TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0226.8
         (518 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC9659 homologue to UP|Q9SEA8 (Q9SEA8) Salt-induced AAA-Type ATP...   236  9e-63
TC13255 homologue to UP|Q7XXR9 (Q7XXR9) Katanin, partial (41%)        203  5e-53
TC18707 homologue to PIR|T02901|T02901 MSP1 protein homolog T13J...   184  4e-47
TC15365 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 {...   161  3e-40
BF177891                                                              130  7e-31
TC9326 homologue to UP|Q93WX4 (Q93WX4) Suppressor of K+ transpor...   127  3e-30
TC12787 weakly similar to UP|MSP1_YEAST (P28737) MSP1 protein (T...   127  3e-30
TC9489 homologue to UP|Q9SEI5 (Q9SEI5) 26S proteasome AAA-ATPase...   121  3e-28
TC14911 homologue to UP|Q93X55 (Q93X55) Peroxin 6 (Fragment), pa...   114  3e-26
AV408284                                                              112  2e-25
TC16349 homologue to UP|PRS6_SOLTU (P54778) 26S protease regulat...   105  2e-23
CB826675                                                              102  2e-22
CN825587                                                               91  3e-19
TC9051 UP|PRS7_ARATH (Q9SSB5) 26S protease regulatory subunit 7 ...    87  9e-18
AV421390                                                               81  5e-16
TC12379 homologue to UP|O04327 (O04327) Cell division protein Ft...    79  1e-15
TC16655 homologue to UP|O99018 (O99018) Chloroplast protease pre...    77  7e-15
CN825067                                                               67  9e-12
TC10924 homologue to UP|Q8H9D4 (Q8H9D4) 26S proteasome AAA-ATPas...    66  2e-11
AV422700                                                               62  3e-10

>TC9659 homologue to UP|Q9SEA8 (Q9SEA8) Salt-induced AAA-Type ATPase,
           partial (74%)
          Length = 1060

 Score =  236 bits (601), Expect = 9e-63
 Identities = 120/243 (49%), Positives = 168/243 (68%), Gaps = 5/243 (2%)
 Frame = +1

Query: 184 GVSGKAGKTDSVISDAEESKSKKSQYE--GPDPELAEM---LERDVLETSPGVRWEDVAG 238
           G  G A   D+ ++   ++K K       G DPE A++   L   ++   P ++W DVAG
Sbjct: 298 GGPGPASNGDAAVAARPKTKPKDGGEGDGGEDPEQAKLRAGLNSAIIREKPNIKWNDVAG 477

Query: 239 LTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNV 298
           L  AK+ L+EAV+LP+  P++F G RRPW+  L++GPPGTGK+ LAKAVATE  +TFF+V
Sbjct: 478 LESAKQSLQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSV 657

Query: 299 SSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSRGASGEHESSRRVKSEL 358
           SS+ L SKW GESE++V  LF +AR  APS IF+DEIDSLC  RG   E E+SRR+K+EL
Sbjct: 658 SSSDLGSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRGEGNESEASRRIKTEL 837

Query: 359 LVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIR 418
           LVQ+ GV N       + + V+VLAATN P+ +D+A+RRR +KRIYIPLP+ ++R+ + +
Sbjct: 838 LVQMQGVGN-------NDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDVKARQHMFK 996

Query: 419 INL 421
           ++L
Sbjct: 997 VHL 1005


>TC13255 homologue to UP|Q7XXR9 (Q7XXR9) Katanin, partial (41%)
          Length = 532

 Score =  203 bits (517), Expect = 5e-53
 Identities = 96/158 (60%), Positives = 129/158 (80%), Gaps = 1/158 (0%)
 Frame = +1

Query: 257 PEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVR 316
           P+YF G+  PWKG+L+FGPPGTGKT+LAKAVATEC TTFFN+S++++ SKWRG+SE++V+
Sbjct: 4   PKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVK 183

Query: 317 CLFDLARAYAPSTIFIDEIDSLCNSRG-ASGEHESSRRVKSELLVQVDGVSNTATNEDGS 375
            LF LAR +APSTIF+DEID++ + RG A  EHE+SRR+K+ELL+Q+DG++ T       
Sbjct: 184 VLFQLARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTRT------- 342

Query: 376 RKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESR 413
            ++V VLAATN PW++D A+ RRLEKRI +PLP  E+R
Sbjct: 343 DELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEAR 456


>TC18707 homologue to PIR|T02901|T02901 MSP1 protein homolog T13J8.110 -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (29%)
          Length = 771

 Score =  184 bits (466), Expect = 4e-47
 Identities = 95/211 (45%), Positives = 141/211 (66%), Gaps = 2/211 (0%)
 Frame = +3

Query: 210 EGPDPELAEMLERDVLETSP-GVRWEDVAGLTEAKRLLEEAVVLPLWMPEYFQG-IRRPW 267
           E PD E  + +  +V+  +  GV + D+  + E K  L+E V+LPL  P+ F+G + +P 
Sbjct: 126 EVPDNEFEKRIRPEVIPANEIGVTFGDIGAMDEIKESLQELVMLPLRRPDLFKGGLLKPC 305

Query: 268 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAP 327
           +G+L+FGPPGTGKT+LA A+A E G +F NVS +T+ SKW GE E+ VR LF LA   AP
Sbjct: 306 RGILLFGPPGTGKTMLAXAIANEAGASFINVSMSTITSKWFGEDEKNVRALFSLAAKVAP 485

Query: 328 STIFIDEIDSLCNSRGASGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNF 387
           + IF+DE+DS+   R   GEHE+ R++K+E +   DG+  TA  E      ++VLAATN 
Sbjct: 486 TIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLL-TAPGEQ-----ILVLAATNR 647

Query: 388 PWDIDEALRRRLEKRIYIPLPNFESRKELIR 418
           P+D+DEA+ RR E+RI + LP+ E+R+ +++
Sbjct: 648 PFDLDEAIIRRFERRIMVGLPSVENREMILK 740


>TC15365 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 {Arabidopsis
           thaliana;}, partial (87%)
          Length = 1385

 Score =  161 bits (407), Expect = 3e-40
 Identities = 104/294 (35%), Positives = 168/294 (56%), Gaps = 7/294 (2%)
 Frame = +3

Query: 225 LETSPGVRWEDVAGLTEAKRLLEEAVVLPLWMPEYFQ--GIRRPWKGVLMFGPPGTGKTL 282
           +E  P   ++ + GL +  + ++E + LP+  PE F+  GI +P KGVL++GPPGTGKTL
Sbjct: 300 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTL 476

Query: 283 LAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSR 342
           LA+AVA     TF  VS + L  K+ GE  RMVR LF +AR +APS IF+DEIDS+ ++R
Sbjct: 477 LARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSAR 656

Query: 343 GASGE---HESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRR-- 397
             SG        +R   ELL Q+DG    A+N+      + VL ATN    +D+AL R  
Sbjct: 657 MESGSGXGDSEVQRTMLELLNQLDGFE--ASNK------IKVLMATNRIDILDQALLRPG 812

Query: 398 RLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDEVARRTDGYSGDDLTNVCRDASLN 457
           R++++I  P PN ESR+++++I+ + + +   +++ ++A + +G SG +L  VC +A + 
Sbjct: 813 RIDRKIEFPNPNEESRQDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMF 992

Query: 458 GMRRKIAGKTRDEIKNMSKDDISKDPVAMCDFEEALVKVQRSVSQADIERHEKW 511
            +R +    T++                  DFE A+ KV +  ++ ++   + W
Sbjct: 993 ALRERRVHVTQE------------------DFEMAVAKVMKKETEKNMSLRKLW 1100


>BF177891 
          Length = 390

 Score =  130 bits (326), Expect = 7e-31
 Identities = 61/120 (50%), Positives = 86/120 (70%), Gaps = 2/120 (1%)
 Frame = +1

Query: 248 EAVVLPLWMPEYFQ--GIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLAS 305
           E V+LP+  PE F    + RP KG+L+FGPPGTGKTL+AKA+ATE G  F +VS +TL S
Sbjct: 16  ELVILPMRRPELFTHGNLLRPVKGILLFGPPGTGKTLMAKALATEAGANFISVSGSTLTS 195

Query: 306 KWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSRGASGEHESSRRVKSELLVQVDGV 365
           KW G++E++ + LF  A   AP  IF+DE+DSL  +RG + EHE++RR+++E +   DG+
Sbjct: 196 KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGL 375


>TC9326 homologue to UP|Q93WX4 (Q93WX4) Suppressor of K+ transport growth
           defect-like protein (Fragment), partial (73%)
          Length = 894

 Score =  127 bits (320), Expect = 3e-30
 Identities = 73/211 (34%), Positives = 120/211 (56%), Gaps = 25/211 (11%)
 Frame = +2

Query: 331 FIDEIDSLCNSRGASGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWD 390
           F+DEIDSLC  RG   E E+SRR+K+ELLVQ+ GV N           V+VLAATN P+ 
Sbjct: 20  FVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQK-------VLVLAATNTPYA 178

Query: 391 IDEALRRRLEKRIYIPLPNFESRKELIRINL-KTVEVAPDVNIDEVARRTDGYSGDDLTN 449
           +D+A+RRR +KRIYIPLP+ ++R+ + +++L  T     + + + +A RT+G+SG D++ 
Sbjct: 179 LDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLNESDFEYLASRTEGFSGSDISV 358

Query: 450 VCRDASLNGMRR--------------------KIAGKTRDEIKNMSKDDISKD----PVA 485
             +D     +R+                    K  G  +  +++++   ++      P+ 
Sbjct: 359 CVKDVLFEPVRKTQDAMFFFKNPEGMWIPCGPKQQGAVQITMQDLAAKGLASQILPPPIT 538

Query: 486 MCDFEEALVKVQRSVSQADIERHEKWFHEFG 516
             DFE+ L + + +VS+ D+E HE++  EFG
Sbjct: 539 RTDFEKVLARQRPTVSKKDLEVHERFTKEFG 631


>TC12787 weakly similar to UP|MSP1_YEAST (P28737) MSP1 protein (TAT-binding
           homolog 4), partial (20%)
          Length = 389

 Score =  127 bits (320), Expect = 3e-30
 Identities = 61/122 (50%), Positives = 85/122 (69%), Gaps = 2/122 (1%)
 Frame = +3

Query: 246 LEEAVVLPLWMPEYF--QGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATL 303
           L+E V+LPL  PE F    + +P KG+L+FGPPGTGKT+LAKAVATE G  F N+S +++
Sbjct: 12  LKELVMLPLKRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 191

Query: 304 ASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSRGASGEHESSRRVKSELLVQVD 363
            SKW GE E+ V+ +F LA   +PS IF+DE+D +   R   GEHE+ R++ +E +V  D
Sbjct: 192 TSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDXMLXRRENPGEHEAMRKMXNEFMVHWD 371

Query: 364 GV 365
           G+
Sbjct: 372 GL 377


>TC9489 homologue to UP|Q9SEI5 (Q9SEI5) 26S proteasome AAA-ATPase subunit
           RPT2a, partial (69%)
          Length = 916

 Score =  121 bits (303), Expect = 3e-28
 Identities = 80/205 (39%), Positives = 117/205 (57%), Gaps = 5/205 (2%)
 Frame = +1

Query: 215 ELAEMLERDVLETSPGVRWEDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMF 273
           E+  M+    +E +P   + D+ GL    + ++EAV LPL  PE ++ I  +P KGV+++
Sbjct: 325 EVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILY 504

Query: 274 GPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFID 333
           G PGTGKTLLAKAVA     TF  V  + L  K+ G+  ++VR LF +A   +PS +FID
Sbjct: 505 GEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFID 684

Query: 334 EIDSLCNSR--GASGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDI 391
           EID++   R    SG     +R   ELL Q+DG          SR  V V+ ATN    +
Sbjct: 685 EIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD--------SRGDVKVILATNRIESL 840

Query: 392 DEALRR--RLEKRIYIPLPNFESRK 414
           D AL R  R++++I  PLP+ ++R+
Sbjct: 841 DPALLRPGRIDRKIEFPLPDTKTRR 915


>TC14911 homologue to UP|Q93X55 (Q93X55) Peroxin 6 (Fragment), partial (32%)
          Length = 1418

 Score =  114 bits (286), Expect = 3e-26
 Identities = 68/166 (40%), Positives = 92/166 (54%)
 Frame = +2

Query: 182 KSGVSGKAGKTDSVISDAEESKSKKSQYEGPDPELAEMLERDVLETSPGVRWEDVAGLTE 241
           KS VS +    + V++  E SK + +   G  P++            P V+WEDV GL +
Sbjct: 107 KSKVSPRIPGKEDVMNALERSKKRNASALGT-PKV------------PNVKWEDVGGLED 247

Query: 242 AKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSA 301
            K+ + + V LPL   + F    R   GVL++GPPGTGKTLLAKAVATEC   F +V   
Sbjct: 248 VKKSILDTVQLPLLHKDLFASGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 427

Query: 302 TLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSRGASGE 347
            L + + GESE+ VR +F  AR+  P  IF DE+DSL  + G   E
Sbjct: 428 ELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPASGMLSE 565


>AV408284 
          Length = 425

 Score =  112 bits (279), Expect = 2e-25
 Identities = 65/148 (43%), Positives = 89/148 (59%), Gaps = 2/148 (1%)
 Frame = +1

Query: 239 LTEAKRLLEEAVVLPLWMPEYFQG--IRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFF 296
           L   K  L E V+LPL  P+ F    +  P KGVL++GPPGTGKT+LAKA+A E G  F 
Sbjct: 1   LESIKEALFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFI 180

Query: 297 NVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSRGASGEHESSRRVKS 356
           NV  + L SKW G+++++V  +F LA    P+ IFIDE+DS    R  + +HE+   +K+
Sbjct: 181 NVRISNLMSKWFGDAQKLVAAVFSLAHKLQPAIIFIDEVDSFLGQRRTT-DHEALLNMKT 357

Query: 357 ELLVQVDGVSNTATNEDGSRKIVMVLAA 384
           E +   DG     T +  +R  VMVLAA
Sbjct: 358 EFMALWDGF----TTDQNAR--VMVLAA 423


>TC16349 homologue to UP|PRS6_SOLTU (P54778) 26S protease regulatory subunit
           6B homolog, partial (65%)
          Length = 901

 Score =  105 bits (262), Expect = 2e-23
 Identities = 60/139 (43%), Positives = 83/139 (59%), Gaps = 3/139 (2%)
 Frame = +3

Query: 229 PGVRWEDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAV 287
           P V + D+ G    K+ + EAV LPL   E ++ I   P +GVL++GPPGTGKT+LAKAV
Sbjct: 483 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 662

Query: 288 ATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSR--GAS 345
           A      F  V  +    K+ GE  RMVR +F LA+  AP+ IFIDE+D++  +R    +
Sbjct: 663 ANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQT 842

Query: 346 GEHESSRRVKSELLVQVDG 364
           G     +R+  ELL Q+DG
Sbjct: 843 GADREVQRILMELLNQMDG 899


>CB826675 
          Length = 551

 Score =  102 bits (253), Expect = 2e-22
 Identities = 61/147 (41%), Positives = 88/147 (59%), Gaps = 4/147 (2%)
 Frame = +1

Query: 225 LETSPGVRWEDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLL 283
           ++  P   + DV GL +  + L EA+VLP+   E FQ +  RP KGVL++GPPGTGKTL+
Sbjct: 109 VDEKPTEDYNDVGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLM 288

Query: 284 AKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSR- 342
           A+A A +   TF  ++   L   + G+  ++VR  F LA+  +P  IFIDEID++   R 
Sbjct: 289 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRF 468

Query: 343 --GASGEHESSRRVKSELLVQVDGVSN 367
               SG+ E  +R   ELL Q+DG S+
Sbjct: 469 DSEVSGDRE-VQRTMLELLNQLDGFSS 546


>CN825587 
          Length = 663

 Score = 91.3 bits (225), Expect = 3e-19
 Identities = 55/163 (33%), Positives = 97/163 (58%), Gaps = 4/163 (2%)
 Frame = +2

Query: 322 ARAYAPSTIFIDEIDSLCNSRGAS--GEHESSRRVKSELLVQVDGVSNTATNEDGSRKIV 379
           A++ AP  +FIDEID++   RGA   G ++   +  ++LL ++DG S  +         V
Sbjct: 2   AKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSG--------V 157

Query: 380 MVLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDEVAR 437
           +VLAATN P  +D AL R  R ++++ +  P+   R ++++++ +   +A DV+ D++AR
Sbjct: 158 IVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFDKIAR 337

Query: 438 RTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDDIS 480
           RT G++G DL N+  +A++   RR        ++K +SKD+IS
Sbjct: 338 RTPGFTGADLQNLMNEAAILAARR--------DLKEISKDEIS 442


>TC9051 UP|PRS7_ARATH (Q9SSB5) 26S protease regulatory subunit 7 (26S
           proteasome subunit 7) (26S proteasome AAA-ATPase subunit
           RPT1a) (Regulatory particle triple-A ATPase subunit 1a),
           partial (46%)
          Length = 867

 Score = 86.7 bits (213), Expect = 9e-18
 Identities = 54/170 (31%), Positives = 94/170 (54%), Gaps = 5/170 (2%)
 Frame = +2

Query: 298 VSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSR---GASGEHESSRRV 354
           V  + L  K+ GE  RMVR LF +AR+     +F DE+D++  +R   G  G++E  R +
Sbjct: 8   VIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTM 187

Query: 355 KSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRIYIPLPNFES 412
             E++ Q+DG          +R  + VL ATN P  +D AL R  RL++++   LP+ ES
Sbjct: 188 L-EIVNQLDGFD--------ARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLES 340

Query: 413 RKELIRINLKTVEVAPDVNIDEVARRTDGYSGDDLTNVCRDASLNGMRRK 462
           R ++ +I+ +T+    D+  + ++R     +G D+ +VC +A +  +R +
Sbjct: 341 RTQIFKIHTRTMNCERDIRFELLSRLCPNSTGADIRSVCTEAGMYAIRAR 490


>AV421390 
          Length = 409

 Score = 80.9 bits (198), Expect = 5e-16
 Identities = 54/125 (43%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
 Frame = +2

Query: 220 LERDVLETSPGVRWEDVAGLTEAKRLLEEAVVLPLWMPEYFQ--GIRRPWKGVLMFGPPG 277
           L ++V+       ++DV G  +AK+ LEE VV  L  P  F   G + P KG+L+ G PG
Sbjct: 29  LNKEVMPEKNVKTFKDVKGCDDAKQELEE-VVEYLRNPAKFTRLGGKLP-KGILLTGAPG 202

Query: 278 TGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDS 337
           TGKTLLAKA+A E G  FF  + +     + G   R VR LF  A+  AP  IFIDEID+
Sbjct: 203 TGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDA 382

Query: 338 LCNSR 342
           + ++R
Sbjct: 383 VGSTR 397


>TC12379 homologue to UP|O04327 (O04327) Cell division protein FtsH isolog,
           partial (15%)
          Length = 505

 Score = 79.3 bits (194), Expect = 1e-15
 Identities = 53/150 (35%), Positives = 83/150 (55%), Gaps = 5/150 (3%)
 Frame = +1

Query: 316 RCLFDLARAYAPSTIFIDEIDSLCNSRG---ASGEHESSRRVKSELLVQVDGVSNTATNE 372
           R L+  A+  APS +FIDE+D++   RG    SG  E    + ++LLV +DG        
Sbjct: 61  RALYQEAKENAPSVVFIDELDAVGRERGLIKGSGGQERDATL-NQLLVCLDGFEG----- 222

Query: 373 DGSRKIVMVLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIRINLKTVEVAPDV 430
              R  V+ +A+TN P  +D AL R  R +++I+IP P    R E+++++ +   +A DV
Sbjct: 223 ---RGEVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRIEILKVHARKKPIAGDV 393

Query: 431 NIDEVARRTDGYSGDDLTNVCRDASLNGMR 460
           +   VA  TDG  G +L N+   A++N MR
Sbjct: 394 DYMAVASMTDGMVGAELANIVEVAAINMMR 483


>TC16655 homologue to UP|O99018 (O99018) Chloroplast protease precursor,
           partial (39%)
          Length = 934

 Score = 77.0 bits (188), Expect = 7e-15
 Identities = 49/104 (47%), Positives = 62/104 (59%), Gaps = 2/104 (1%)
 Frame = +3

Query: 225 LETSPGVRWEDVAGLTEAKRLLEEAVVLPLWMPEYFQ--GIRRPWKGVLMFGPPGTGKTL 282
           +E + GV ++DVAG+ EAK+   E V   L  PE F   G R P KGVL+ GPPGTGKTL
Sbjct: 627 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGARIP-KGVLLIGPPGTGKTL 800

Query: 283 LAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYA 326
           LAKA+A E G  FF++S +     + G     VR LF  A+  A
Sbjct: 801 LAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENA 932


>CN825067 
          Length = 687

 Score = 66.6 bits (161), Expect = 9e-12
 Identities = 46/157 (29%), Positives = 82/157 (51%), Gaps = 1/157 (0%)
 Frame = +1

Query: 266 PWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLA-RA 324
           P++ +L +GPPGTGKT+ A+ +A + G  +  ++   +A     ++   +  LFD + ++
Sbjct: 187 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVA-PLGSQAVTKIHELFDWSKKS 363

Query: 325 YAPSTIFIDEIDSLCNSRGASGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAA 384
                +FIDE D+    R  +   E+ R   + LL +           D S+ IV+ L A
Sbjct: 364 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG---------DQSKDIVLAL-A 513

Query: 385 TNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINL 421
           TN P D+D A+  R+++ +  PLP    R +L+++ L
Sbjct: 514 TNRPGDLDSAVADRIDEVLEFPLPGEGERYKLLKLYL 624


>TC10924 homologue to UP|Q8H9D4 (Q8H9D4) 26S proteasome AAA-ATPase subunit
           RPT4a, partial (49%)
          Length = 648

 Score = 65.9 bits (159), Expect = 2e-11
 Identities = 39/85 (45%), Positives = 52/85 (60%), Gaps = 2/85 (2%)
 Frame = +2

Query: 213 DPELAEMLERDVLETSPG-VRWEDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGV 270
           DP +  ML  D     PG V +  V GL++  R L E++ LPL  PE F  +  +P KGV
Sbjct: 407 DPVVYNMLHED-----PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 571

Query: 271 LMFGPPGTGKTLLAKAVATECGTTF 295
           L++GPPGTGKTLLA+A+A+     F
Sbjct: 572 LLYGPPGTGKTLLARAIASNIDANF 646


>AV422700 
          Length = 472

 Score = 61.6 bits (148), Expect = 3e-10
 Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
 Frame = +2

Query: 220 LERDVLETSPGVRW---EDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPW-KGVLMFGP 275
           +E  +  ++   +W   E + G TEA   L E ++ P       + +   W +G+L++GP
Sbjct: 155 MESSMSSSNSNNQWRAEEAIGGNTEALEALRELIIFPQRFSHEARKLGLKWPRGLLLYGP 334

Query: 276 PGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLF 319
           PGTGKT L +AV  ECG     +S  ++     GESER++R  F
Sbjct: 335 PGTGKTSLVRAVVQECGAHLTIISPHSVHRAHAGESERILREAF 466


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.313    0.131    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,977,404
Number of Sequences: 28460
Number of extensions: 105371
Number of successful extensions: 689
Number of sequences better than 10.0: 96
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of query: 518
length of database: 4,897,600
effective HSP length: 94
effective length of query: 424
effective length of database: 2,222,360
effective search space: 942280640
effective search space used: 942280640
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)