TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0226.2
         (583 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC10521                                                               108  2e-24
TC15534 weakly similar to GB|AAO63420.1|28950993|BT005356 At5g28...    35  0.026
TC14310 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, partial (92%)     33  0.17
BP069323                                                               31  0.64
TC8412 weakly similar to UP|Q9LW00 (Q9LW00) Genomic DNA, chromos...    30  0.83
TC14320 similar to UP|Q41111 (Q41111) Dehydrin, partial (56%)          30  0.83
AV408295                                                               30  1.4
TC20256 similar to UP|CYB_LAMGT (Q94T68) Cytochrome b, partial (6%)    29  2.4
BP049555                                                               28  3.2
TC8582 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetyla...    28  3.2
TC19410 weakly similar to AAR24668 (AAR24668) At1g24040, partial...    28  4.1
AV428867                                                               28  4.1
TC10293 similar to UP|Q84TG3 (Q84TG3) At2g35930, partial (19%)         28  4.1
TC16303 weakly similar to UP|AGA1_YEAST (P32323) A-agglutinin at...    28  4.1
BI418928                                                               28  5.4
TC8736 similar to PIR|T06396|T06396 isoprenylated protein - soyb...    28  5.4
AV424967                                                               27  7.0
BI418191                                                               27  9.2
TC11723 similar to UP|Q9SC91 (Q9SC91) Glutamine synthetase I  (G...    27  9.2

>TC10521 
          Length = 751

 Score =  108 bits (270), Expect = 2e-24
 Identities = 57/84 (67%), Positives = 64/84 (75%), Gaps = 1/84 (1%)
 Frame = +2

Query: 501 VHKLLGTVLLDQDAALRWKVRCAEYFPYSRYFEGSRSSASSNTALKQLSKNS-ENETLNH 559
           VHKLLGTVL+D+DA LRWKVRCAE FPYS YFEG  SSAS N+AL Q+ K S EN + +H
Sbjct: 5   VHKLLGTVLVDKDAXLRWKVRCAEIFPYSVYFEGRHSSASPNSALNQICKKSFENGSSSH 184

Query: 560 SVCTQNVGSITSNGKLEAFKQLAI 583
           SV    V SITSNGKL+ FK L I
Sbjct: 185 SVGNCKVESITSNGKLDTFKDLTI 256


>TC15534 weakly similar to GB|AAO63420.1|28950993|BT005356 At5g28040
           {Arabidopsis thaliana;}, partial (8%)
          Length = 937

 Score = 35.4 bits (80), Expect = 0.026
 Identities = 21/79 (26%), Positives = 35/79 (43%), Gaps = 1/79 (1%)
 Frame = -3

Query: 286 LHDSPPKSTAEEDEEMSKLLPAQKKKMRQKQRKAEARAKKGAEEKNE-ELSASGVSKSGK 344
           L D P  S++ E EE      +Q K    ++ +  +  +  +EE+ E E +A     +  
Sbjct: 860 LEDPPTASSSSESEEEDDQPLSQVKHAAAEEEELSSEEEGSSEEEEEDETTAPAPPAATT 681

Query: 345 RHVKPVDPDPHGEKLLQVD 363
            H KP  P+P  +   Q D
Sbjct: 680 SHTKPPQPEPESDSATQSD 624


>TC14310 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, partial (92%)
          Length = 502

 Score = 32.7 bits (73), Expect = 0.17
 Identities = 18/55 (32%), Positives = 32/55 (57%), Gaps = 1/55 (1%)
 Frame = +3

Query: 286 LHDSPPKSTAEEDEEMSKLLPAQKKKMRQKQRKAEAR-AKKGAEEKNEELSASGV 339
           L   PP + A+ +++ ++  PA +K   +K+ KAE + AK+G  EK ++ S   V
Sbjct: 39  LSSPPPMAPAKAEKKPAEKKPAAEKAPAEKKPKAEKKIAKEGGSEKKKKKSKKSV 203


>BP069323 
          Length = 404

 Score = 30.8 bits (68), Expect = 0.64
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 418 PDSHRCLVCQLHEKTLFEANNSFLEKH 444
           P +H CL C + EKTLF      L  H
Sbjct: 265 PSTHLCLACSVSEKTLFTCKTQTLPHH 185


>TC8412 weakly similar to UP|Q9LW00 (Q9LW00) Genomic DNA, chromosome 3, P1
           clone: MSJ11, partial (39%)
          Length = 1403

 Score = 30.4 bits (67), Expect = 0.83
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 289 SPPKSTAEEDEEMSKLLPAQKKKMRQKQRKAEARAK 324
           +P ++ A++ + + K+LP +K+K RQK  K +   K
Sbjct: 376 TPQRNVAKDHQLLKKMLPGKKRKRRQKMWKCKKLVK 483


>TC14320 similar to UP|Q41111 (Q41111) Dehydrin, partial (56%)
          Length = 1231

 Score = 30.4 bits (67), Expect = 0.83
 Identities = 26/88 (29%), Positives = 37/88 (41%), Gaps = 18/88 (20%)
 Frame = +3

Query: 285 KLHDSPPKSTAEEDEEMSKLLPAQKKKMRQKQRK-----------------AEARAKKGA 327
           KLH S   S++  DEE  K    +KKK ++K++K                 A A  KKG 
Sbjct: 579 KLHRSDSSSSSSSDEEEGK-EGEEKKKKKKKEKKEVKSTDENTSVPVEVDPAHAEEKKGF 755

Query: 328 EEK-NEELSASGVSKSGKRHVKPVDPDP 354
            +K  E+L   G   + +    P  P P
Sbjct: 756 LDKIKEKLPGHGKKTTEEATTSPPPPPP 839


>AV408295 
          Length = 426

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
 Frame = +3

Query: 285 KLHDSPPKSTAEE----DEEMSKLLPAQKKKMRQKQRKAEAR--AKKGAEEKN-EELSAS 337
           K+ +   K T EE    +EE  + +  ++KK  ++++KAEA   A    EEKN  E    
Sbjct: 186 KVEEEEEKKTEEEKKPAEEEKKEEVVEEEKKPAEEEKKAEAEGEATTSGEEKNVVEAVTE 365

Query: 338 GVSKSGKRHVKPV 350
            V ++G++ V+ +
Sbjct: 366 VVVEAGEKTVEAI 404


>TC20256 similar to UP|CYB_LAMGT (Q94T68) Cytochrome b, partial (6%)
          Length = 543

 Score = 28.9 bits (63), Expect = 2.4
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = -1

Query: 293 STAEEDEEMSKLLPAQKKKMRQKQRKAEARAKKGAEEKNEELSA 336
           S ++ED++  K       K ++K++KAE+ AKK   ++ E+L A
Sbjct: 543 SDSKEDDKTDK-----NNKKKKKKKKAESNAKKPKSDRFEKLEA 427


>BP049555 
          Length = 555

 Score = 28.5 bits (62), Expect = 3.2
 Identities = 20/88 (22%), Positives = 40/88 (44%)
 Frame = +2

Query: 302 SKLLPAQKKKMRQKQRKAEARAKKGAEEKNEELSASGVSKSGKRHVKPVDPDPHGEKLLQ 361
           S  L    ++ +Q+Q +AEA+ ++  EEK EE +    +   K+     +  P  EK  +
Sbjct: 206 STFLEQMGEEAKQEQPQAEAKPEEKTEEKAEEKAEEKPAAEEKKE----EEKPEEEKKEE 373

Query: 362 VDDPLSEAIKYLKLLQKNSPDSLETHLL 389
              P +  + Y+ L        +E +++
Sbjct: 374 EPKPPAPCVLYVDLHCVGCAKKIERYMM 457



 Score = 26.9 bits (58), Expect = 9.2
 Identities = 15/59 (25%), Positives = 32/59 (53%), Gaps = 3/59 (5%)
 Frame = +3

Query: 292 KSTAEEDEEMSKLLPAQKKKMRQKQRKAEARA---KKGAEEKNEELSASGVSKSGKRHV 347
           K   +++    +L P+Q+K+ R+KQRK + ++   +K    K+++      S + + HV
Sbjct: 222 KWVRKQNRNNLRLKPSQRKRQRKKQRKKQRKSLQLRKRRRRKSQKRRRRKKSLNHQLHV 398


>TC8582 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
           HD2-P39, partial (65%)
          Length = 1341

 Score = 28.5 bits (62), Expect = 3.2
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = +1

Query: 288 DSPPKSTAEEDEEMSKLLPAQKKKMRQKQRKAEARAKKGAEEKNEELSASGVSKSGKRHV 347
           DS  +S  E D+E     PA  KK+ Q +++    A K      +  +A+     GK++V
Sbjct: 616 DSDDESDDESDDEEETPTPA--KKVDQGKKRPNESASKTPVSGKKAKNATPEKPDGKKNV 789

Query: 348 KPVDPDP 354
               P P
Sbjct: 790 HTATPHP 810


>TC19410 weakly similar to AAR24668 (AAR24668) At1g24040, partial (28%)
          Length = 606

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 17/41 (41%), Positives = 23/41 (55%), Gaps = 2/41 (4%)
 Frame = -2

Query: 343 GKRHVKPVDPDPHGE--KLLQVDDPLSEAIKYLKLLQKNSP 381
           G   V+P DPDPHG   +L+ V++   E  + LKLL    P
Sbjct: 416 GVHLVRPHDPDPHGSGFQLVGVEEGF-EGFELLKLLVGEKP 297


>AV428867 
          Length = 628

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 266 LHSHSYFHKAAAGAIRCYIKLHDSPPKSTA 295
           L    +FHK   G  +C++K+   PPK TA
Sbjct: 511 LRKSFFFHKGWLGVFKCFLKIW--PPKQTA 594


>TC10293 similar to UP|Q84TG3 (Q84TG3) At2g35930, partial (19%)
          Length = 757

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 10/19 (52%), Positives = 12/19 (62%)
 Frame = -2

Query: 411 LRLDAEHPDSHRCLVCQLH 429
           LRL  +HP   RC+VC  H
Sbjct: 543 LRLKTQHPQQLRCIVCLFH 487


>TC16303 weakly similar to UP|AGA1_YEAST (P32323) A-agglutinin attachment
           subunit precursor, partial (3%)
          Length = 1235

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
 Frame = +1

Query: 288 DSPPKSTAEEDEEMSKLLPAQKKKMRQKQRKAE---------ARAKKGAEEKNEELSASG 338
           ++P     EED+E++ L    KKK + ++  AE         A  +  AEE + EL+  G
Sbjct: 727 EAPQAEEGEEDDEINDLFKMGKKKKKNERSPAEIALLVENVMAELEVTAEE-DAELNRQG 903

Query: 339 VSKSGKRHVKPVDPDPHGEKLLQVD 363
                K    P+  +   +K LQ++
Sbjct: 904 KPAINKLKKLPLLTEVLSKKQLQLE 978


>BI418928 
          Length = 496

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 23/104 (22%), Positives = 46/104 (44%)
 Frame = +3

Query: 221 RALKKFLGVEKHYADINEDQFDFHSYCLRKMTLRTYLEMLKFQDQLHSHSYFHKAAAGAI 280
           RAL+ F GVE   AD++ +          K+T+   ++  K +D+L   +  +     + 
Sbjct: 105 RALRNFNGVEDVKADLSGN----------KLTVIGKVDPTKVRDKLAEKTNKNVELVSSP 254

Query: 281 RCYIKLHDSPPKSTAEEDEEMSKLLPAQKKKMRQKQRKAEARAK 324
                  D PP     E++  +     +++K +  ++KAE + K
Sbjct: 255 PKKDAAGDKPPPEKKPEEKPKTDDKKPEEEKTKPDEKKAEEKTK 386


>TC8736 similar to PIR|T06396|T06396 isoprenylated protein - soybean
           (fragment) {Glycine max;}, partial (84%)
          Length = 1268

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 21/68 (30%), Positives = 29/68 (41%), Gaps = 4/68 (5%)
 Frame = +2

Query: 291 PKSTAE----EDEEMSKLLPAQKKKMRQKQRKAEARAKKGAEEKNEELSASGVSKSGKRH 346
           PK+ AE    +D E  K    +KKK   K++      KKG E+  ++         G   
Sbjct: 551 PKAAAEPEKKKDSEKPKAAEPEKKKDGDKEKPKSDGPKKGDEKPKDK------PAPGPIP 712

Query: 347 VKPVDPDP 354
           V PV P P
Sbjct: 713 VHPVGPPP 736


>AV424967 
          Length = 344

 Score = 27.3 bits (59), Expect = 7.0
 Identities = 10/35 (28%), Positives = 18/35 (50%)
 Frame = +1

Query: 493 WKLKDCIAVHKLLGTVLLDQDAALRWKVRCAEYFP 527
           WKLK+  A   +LG+ +        W ++  ++FP
Sbjct: 1   WKLKEIFATGVVLGSYMALMTVVFFWLIKDTDFFP 105


>BI418191 
          Length = 652

 Score = 26.9 bits (58), Expect = 9.2
 Identities = 12/28 (42%), Positives = 16/28 (56%)
 Frame = -1

Query: 520 VRCAEYFPYSRYFEGSRSSASSNTALKQ 547
           +RC   F YSR    S S+ SSN + K+
Sbjct: 403 IRCRMVFKYSRSLGSSESNKSSNLSTKE 320


>TC11723 similar to UP|Q9SC91 (Q9SC91) Glutamine synthetase I
           (Glutamate--ammonia ligase) , partial (17%)
          Length = 528

 Score = 26.9 bits (58), Expect = 9.2
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = +3

Query: 348 KPVDPDPHGEKLLQVDDPLSEAIKYLKLLQKNSPDSLETHLLSFELYTRKQKVLLTFQAV 407
           +PVD DP+ E L ++   LSE+++ L     N  D L+  +          K+L  F+A+
Sbjct: 21  EPVDADPNPENLQRLPKSLSESLEAL-----NKDDFLKEFI--------DDKLLTAFKAI 161

Query: 408 KQ 409
           ++
Sbjct: 162 RK 167


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,400,021
Number of Sequences: 28460
Number of extensions: 124109
Number of successful extensions: 676
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of query: 583
length of database: 4,897,600
effective HSP length: 95
effective length of query: 488
effective length of database: 2,193,900
effective search space: 1070623200
effective search space used: 1070623200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)