TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0226.9
         (223 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8084 similar to UP|PIF1_YEAST (P07271) DNA repair and recombin...   176  3e-45
TC15490 weakly similar to UP|Q9LTU4 (Q9LTU4) Helicase-like prote...   142  8e-42
BP046665                                                              161  1e-40
TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination p...    92  2e-28
BP065488                                                               86  1e-19
AU089042                                                               66  5e-12
TC11129 weakly similar to UP|PDA6_MEDSA (P38661) Probable protei...    52  1e-07
TC14212 similar to UP|Q9FN61 (Q9FN61) Gb|AAF07369.1, partial (10%)     42  1e-04
TC11979 similar to UP|Q9LVH4 (Q9LVH4) GTPase activating protein-...    28  1.3
TC15418 weakly similar to UP|Q8GT65 (Q8GT65) Serpin-like protein...    28  1.3
TC12406 similar to UP|Q9AT32 (Q9AT32) Poly(A)-binding protein, p...    27  2.2
TC14284 similar to GB|BAB03165.1|11994775|AP002050 membrane impo...    26  6.3
TC14159 homologue to UP|ATP2_HEVBR (P29685) ATP synthase beta ch...    25  8.2

>TC8084 similar to UP|PIF1_YEAST (P07271) DNA repair and recombination
           protein PIF1, mitochondrial precursor, partial (4%)
          Length = 560

 Score =  176 bits (446), Expect = 3e-45
 Identities = 90/134 (67%), Positives = 106/134 (78%)
 Frame = +1

Query: 90  IDQAASLCNGTRLIVDELGERFIGATVITGTNVNDKVHILRMDLVLSDSKFPIKFRIRQF 149
           I +  +LCNGTRLIV +LG   I ATVITGTN+ D + I R+D+V SDS +P KF  R F
Sbjct: 43  IQKFENLCNGTRLIVVDLGTYVIKATVITGTNIGDDIFIPRLDMVPSDSGYPFKFERR*F 222

Query: 150 PIAICFAMTINKSQGQTLSQVGLFLPRPVFTHGQLYVALSRVRSRKGLKLCILDEAGKQQ 209
           PI++CFAMTINKSQGQ+LS V L+L RPVFTHGQLYVALSRVRSRKGLKL +LDE  K  
Sbjct: 223 PISLCFAMTINKSQGQSLSHVSLYLSRPVFTHGQLYVALSRVRSRKGLKLLVLDEEEKVT 402

Query: 210 TSTVNVVFKEVFEN 223
            +T NVV++EVFEN
Sbjct: 403 NTTKNVVYREVFEN 444


>TC15490 weakly similar to UP|Q9LTU4 (Q9LTU4) Helicase-like protein, partial
           (8%)
          Length = 634

 Score =  142 bits (359), Expect(2) = 8e-42
 Identities = 72/112 (64%), Positives = 87/112 (77%)
 Frame = +2

Query: 112 IGATVITGTNVNDKVHILRMDLVLSDSKFPIKFRIRQFPIAICFAMTINKSQGQTLSQVG 171
           I  TVITGT++ D + I RMD+V SDS +P KF  RQ PI++CFAMTINKSQG++LS VG
Sbjct: 137 IQVTVITGTHIGDDISIPRMDMVPSDSSYPFKFERRQSPISLCFAMTINKSQGRSLSHVG 316

Query: 172 LFLPRPVFTHGQLYVALSRVRSRKGLKLCILDEAGKQQTSTVNVVFKEVFEN 223
           L+L RPV THG LYVAL RVRSRK LKL +LDE  K   +T NVV++E+FEN
Sbjct: 317 LYLSRPVSTHG*LYVALPRVRSRK*LKLLVLDEEEKMTNTTKNVVYREIFEN 472



 Score = 43.5 bits (101), Expect(2) = 8e-42
 Identities = 22/30 (73%), Positives = 24/30 (79%)
 Frame = +1

Query: 79  KVGTPIMLLRNIDQAASLCNGTRLIVDELG 108
           K G  IMLLRNI QA+ LCNGTRLIV +LG
Sbjct: 43  KEGALIMLLRNIVQASGLCNGTRLIVVDLG 132


>BP046665 
          Length = 524

 Score =  161 bits (407), Expect = 1e-40
 Identities = 83/131 (63%), Positives = 99/131 (75%), Gaps = 1/131 (0%)
 Frame = -1

Query: 65  DTKSSGMPNHQLLLKVGTPIMLLRNIDQAASLCNGTRLIVDELGERFIGATVITGTNVND 124
           D    G+PNH++ LK G PIMLLRNI QA   CNGTRLIV +LG   I ATVIT TN+ D
Sbjct: 524 DITCFGIPNHKITLKEGAPIMLLRNIYQAVGFCNGTRLIVADLGTNVIKATVIT*TNIGD 345

Query: 125 KVHILRMDLVLSDSKFPIKFRIRQFPIAICFAMTINKSQGQTLSQVGLFLPRPVFTHGQL 184
            + I RMD+V SDS +P KF  RQFPI++C AMTINKSQGQ+LS VGL+L R VFTHGQL
Sbjct: 344 DIFIPRMDMVPSDSGYPFKFERRQFPISLCSAMTINKSQGQSLSHVGLYLSRHVFTHGQL 165

Query: 185 YVAL-SRVRSR 194
           YVAL ++++ R
Sbjct: 164 YVALHAKIKKR 132



 Score = 37.7 bits (86), Expect = 0.002
 Identities = 19/40 (47%), Positives = 26/40 (64%)
 Frame = -2

Query: 178 VFTHGQLYVALSRVRSRKGLKLCILDEAGKQQTSTVNVVF 217
           +++H      LS +RSRKGLKL +LDE  K   +T NVV+
Sbjct: 187 MYSHMVSCTLLSMLRSRKGLKLLVLDEEEKVTNTTKNVVY 68


>TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination protein
           DMC1/LIM15 homolog, partial (12%)
          Length = 628

 Score = 92.4 bits (228), Expect(2) = 2e-28
 Identities = 46/75 (61%), Positives = 57/75 (75%)
 Frame = +1

Query: 90  IDQAASLCNGTRLIVDELGERFIGATVITGTNVNDKVHILRMDLVLSDSKFPIKFRIRQF 149
           I +  +LC+GTRLIV +LG   I ATVITGTN+ D + I R+D+V SDS +P KF  R F
Sbjct: 151 IQKFENLCHGTRLIVVDLGTYVIKATVITGTNIGDDIFIPRLDMVPSDSGYPFKFERR*F 330

Query: 150 PIAICFAMTINKSQG 164
           PI++CFAMTINKSQG
Sbjct: 331 PISLCFAMTINKSQG 375



 Score = 49.3 bits (116), Expect(2) = 2e-28
 Identities = 24/35 (68%), Positives = 28/35 (79%)
 Frame = +3

Query: 189 SRVRSRKGLKLCILDEAGKQQTSTVNVVFKEVFEN 223
           SRVRSRKGLKL +LDE  K   +T NVV++EVFEN
Sbjct: 369 SRVRSRKGLKLLVLDEEEKVTNTTKNVVYREVFEN 473


>BP065488 
          Length = 439

 Score = 85.5 bits (210), Expect(2) = 1e-19
 Identities = 52/102 (50%), Positives = 66/102 (63%), Gaps = 2/102 (1%)
 Frame = -1

Query: 124 DKVHILRMDLVLSDSKFPIKFRIRQFPIAICFAMTINKSQGQT-LSQVGLFLPRPVFTH- 181
           D + I RM++V S S  P+KF   QFPI++CFAMTINKSQ       V L      ++H 
Sbjct: 376 DDIFIPRMNMVPSVSGDPLKFERCQFPISLCFAMTINKSQXSVHYPTVALISFLACYSHM 197

Query: 182 GQLYVALSRVRSRKGLKLCILDEAGKQQTSTVNVVFKEVFEN 223
            +LYVALS VRSRKGLKL +L E  K   +T N V++EVF+N
Sbjct: 196 DKLYVALSGVRSRKGLKLLVLGEEEKVTNATKNEVYQEVFKN 71



 Score = 26.6 bits (57), Expect(2) = 1e-19
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 104 VDELGERFIGATVITGTNV 122
           V +LG   I ATVITGTN+
Sbjct: 437 VPDLGTNVIKATVITGTNI 381


>AU089042 
          Length = 191

 Score = 65.9 bits (159), Expect = 5e-12
 Identities = 31/61 (50%), Positives = 43/61 (69%)
 Frame = +3

Query: 77  LLKVGTPIMLLRNIDQAASLCNGTRLIVDELGERFIGATVITGTNVNDKVHILRMDLVLS 136
           +LK G P+ML+ N+  +  LCNGTRLIVD LG   IGAT+++GT++   V+I  M+L  S
Sbjct: 6   VLKXGVPVMLMXNLXISTGLCNGTRLIVDYLGPNVIGATILSGTHIGXVVYISMMNLXPS 185

Query: 137 D 137
           D
Sbjct: 186 D 188


>TC11129 weakly similar to UP|PDA6_MEDSA (P38661) Probable protein disulfide
           isomerase A6 precursor  (P5) , partial (7%)
          Length = 600

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 23/46 (50%), Positives = 33/46 (71%)
 Frame = +2

Query: 15  PTLEAVEMLNTYMLGMIAAPEHEYLSSDSALRSDEDSEIKVEWFTT 60
           PTLE+VE +N +ML ++     EYLSSD+  + DED+E++  WFTT
Sbjct: 458 PTLESVEKVNEFMLDLLPGNTTEYLSSDTTCKYDEDTELQS*WFTT 595


>TC14212 similar to UP|Q9FN61 (Q9FN61) Gb|AAF07369.1, partial (10%)
          Length = 613

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 19/39 (48%), Positives = 28/39 (71%)
 Frame = +2

Query: 184 LYVALSRVRSRKGLKLCILDEAGKQQTSTVNVVFKEVFE 222
           LYVA+SRV+S+ GLK+ I  +      +T N+V+KEVF+
Sbjct: 2   LYVAVSRVKSKDGLKILISSDGTSTPGATKNIVYKEVFQ 118


>TC11979 similar to UP|Q9LVH4 (Q9LVH4) GTPase activating protein-like,
           partial (94%)
          Length = 711

 Score = 28.1 bits (61), Expect = 1.3
 Identities = 16/66 (24%), Positives = 32/66 (48%)
 Frame = +1

Query: 138 SKFPIKFRIRQFPIAICFAMTINKSQGQTLSQVGLFLPRPVFTHGQLYVALSRVRSRKGL 197
           S+ P+  R R FP  +C+    N  + +   ++    P+ +  +    + L RVR ++G+
Sbjct: 85  SQVPLPHRDRHFPYWLCYYYNHNIKREERKKEMEDSTPKSLMEN---LLGLLRVRVKRGV 255

Query: 198 KLCILD 203
            L + D
Sbjct: 256 NLAVRD 273


>TC15418 weakly similar to UP|Q8GT65 (Q8GT65) Serpin-like protein
           (Fragment), partial (44%)
          Length = 602

 Score = 28.1 bits (61), Expect = 1.3
 Identities = 21/65 (32%), Positives = 30/65 (45%), Gaps = 6/65 (9%)
 Frame = +1

Query: 162 SQGQTLSQVGLFLPRPVFTHGQLY------VALSRVRSRKGLKLCILDEAGKQQTSTVNV 215
           S+G TL Q+  FL      H   +      V LS   S  G +LC  D    +Q+ T+N 
Sbjct: 151 SEGPTLHQLLTFLRSNSTDHLNSFASQLVSVVLSDASSVGGPRLCFADGVWVEQSLTLNP 330

Query: 216 VFKEV 220
            FK++
Sbjct: 331 SFKQL 345


>TC12406 similar to UP|Q9AT32 (Q9AT32) Poly(A)-binding protein, partial (6%)
          Length = 450

 Score = 27.3 bits (59), Expect = 2.2
 Identities = 15/38 (39%), Positives = 19/38 (49%)
 Frame = -3

Query: 118 TGTNVNDKVHILRMDLVLSDSKFPIKFRIRQFPIAICF 155
           T T V  +  ILR++L LS   FP       FP+  CF
Sbjct: 325 TTTTVGSRHRILRLNLNLSHQNFP------NFPLFFCF 230


>TC14284 similar to GB|BAB03165.1|11994775|AP002050 membrane import
           protein-like {Arabidopsis thaliana;} , partial (36%)
          Length = 702

 Score = 25.8 bits (55), Expect = 6.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 86  LLRNIDQAASLCNGTRLIVDELGERF 111
           L + I + ASLC  T+ I+ EL E+F
Sbjct: 413 LKKEITEEASLCRETQFIMHELLEKF 490


>TC14159 homologue to UP|ATP2_HEVBR (P29685) ATP synthase beta chain,
           mitochondrial precursor  , partial (93%)
          Length = 2056

 Score = 25.4 bits (54), Expect = 8.2
 Identities = 13/31 (41%), Positives = 16/31 (50%), Gaps = 9/31 (29%)
 Frame = +2

Query: 134 VLSDSKFP---------IKFRIRQFPIAICF 155
           ++SDS FP          +FRI  FPI  CF
Sbjct: 65  IVSDSIFPPSISIQTLHFRFRIADFPIPTCF 157


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.137    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,201,540
Number of Sequences: 28460
Number of extensions: 37239
Number of successful extensions: 144
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of query: 223
length of database: 4,897,600
effective HSP length: 87
effective length of query: 136
effective length of database: 2,421,580
effective search space: 329334880
effective search space used: 329334880
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)