAEAVRAHALAVPVMVTMMGKTGARGKEYAIGVLAVIYGGAVAEHMTAPPEE 180
Query: 362 VLTQLLLLVQSDCTERAKRKAQLLLKLL 389
V + L +Q +C+ R KRK LLLK L
Sbjct: 181 VARAVELALQGECSARGKRKGGLLLKTL 264
>AV420512
Length = 423
Score = 53.1 bits (126), Expect = 8e-08
Identities = 20/41 (48%), Positives = 32/41 (77%)
Frame = -2
Query: 8 LDLGIQIPYHYRCPISLELMRDPVTVCTGQTYDRSSIESWV 48
L + +P +++CPISLE+M DPV +C+G T+DR+SI+ W+
Sbjct: 125 LVMASHLPDYFKCPISLEIMSDPVILCSGHTFDRASIKRWL 3
>BP057633
Length = 570
Score = 48.9 bits (115), Expect = 2e-06
Identities = 36/97 (37%), Positives = 50/97 (51%)
Frame = -2
Query: 295 ERALATVELLCRVPAGCAEFAGHALTVPMLVKIILKISDRATEYAAGALLSLCSESERLQ 354
++A+A + L + G +E A +P+LV+II S R E AA LL LC S +
Sbjct: 512 DKAVALLSNLSTITEGRSEIAREG-GIPLLVEIIESGSQRGKENAASILLQLCLHSSKFC 336
Query: 355 MEAVAAGVLTQLLLLVQSDCTERAKRKAQLLLKLLRD 391
+ G + L+ L QS T RAK KAQ LL R+
Sbjct: 335 TLVLQEGAVPPLVALSQSG-TPRAKEKAQQLLSHFRN 228
>CN825689
Length = 639
Score = 47.4 bits (111), Expect = 4e-06
Identities = 43/198 (21%), Positives = 92/198 (45%), Gaps = 7/198 (3%)
Frame = +1
Query: 162 ELSHESLALLV-MFPLAESDCAAIAADLDKIGYLSVLLSHQSLDVRVNSAALIEMVVAGT 220
E + +L+ +V + PL + + D K+ LL + ++ + +IE A +
Sbjct: 43 EFAEVALSCIVKLLPLVSLEPLNMIKDESKLATFLQLLEKGTSSIKTSLCQVIESTAAIS 222
Query: 221 HSADLRSQVSSVEGIHDGVVEILRS---PISYPRALK-VGVKALFALCLVKQSRQRAVAA 276
+ + + + + +V ++R +S ++ ++A+ ALC + +R+ V A
Sbjct: 223 QTDGVHHILGNSHKLVQEIVLLIRQNCDEVSVSVSVSNAAIRAMSALCSMVSNRENLVKA 402
Query: 277 GAPAVLIDRLAD-FEKCDAERALATVELLCRVPAGCAEFAGHALTVPMLVKIILKI-SDR 334
GA +I +++ EK A A+ ++ L + +G H + LVK++ ++ +
Sbjct: 403 GAIEAIIAYISEPREKNLAPLAMVAMKKLVVLESGKEALVNHPRGIETLVKMVFRVCNQE 582
Query: 335 ATEYAAGALLSLCSESER 352
+E A G LL +C +S R
Sbjct: 583 CSEIAVGVLLIVCCDSGR 636
>TC18228 similar to UP|Q9FKG6 (Q9FKG6) Receptor kinase-like protein, partial
(7%)
Length = 718
Score = 46.6 bits (109), Expect = 8e-06
Identities = 23/56 (41%), Positives = 29/56 (51%)
Frame = +1
Query: 25 ELMRDPVTVCTGQTYDRSSIESWVNTGNTTCPVTRAPLTEFTLIPNHTLRRLIQEW 80
++M DP G TYDR +IE W+ N P+T L LIPN+ L I EW
Sbjct: 142 DVMDDPCVAADGYTYDRKAIEKWLQE-NDNSPMTNMALPHKNLIPNYALVSAILEW 306
>TC10610 weakly similar to UP|Q9FGD7 (Q9FGD7) Similarity to receptor-like
kinase, partial (6%)
Length = 568
Score = 37.4 bits (85), Expect(2) = 1e-05
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +1
Query: 15 PYHYRCPISLELMRDPVTVCTGQTYDRSSIESWVNTGNTTCPVTRAPLTEFTLIP 69
P Y CPI +M +P G TY+ +I++W++ N + PVT+ L L P
Sbjct: 37 PSPYYCPILQAIMDEPHIAADGFTYEYRAIKAWLSKHNVS-PVTKVKLQHSELTP 198
Score = 27.7 bits (60), Expect(2) = 1e-05
Identities = 10/13 (76%), Positives = 11/13 (83%)
Frame = +2
Query: 68 IPNHTLRRLIQEW 80
+PNHTLR IQEW
Sbjct: 194 LPNHTLRSAIQEW 232
>TC10489 weakly similar to UP|Q86EY4 (Q86EY4) Clone ZZD1296 mRNA sequence,
partial (22%)
Length = 552
Score = 45.4 bits (106), Expect = 2e-05
Identities = 22/65 (33%), Positives = 35/65 (53%)
Frame = +1
Query: 14 IPYHYRCPISLELMRDPVTVCTGQTYDRSSIESWVNTGNTTCPVTRAPLTEFTLIPNHTL 73
+P + C I+L++ DPV +G TY+R+ I + PVTR PL L+PN +
Sbjct: 85 VPDYLCCKITLDIFHDPVITPSGLTYERAVILDHLQKVGRFDPVTREPLDPSQLVPNLAI 264
Query: 74 RRLIQ 78
+ +Q
Sbjct: 265 KEAVQ 279
>BP062406
Length = 510
Score = 45.1 bits (105), Expect = 2e-05
Identities = 27/67 (40%), Positives = 39/67 (57%)
Frame = -3
Query: 335 ATEYAAGALLSLCSESERLQMEAVAAGVLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWP 394
+TE+A GALLSLC S E + LL + D T A+ +A++LL LLRDS P
Sbjct: 424 STEHAVGALLSLCRSSRDKYRELILNEGAIPGLLRLTVDGTAEAQNRARVLLDLLRDSPP 245
Query: 395 QDSIGNS 401
+ ++ +S
Sbjct: 244 EKTLTSS 224
>TC16801 similar to UP|Q84QD5 (Q84QD5) Avr9/Cf-9 rapidly elicited protein
74, partial (11%)
Length = 583
Score = 44.7 bits (104), Expect = 3e-05
Identities = 26/69 (37%), Positives = 38/69 (54%), Gaps = 8/69 (11%)
Frame = +1
Query: 329 LKISDRATEYAAGALLSLCSESE--------RLQMEAVAAGVLTQLLLLVQSDCTERAKR 380
L++S +T Y+ A+ LC E R+ +EA+ G +LLL++Q CTE K
Sbjct: 1 LRVSALSTGYSVSAMWKLCKFGEKKDDDDEGRVLVEALQVGAFQKLLLVLQVGCTEETKE 180
Query: 381 KAQLLLKLL 389
+A LLKLL
Sbjct: 181 RATELLKLL 207
>AV766757
Length = 601
Score = 44.3 bits (103), Expect = 4e-05
Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 1/162 (0%)
Frame = +2
Query: 197 LLSHQSLDVRVNSAA-LIEMVVAGTHSADLRSQVSSVEGIHDGVVEILRSPISYPRALKV 255
+L S++ R N+AA L + V + + S G +V +L R K
Sbjct: 131 VLRKGSMEARENAAATLFSLSVVDENKVTIGSS-----GAIPPLVTLLSEGTQ--RGKKD 289
Query: 256 GVKALFALCLVKQSRQRAVAAGAPAVLIDRLADFEKCDAERALATVELLCRVPAGCAEFA 315
ALF LC+ + ++ +AV AG L+ L + + ALA + +L P G A
Sbjct: 290 AATALFNLCIYQGNKGKAVRAGVIPTLMKLLTEPSGGMVDEALAILAILSSHPDGKAAI- 466
Query: 316 GHALTVPMLVKIILKISDRATEYAAGALLSLCSESERLQMEA 357
G A VP+LV+ I S R E +A L+ L S ++ +A
Sbjct: 467 GAADAVPILVEFIGNGSPRNKENSAAVLVHLSSGDQQYLAQA 592
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,782,284
Number of Sequences: 28460
Number of extensions: 86062
Number of successful extensions: 427
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of query: 414
length of database: 4,897,600
effective HSP length: 93
effective length of query: 321
effective length of database: 2,250,820
effective search space: 722513220
effective search space used: 722513220
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0227.12