TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0223.4
         (336 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV423488                                                               44  3e-05
AV410260                                                               29  0.98
TC11485                                                                29  1.3
TC12587 weakly similar to UP|Q93XA2 (Q93XA2) TGA-type basic leuc...    28  2.8
TC15035                                                                27  3.7
BP058612                                                               27  4.8
TC10344                                                                27  4.8
TC8133 similar to GB|BAA97157.1|8809606|AB018117 ethylene respon...    27  4.8
BP048490                                                               27  4.8
TC17051 similar to UP|Q9ZRR7 (Q9ZRR7) SAP1 protein, partial (37%)      27  4.8
BP039174                                                               27  6.3
AV771330                                                               26  8.3
TC16554 homologue to UP|AAN71719 (AAN71719) Glycogen synthase ki...    26  8.3
BP033161                                                               26  8.3

>AV423488 
          Length = 487

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 24/78 (30%), Positives = 38/78 (47%), Gaps = 3/78 (3%)
 Frame = +3

Query: 47  EDQSSGKKRTR---WRVKDDLLLVQSWLNISKDPTVGTDQTAAKFWDRIRDQFDEYRDFD 103
           ED +   K+T    W    +L+L+  W+N      VG +Q    FW  I +  +E+  FD
Sbjct: 243 EDTTPKSKKTHSPAWSTAQNLVLISRWINRGTSSVVGKNQKGETFWRDIAEYCNEHCSFD 422

Query: 104 TPPRTGKMLKCRFGKLSK 121
            PPR G   + R+  ++K
Sbjct: 423 -PPRDGIACRNRWNYMNK 473


>AV410260 
          Length = 373

 Score = 29.3 bits (64), Expect = 0.98
 Identities = 31/125 (24%), Positives = 45/125 (35%), Gaps = 10/125 (8%)
 Frame = +2

Query: 133 VTTPW------KSGHSEKDIMAEAHALFQVD----HKKDFTHENVWRMVKDEPKWKGQSM 182
           ++TPW      +S  S K + A + A+        H+K     N              S 
Sbjct: 59  ISTPWP*WIPPRSASSTKTVTASSAAVTSTT*SSPHQKPARSSNA-------------SP 199

Query: 183 KTNSRGQKKSGAGADGTSTDPSASIDCDEYEATPPTTRPKGKKAEKRKAKTTDTASSTLS 242
           KTNS    K+ + A  TS+ PSA           P+  P  + A    A +  T   T S
Sbjct: 200 KTNSSTSSKTPSSATPTSSSPSA-----------PSPTPTSRSASFSSAASAGTPPPTAS 346

Query: 243 FVPHP 247
            +  P
Sbjct: 347 ALSSP 361


>TC11485 
          Length = 572

 Score = 28.9 bits (63), Expect = 1.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 213 EATPPTTRPKGKKAEKRKAKTTDT 236
           E  PP  + KG+K  KRK KTT+T
Sbjct: 441 ETRPPRQKQKGQKHIKRKNKTTNT 370


>TC12587 weakly similar to UP|Q93XA2 (Q93XA2) TGA-type basic leucine zipper
           protein TGA1.1, partial (22%)
          Length = 575

 Score = 27.7 bits (60), Expect = 2.8
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +2

Query: 278 QQLKQSELQLRQEELKFKKAENFRAY----MDILNKNTSG 313
           QQL+ S L+L Q EL+ KKA N   Y    +D+    +SG
Sbjct: 422 QQLETSRLKLMQLELEVKKARNQGLYTGSGLDVSYMGSSG 541


>TC15035 
          Length = 650

 Score = 27.3 bits (59), Expect = 3.7
 Identities = 15/46 (32%), Positives = 23/46 (49%)
 Frame = +2

Query: 100 RDFDTPPRTGKMLKCRFGKLSKDIQFFTGCYNKVTTPWKSGHSEKD 145
           R +  PPR G M +     L +  Q+    ++KVTTP+ + H   D
Sbjct: 152 RRYTGPPRVGTMRE-----LLRVTQYVQDNFSKVTTPFLTAHGTAD 274


>BP058612 
          Length = 368

 Score = 26.9 bits (58), Expect = 4.8
 Identities = 15/51 (29%), Positives = 25/51 (48%), Gaps = 5/51 (9%)
 Frame = -3

Query: 199 TSTDPSASIDCDEYEATPPTTRPKGKKAEKRKAKTT-----DTASSTLSFV 244
           +S  PSAS  C     + P +RP  +    R++ T+      TAS++  F+
Sbjct: 225 SSLPPSASTPCGSVAPSSPRSRPSSRCGSPRRSTTSLVPRLSTASASKRFL 73


>TC10344 
          Length = 616

 Score = 26.9 bits (58), Expect = 4.8
 Identities = 14/43 (32%), Positives = 27/43 (62%)
 Frame = +1

Query: 268 NRELDLQQADQQLKQSELQLRQEELKFKKAENFRAYMDILNKN 310
           +++   ++ + Q K+SEL+ R++ELK ++    RA + I  KN
Sbjct: 397 SKDTKAKEKELQAKESELKRREQELKRREDAIARAGIVIEEKN 525


>TC8133 similar to GB|BAA97157.1|8809606|AB018117 ethylene responsive
           element binding factor 5 (ATERF5) {Arabidopsis
           thaliana;} , partial (22%)
          Length = 785

 Score = 26.9 bits (58), Expect = 4.8
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = +2

Query: 176 KWKGQSMKTNSRGQKKSGAGADGTSTDPSASIDCDEYEATPPTTRPK 222
           +W+ +   T    + +  +    + T  SA +D     +TPP+  PK
Sbjct: 584 RWRWRRSTTEESAKDRGASSPPRSGTRTSADLDFGSEHSTPPSKPPK 724


>BP048490 
          Length = 452

 Score = 26.9 bits (58), Expect = 4.8
 Identities = 17/66 (25%), Positives = 28/66 (41%), Gaps = 1/66 (1%)
 Frame = +3

Query: 23  SDTQCEATPDDTQHEGLDDIDLEDEDQSSGKKRTRWRVKD-DLLLVQSWLNISKDPTVGT 81
           SD+  E   D    +  D  +  DE+     K  + +VKD +++   S  N  K P   T
Sbjct: 147 SDSDSEVKKDKMDVDESDSSEDSDEEDEKSTKTPQKKVKDVEMVDASSGKNAPKTPAAQT 326

Query: 82  DQTAAK 87
           +   +K
Sbjct: 327 ENEGSK 344


>TC17051 similar to UP|Q9ZRR7 (Q9ZRR7) SAP1 protein, partial (37%)
          Length = 611

 Score = 26.9 bits (58), Expect = 4.8
 Identities = 14/66 (21%), Positives = 29/66 (43%)
 Frame = +3

Query: 221 PKGKKAEKRKAKTTDTASSTLSFVPHPDVLAMGKAKMEMMANFREIRNRELDLQQADQQL 280
           P       +K+ +    ++ LSF PH   +A G+   + +  F +   RE+ +  A   +
Sbjct: 327 PSSPSYSSKKSNSLSLGNAGLSFTPHVITVAAGEDVGQKIMLFMQQSRREVCILSASGSI 506

Query: 281 KQSELQ 286
             + L+
Sbjct: 507 SNASLR 524


>BP039174 
          Length = 564

 Score = 26.6 bits (57), Expect = 6.3
 Identities = 14/41 (34%), Positives = 23/41 (55%)
 Frame = +1

Query: 228 KRKAKTTDTASSTLSFVPHPDVLAMGKAKMEMMANFREIRN 268
           ++  KT+ T+S+T SF  HP  +A   +   M +  + IRN
Sbjct: 163 EKSLKTSSTSSTTPSFRNHPANIAEASSPTIMPSFSKSIRN 285


>AV771330 
          Length = 537

 Score = 26.2 bits (56), Expect = 8.3
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = -3

Query: 217 PTTRPKGKKAEKRKAKTTDTASSTLSFVPHPDVLAMGKAKMEMMANF 263
           P   P+   +   + K  D  + +  F PHPD+L+    ++ +  N+
Sbjct: 373 PAYAPRLLSSTITRTKKVDCTACSQCFSPHPDLLSTVATRIPVTTNY 233


>TC16554 homologue to UP|AAN71719 (AAN71719) Glycogen synthase kinase 3 beta
           protein kinase DWARF12 , partial (71%)
          Length = 927

 Score = 26.2 bits (56), Expect = 8.3
 Identities = 9/38 (23%), Positives = 21/38 (54%)
 Frame = +2

Query: 138 KSGHSEKDIMAEAHALFQVDHKKDFTHENVWRMVKDEP 175
           K G   + ++   + L+++DH + F+ +N W + +  P
Sbjct: 209 KMGSPNRLLVTWQNGLWELDHLELFSRQNAWNLERRSP 322


>BP033161 
          Length = 472

 Score = 26.2 bits (56), Expect = 8.3
 Identities = 17/55 (30%), Positives = 30/55 (53%), Gaps = 5/55 (9%)
 Frame = +3

Query: 261 ANFREIRNRELDLQQADQQLKQSE-----LQLRQEELKFKKAENFRAYMDILNKN 310
           A FR+I+ R+ +LQQA  +++Q       LQ+R E ++    E  +A  +   K+
Sbjct: 21  AKFRDIQERKGELQQAIVKMEQGGSADGILQVRAERIQSDLEELLKALAERCKKH 185


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.313    0.129    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,489,483
Number of Sequences: 28460
Number of extensions: 67862
Number of successful extensions: 365
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of query: 336
length of database: 4,897,600
effective HSP length: 91
effective length of query: 245
effective length of database: 2,307,740
effective search space: 565396300
effective search space used: 565396300
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)