BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0223.2
(365 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC11748 weakly similar to UP|O82076 (O82076) Lipase homolog (Fra... 367 e-102
CN825151 150 2e-37
AW720418 124 2e-29
TC10971 similar to UP|Q40318 (Q40318) Coil protein, partial (42%) 107 4e-24
BG662148 99 9e-22
TC11166 weakly similar to UP|Q9FXJ3 (Q9FXJ3) F1K23.17, partial (... 96 7e-21
AV773399 94 5e-20
TC10972 similar to UP|Q40318 (Q40318) Coil protein, partial (32%) 89 2e-18
TC13503 similar to UP|Q8W0Y7 (Q8W0Y7) Enod8.3 (Fragment), partia... 85 2e-17
AV765573 84 4e-17
BP059660 82 1e-16
BP058564 80 4e-16
TC12415 similar to UP|Q9LII9 (Q9LII9) Genomic DNA, chromosome 3,... 80 4e-16
BI419094 79 9e-16
BG662032 76 8e-15
TC14231 76 1e-14
CB827193 74 3e-14
AV766515 70 7e-13
TC9321 similar to UP|O04320 (O04320) Proline-rich protein APG is... 67 4e-12
TC10139 similar to UP|Q9SVU5 (Q9SVU5) Proline-rich APG-like prot... 66 8e-12
>TC11748 weakly similar to UP|O82076 (O82076) Lipase homolog (Fragment),
partial (48%)
Length = 679
Score = 367 bits (943), Expect = e-102
Identities = 173/173 (100%), Positives = 173/173 (100%)
Frame = +3
Query: 193 TEIENAVKSLYNEGARKFWVHNTGPLGCLPKILALAQKKDLDLFGCLSSYNSAARLFNEA 252
TEIENAVKSLYNEGARKFWVHNTGPLGCLPKILALAQKKDLDLFGCLSSYNSAARLFNEA
Sbjct: 3 TEIENAVKSLYNEGARKFWVHNTGPLGCLPKILALAQKKDLDLFGCLSSYNSAARLFNEA 182
Query: 253 LYHSSQKLRTRLKDATLVYVDIYAIKHDLIANATKYGFSNPLTVCCGFGGPPYNFDLRVT 312
LYHSSQKLRTRLKDATLVYVDIYAIKHDLIANATKYGFSNPLTVCCGFGGPPYNFDLRVT
Sbjct: 183 LYHSSQKLRTRLKDATLVYVDIYAIKHDLIANATKYGFSNPLTVCCGFGGPPYNFDLRVT 362
Query: 313 CGQPGYQVCDEGSRYVNWDGTHHTEAANTFIASKILSTDYSTPRTPFEFFCHR 365
CGQPGYQVCDEGSRYVNWDGTHHTEAANTFIASKILSTDYSTPRTPFEFFCHR
Sbjct: 363 CGQPGYQVCDEGSRYVNWDGTHHTEAANTFIASKILSTDYSTPRTPFEFFCHR 521
>CN825151
Length = 740
Score = 150 bits (380), Expect = 2e-37
Identities = 87/207 (42%), Positives = 130/207 (62%), Gaps = 14/207 (6%)
Frame = +1
Query: 30 CDVPAVLFVFGDSNSDTGGLTSGLGFPINLPNGRTFFHRSTGRLSDGRLVIDLLCQSLNT 89
C PA+ + FGDSNSDTGG+++ PI P G +F + + R DGRL++D + + LN
Sbjct: 91 CAFPAI-YNFGDSNSDTGGISAAFE-PIPPPYGESFPQKPSARDCDGRLIVDFIAEKLNL 264
Query: 90 RFLTPYLDSLSGSSFTNGANFAVVGSS------TLPKY--VPFSLNIQVMQFLHFKARTL 141
+L+ YL+SL G+++ +GANFA GS+ T+ +Y PFSL++Q +QF FKART
Sbjct: 265 PYLSAYLNSL-GTNYRHGANFATGGSTIRRQNETIFQYGISPFSLDMQFVQFKQFKARTK 441
Query: 142 ELVSAGAKNVIN------DEGFRAALYLIDIGQNDLADSFAKNLTYVQVIKKIPTVITEI 195
+L AK + E F ALY DIGQNDL+ F + + + Q+ + +P ++ ++
Sbjct: 442 QLYQE-AKTALERSKLPVPEEFSKALYTFDIGQNDLSVGF-RMMNFDQMRESMPDIVNQL 615
Query: 196 ENAVKSLYNEGARKFWVHNTGPLGCLP 222
+AVK++Y G R FW+HNT P+GCLP
Sbjct: 616 ASAVKNIYELGGRTFWIHNTAPIGCLP 696
>AW720418
Length = 500
Score = 124 bits (311), Expect = 2e-29
Identities = 70/166 (42%), Positives = 99/166 (59%), Gaps = 7/166 (4%)
Frame = +3
Query: 136 FKARTLELVSAGA----KNVINDEGFRAALYLIDIGQNDLADSFAKNLTYVQVIKKIPTV 191
FK RT L + ++ E F ALY+ DIGQNDL+ F + + Q+ +P +
Sbjct: 3 FKLRTQILFNGTV*IFXSSIPRXEDFSRALYMFDIGQNDLSYGFQYS-SEEQLRASLPNI 179
Query: 192 ITEIENAVKSLYNEGARKFWVHNTGPLGCLP-KILALAQKK--DLDLFGCLSSYNSAARL 248
+++ AV+ LY EGAR FW+HNTGP+GCLP LA + K ++D GC+ S N A
Sbjct: 180 LSQFSQAVEQLYXEGARVFWIHNTGPIGCLPLNFLAYGKSKKGNVDANGCVISQNGIAHE 359
Query: 249 FNEALYHSSQKLRTRLKDATLVYVDIYAIKHDLIANATKYGFSNPL 294
FN L + +LR +L A L+YVD+Y K++L++NA K GF NPL
Sbjct: 360 FNLQLKNQVLQLRKKLPLAKLIYVDVYKAKYELVSNARKLGFVNPL 497
>TC10971 similar to UP|Q40318 (Q40318) Coil protein, partial (42%)
Length = 615
Score = 107 bits (266), Expect = 4e-24
Identities = 62/159 (38%), Positives = 93/159 (57%), Gaps = 11/159 (6%)
Frame = +2
Query: 75 DGRLVIDLLCQSLNTRFLTPYLDSLSGSSFTNGANFAVVGSSTLPKY--VPFSLNIQVMQ 132
+GRL+ID + + L +L+ YL+S+ GS++ +GANFA G+S P Y PF L +QV Q
Sbjct: 122 NGRLIIDFITEELEIPYLSAYLNSI-GSNYRHGANFAAGGASIRPVYGFSPFYLGMQVAQ 298
Query: 133 FLHFKARTLELVSAGAKN---------VINDEGFRAALYLIDIGQNDLADSFAKNLTYVQ 183
F+ ++ L++ + N + E F ALY IDIGQNDL + + +
Sbjct: 299 FIQLQSHIENLLNQFSSNRTEPPFKSYLPRPEDFSKALYTIDIGQNDLGFGLM-HTSEEE 475
Query: 184 VIKKIPTVITEIENAVKSLYNEGARKFWVHNTGPLGCLP 222
V++ IP ++ V+ LY+ GAR FW+HNT P+GCLP
Sbjct: 476 VLRSIPEMMRNFTYDVQVLYDVGARVFWIHNTCPIGCLP 592
>BG662148
Length = 415
Score = 99.4 bits (246), Expect = 9e-22
Identities = 59/139 (42%), Positives = 88/139 (62%), Gaps = 11/139 (7%)
Frame = +2
Query: 2 SSALAFSLHLLFLFLWITSSSAAVMMSK-----CDVPAVLFVFGDSNSDTGGLTSGLGFP 56
S+ + F + + LF+++ ++++ +++ CD PA+ F FG SNSDTGG + P
Sbjct: 5 SARVEFFITQISLFVFVFTATSTTLLNPVYGGGCDFPAI-FNFGASNSDTGGYAAAFEGP 181
Query: 57 INLPNGRTFFHRSTGRLSDGRLVIDLLCQSLNTRFLTPYLDSLSGSSFTNGANFAVVGSS 116
P+G T+FHR GR SDGR++ID + QS +L+ YLDSL GS+F++GANFA +GS+
Sbjct: 182 -KPPHGDTYFHRPAGRYSDGRIIIDFIAQSFGLTYLSAYLDSL-GSNFSHGANFATLGST 355
Query: 117 -TLPKYV-----PFSLNIQ 129
LPK V PF L +Q
Sbjct: 356 IILPKNVKPRGSPFFLGVQ 412
>TC11166 weakly similar to UP|Q9FXJ3 (Q9FXJ3) F1K23.17, partial (15%)
Length = 495
Score = 96.3 bits (238), Expect = 7e-21
Identities = 48/123 (39%), Positives = 65/123 (52%)
Frame = +2
Query: 234 DLFGCLSSYNSAARLFNEALYHSSQKLRTRLKDATLVYVDIYAIKHDLIANATKYGFSNP 293
D GC+ N A +N+ L +LR A ++Y D Y L N K+GF
Sbjct: 2 DQAGCVKWLNEFAEFYNQKLQLEIHRLRELHPHANIIYADYYNAALPLYQNPQKFGFRG- 178
Query: 294 LTVCCGFGGPPYNFDLRVTCGQPGYQVCDEGSRYVNWDGTHHTEAANTFIASKILSTDYS 353
L +CCG GGP YN++ CG PG CD+ S Y+ WDG H TEAA FI+ +++ YS
Sbjct: 179 LEICCGMGGP-YNYNASAGCGSPGVIACDDPSEYIGWDGIHLTEAAYGFISDGLMNGPYS 355
Query: 354 TPR 356
P+
Sbjct: 356 FPQ 364
>AV773399
Length = 492
Score = 93.6 bits (231), Expect = 5e-20
Identities = 44/115 (38%), Positives = 66/115 (57%), Gaps = 9/115 (7%)
Frame = -1
Query: 260 LRTRLKDATLVYVDIYAIKHDLIANATKYGFSNPLTVCCGFGGPPYNFDLRVTCGQP--- 316
LR +L A++ YVD+Y++K+ LI+ A + F PL CCG GG YN+ + + CG
Sbjct: 492 LRKKLHSASITYVDVYSVKYSLISQAKTHAFGEPLRACCGHGG-KYNYYIHIGCGAKLKV 316
Query: 317 -GYQV-----CDEGSRYVNWDGTHHTEAANTFIASKILSTDYSTPRTPFEFFCHR 365
G ++ C++ S VNWDG H TEAAN ++ +I+ +S P P CH+
Sbjct: 315 HGQEILLGKPCEDPSLSVNWDGVHFTEAANKWVFDQIVDGSFSDPPIPLNMACHK 151
>TC10972 similar to UP|Q40318 (Q40318) Coil protein, partial (32%)
Length = 548
Score = 88.6 bits (218), Expect = 2e-18
Identities = 55/135 (40%), Positives = 82/135 (60%), Gaps = 3/135 (2%)
Frame = +1
Query: 7 FSLHLLFLFLWITSSSAAVMMS-KCDVPAVLFVFGDSNSDTGGLTSGLGFPINLPNGRTF 65
F+L + F+ I S + + S KC PAV + FGDSNS+TG + + + P G +F
Sbjct: 136 FALCVACTFIQIPSGNGSYSSSSKCSYPAV-YNFGDSNSNTGVVYAAFA-GLQSPGGISF 309
Query: 66 FHRSTGRLSDGRLVIDLLCQSLNTRFLTPYLDSLSGSSFTNGANFAVVGSSTLPKY--VP 123
F +GR SDGRL+ID + + L +L+ YL+S+ GS++ +GANFA G+S P Y P
Sbjct: 310 FGNLSGRASDGRLIIDFITEELEIPYLSAYLNSI-GSNYRHGANFAAGGASIRPVYGFSP 486
Query: 124 FSLNIQVMQFLHFKA 138
F L +QV QF+ ++
Sbjct: 487 FYLGMQVAQFIQLQS 531
>TC13503 similar to UP|Q8W0Y7 (Q8W0Y7) Enod8.3 (Fragment), partial (30%)
Length = 705
Score = 84.7 bits (208), Expect = 2e-17
Identities = 43/102 (42%), Positives = 60/102 (58%)
Frame = -2
Query: 191 VITEIENAVKSLYNEGARKFWVHNTGPLGCLPKILALAQKKDLDLFGCLSSYNSAARLFN 250
V+ E +K +Y+ AR F +HNT P+GCLP IL K + D +GC + YN A+ FN
Sbjct: 416 VLNE*NMVIKLIYDLRARSFGIHNT*PIGCLPAILTNFPKAERDHYGCAT*YNEVAKYFN 237
Query: 251 EALYHSSQKLRTRLKDATLVYVDIYAIKHDLIANATKYGFSN 292
+ L + +LR L A ++YVDIY+ K D N KYG +N
Sbjct: 236 QKLKEALAQLRRELPLAAIIYVDIYSPKLDHFRNLEKYGETN 111
>AV765573
Length = 440
Score = 84.0 bits (206), Expect = 4e-17
Identities = 50/121 (41%), Positives = 72/121 (59%), Gaps = 8/121 (6%)
Frame = +2
Query: 24 AVMMSKCDVPAVLFVFGDSNSDTGGLTSGLGFPINLPNGRTFFHRSTGRLSDGRLVIDLL 83
A CD PA+ F FG SNSDTGG + P P G T+F R GR SDGR+++D +
Sbjct: 83 ATTTKTCDFPAI-FNFGASNSDTGGFAAAFLQP-GPPQGDTYFGRPAGRFSDGRIILDFI 256
Query: 84 CQSLNTRFLTPYLDSLSGSSFTNGANFAVVGSS-TLPKYV-------PFSLNIQVMQFLH 135
Q+ +L+ YL+SL G+++++GA+FA + S+ LP+ V PF L +Q +QF
Sbjct: 257 AQNFELPYLSAYLNSL-GANYSHGASFATLSSTIRLPESVVPNGRSSPFFLGLQYLQFQQ 433
Query: 136 F 136
F
Sbjct: 434 F 436
>BP059660
Length = 501
Score = 82.4 bits (202), Expect = 1e-16
Identities = 42/112 (37%), Positives = 59/112 (52%), Gaps = 7/112 (6%)
Frame = -3
Query: 259 KLRTRLKDATLVYVDIYAIKHDLIANATKYGFSNPLTVCCGFGGPPYNFDLRVTCGQPGY 318
+LR L A YVD+Y K++LI+NA+K GF NPL VCCG + R+ CG+
Sbjct: 496 QLRRNLPKAKFTYVDVYTAKYELISNASKQGFVNPLEVCCG-----SYYGYRIDCGKKAV 332
Query: 319 -------QVCDEGSRYVNWDGTHHTEAANTFIASKILSTDYSTPRTPFEFFC 363
C S++++WDG H+T+AAN ++A I S P P C
Sbjct: 331 VNGTVYGNPCKNPSQHISWDGVHYTQAANKWVAKHIRDGSLSDPPVPIGQAC 176
>BP058564
Length = 468
Score = 80.5 bits (197), Expect = 4e-16
Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 1/127 (0%)
Frame = -2
Query: 238 CLSSYNSAARLFNEALYHSSQKLRTRLKDATLVYVDIYAIKHDLIANATKYGFS-NPLTV 296
CL N ++ L +LR ++Y D + + + +GF N L V
Sbjct: 467 CLKWLNMFHEHHDDLLQIELNQLRVLYPLTNIIYADFFNAALQIYKSPENFGFGGNALKV 288
Query: 297 CCGFGGPPYNFDLRVTCGQPGYQVCDEGSRYVNWDGTHHTEAANTFIASKILSTDYSTPR 356
CCG GG PYN++ CG G CD+ S+YV+WDG H TEAA +I +L Y+TP+
Sbjct: 287 CCG-GGGPYNYNDTAVCGNSGVIACDDPSQYVSWDGYHLTEAAYRWITKGLLDGSYTTPK 111
Query: 357 TPFEFFC 363
F C
Sbjct: 110 --FNLLC 96
>TC12415 similar to UP|Q9LII9 (Q9LII9) Genomic DNA, chromosome 3, TAC
clone:K24A2, partial (22%)
Length = 366
Score = 80.5 bits (197), Expect = 4e-16
Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Frame = +3
Query: 12 LFLFLWITSSSAAVMMSKCDVPAVLFVFGDSNSDTGGLTSGLGFPINLPNGRTFFHRSTG 71
LFL I +A V ++ +F FGDSNSDTG +++ ++ PNG+ F +G
Sbjct: 15 LFLPFTIVIVAAGVSFTEGSQYPAIFNFGDSNSDTGAISAAFTI-VHPPNGQNFLGALSG 191
Query: 72 RLSDGRLVIDLLCQSLNTRFLTPYLDSLSGSSFTNGANFAVVGSSTLP-KYVPFSLNIQ 129
R SDGRL+ID + + L +L YL+S+ G+++ +GANFA GSS L Y PF L Q
Sbjct: 192 RYSDGRLIIDFITEELKLPYLDAYLNSV-GANYRHGANFATGGSSILKGGYSPFHLAYQ 365
>BI419094
Length = 585
Score = 79.3 bits (194), Expect = 9e-16
Identities = 46/137 (33%), Positives = 66/137 (47%)
Frame = +3
Query: 217 PLGCLPKILALAQKKDLDLFGCLSSYNSAARLFNEALYHSSQKLRTRLKDATLVYVDIYA 276
P+GCLP + L D C++ N+ A FN L +SQ L+ L LV +DIY
Sbjct: 15 PVGCLPAAITLFGH---DSNQCVARLNNDAVNFNRKLNTTSQSLQKSLPGLKLVLLDIYQ 185
Query: 277 IKHDLIANATKYGFSNPLTVCCGFGGPPYNFDLRVTCGQPGYQVCDEGSRYVNWDGTHHT 336
+DL+ ++ GF+ CCG G + + C Q C S YV WDG H +
Sbjct: 186 PLYDLVTKPSENGFAEARRACCGTG----LLETSILCNQKSIGTCANASEYVFWDGFHPS 353
Query: 337 EAANTFIASKILSTDYS 353
EAAN +A +++ S
Sbjct: 354 EAANQVLAGDLIAAGIS 404
>BG662032
Length = 421
Score = 76.3 bits (186), Expect = 8e-15
Identities = 46/133 (34%), Positives = 64/133 (47%)
Frame = +1
Query: 202 LYNEGARKFWVHNTGPLGCLPKILALAQKKDLDLFGCLSSYNSAARLFNEALYHSSQKLR 261
LY ARKF + N GP+GC+P + Q + + C+ N A +N L +L
Sbjct: 40 LYRLDARKFVIGNVGPIGCIPYQKTINQLNENE---CVDLPNKLALQYNARLKDLMAELN 210
Query: 262 TRLKDATLVYVDIYAIKHDLIANATKYGFSNPLTVCCGFGGPPYNFDLRVTCGQPGYQVC 321
L AT V ++Y + +LI N KYGF+ CCG GG F V CG P +C
Sbjct: 211 DNLPGATFVVANVYDLVMELIKNYDKYGFTTSTKACCGNGG---QFAGIVPCG-PTSSIC 378
Query: 322 DEGSRYVNWDGTH 334
+ ++V WD H
Sbjct: 379 TDRYKHVFWDPYH 417
>TC14231
Length = 803
Score = 75.9 bits (185), Expect = 1e-14
Identities = 49/159 (30%), Positives = 72/159 (44%), Gaps = 2/159 (1%)
Frame = +2
Query: 199 VKSLYNEGARKFWVHNTGPLGCLPKILALAQKKDLDLFGCLSSYNSAARLFNEALYHSSQ 258
++ +Y+ GAR+ V TGP+GC+P LA+ + C AA L+N L + +
Sbjct: 14 LRKMYDLGARRVLVTGTGPMGCVPPXLAMRSRTG----DCDVELXRAASLYNPQLVNMIK 181
Query: 259 KLRTRLKDATLVYVDIYAIKHDLIANATKYGFSNPLTVCCGFGGPPYNFDLRVTCGQPGY 318
L L + + Y + D I+N YGF CCG G PYN + P
Sbjct: 182 GLNQELGADVFIAANAYQMHMDFISNPRAYGFVTSKIACCGQG--PYN---GIGLCTPAS 346
Query: 319 QVCDEGSRYVNWDGTHHTEAANTFIASKIL--STDYSTP 355
+C Y WD H +E A+ I +IL +T+Y P
Sbjct: 347 NLCPNRDIYAFWDPFHPSERASRIIVQQILRGTTEYMHP 463
>CB827193
Length = 528
Score = 74.3 bits (181), Expect = 3e-14
Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 13/115 (11%)
Frame = +1
Query: 17 WITSSSAAVMMS----KCDVPAVLFVFGDSNSDTGGLTSGLGFPINL----PNGRTFFHR 68
W+ ++A V+++ C ++ F FGDS +DTG L P + P GRT+FHR
Sbjct: 16 WLVVAAALVVLTGSATACSFSSI-FSFGDSLADTGNLYLSSALPSHHCFFPPYGRTYFHR 192
Query: 69 STGRLSDGRLVIDLLCQSLNTRFLTPYLD-----SLSGSSFTNGANFAVVGSSTL 118
+ R SDGR++ID + +SL F+ PYL+ L + GANFAV+G++ L
Sbjct: 193 PSARCSDGRIIIDYIAESLGLPFVKPYLEIKKHGGLENFNVEGGANFAVIGATAL 357
>AV766515
Length = 572
Score = 69.7 bits (169), Expect = 7e-13
Identities = 38/118 (32%), Positives = 57/118 (48%)
Frame = -3
Query: 243 NSAARLFNEALYHSSQKLRTRLKDATLVYVDIYAIKHDLIANATKYGFSNPLTVCCGFGG 302
N A ++FN L + +L DA ++Y++ Y I D+IA+ YGFSN CCG G
Sbjct: 567 NDATQIFNNKLKSVVDQFNNQLPDARVIYINAYGIFQDIIASPATYGFSNTNEGCCGVG- 391
Query: 303 PPYNFDLRVTCGQPGYQVCDEGSRYVNWDGTHHTEAANTFIASKILSTDYSTPRTPFE 360
+ ++TC P C+ Y+ WD H +EA N IA + S + P +
Sbjct: 390 ---RNNGQITC-LPMQTPCENRREYLFWDAFHPSEAGNVVIAQRAYSAQSPSDAYPID 229
>TC9321 similar to UP|O04320 (O04320) Proline-rich protein APG isolog,
partial (37%)
Length = 541
Score = 67.4 bits (163), Expect = 4e-12
Identities = 33/112 (29%), Positives = 56/112 (49%)
Frame = +2
Query: 237 GCLSSYNSAARLFNEALYHSSQKLRTRLKDATLVYVDIYAIKHDLIANATKYGFSNPLTV 296
GC+S +N+ A+ FN+ + ++ KL+ + +V DIY +DL+ + +GF+
Sbjct: 8 GCVSRFNTDAQAFNKKINSAAAKLQKQHPGLKIVIFDIYKPLYDLVQTPSNFGFAEARRG 187
Query: 297 CCGFGGPPYNFDLRVTCGQPGYQVCDEGSRYVNWDGTHHTEAANTFIASKIL 348
CCG G + C C ++YV WD H +EAAN +A ++
Sbjct: 188 CCGTGTVE---TTSLLCNPKSIGTCSNATQYVFWDSVHPSEAANQVLADALI 334
>TC10139 similar to UP|Q9SVU5 (Q9SVU5) Proline-rich APG-like protein,
partial (40%)
Length = 595
Score = 66.2 bits (160), Expect = 8e-12
Identities = 43/143 (30%), Positives = 59/143 (41%), Gaps = 2/143 (1%)
Frame = +2
Query: 215 TGPLGCLPKILALAQKKDLDLFGCLSSYNSAARLFNEALYHSSQKLRTRLKDATLVYVDI 274
TGPLGC+P LAL + C A LFN L +L T + + +
Sbjct: 5 TGPLGCVPAELALHSRNG----ECAVELQRAVNLFNPQLVQLINQLNTEIGSHVFISANA 172
Query: 275 YAIKHDLIANATKYGFSNPLTVCCGFGGPPYNFDLRVTCGQPGYQVCDEGSRYVNWDGTH 334
+A+ D + + YGF CCG G YN + P +C + WD H
Sbjct: 173 FAMHLDFVNDPQAYGFVTSKVACCGQGA--YN---GIGLCTPASNLCPNRDLFAFWDPFH 337
Query: 335 HTEAANTFIASKIL--STDYSTP 355
+E AN I K + ST+Y P
Sbjct: 338 PSERANRLIVDKFMTGSTEYMNP 406
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.323 0.138 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,404,224
Number of Sequences: 28460
Number of extensions: 84064
Number of successful extensions: 524
Number of sequences better than 10.0: 101
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of query: 365
length of database: 4,897,600
effective HSP length: 91
effective length of query: 274
effective length of database: 2,307,740
effective search space: 632320760
effective search space used: 632320760
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0223.2