TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0223.17
         (88 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC7998 homologue to UP|HEM6_SOYBN (P35055) Coproporphyrinogen II...    24  4.1
TC8884 similar to UP|O22600 (O22600) Glycine-rich protein, parti...    24  4.1
CB829291                                                               24  5.4
TC7843 weakly similar to GB|AAF03412.1|6090963|AF188712 mitochon...    23  7.0
TC12653 similar to UP|BIOB_ARATH (P54967) Biotin synthase  (Biot...    23  9.1
AV779849                                                               23  9.1
BP068645                                                               23  9.1

>TC7998 homologue to UP|HEM6_SOYBN (P35055) Coproporphyrinogen III oxidase,
           chloroplast precursor  (Coproporphyrinogenase) (Coprogen
           oxidase) , partial (88%)
          Length = 1573

 Score = 24.3 bits (51), Expect = 4.1
 Identities = 14/43 (32%), Positives = 19/43 (43%), Gaps = 5/43 (11%)
 Frame = +2

Query: 22  EREGYNGNFVYDQVDND-----IITAEVSNGPIPSFATFLERR 59
           ER G  G F  D  D D         E +N  +PS+   +E+R
Sbjct: 887 ERRGLGGIFFDDLNDYDQEMLLSFATECANSVVPSYIPIIEKR 1015


>TC8884 similar to UP|O22600 (O22600) Glycine-rich protein, partial (46%)
          Length = 888

 Score = 24.3 bits (51), Expect = 4.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 58  RRGHMSQREIHRQLQADLVEHIWELSESRNN 88
           R  H+ + +IH  L+  L +     S+SRNN
Sbjct: 559 RSRHLVRYQIHHLLRPQLFQKAVHCSQSRNN 467


>CB829291 
          Length = 565

 Score = 23.9 bits (50), Expect = 5.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 35  VDNDIITAEVSNGPIPSFAT 54
           + NDI  AEV+   +PSFA+
Sbjct: 94  LQNDIFHAEVTTPNVPSFAS 153


>TC7843 weakly similar to GB|AAF03412.1|6090963|AF188712 mitochondrial
           dicarboxylate carrier {Mus musculus;} , partial (22%)
          Length = 1594

 Score = 23.5 bits (49), Expect = 7.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 50  PSFATFLERRGHMSQREIHRQ 70
           P+FA +  RRG   +R  HR+
Sbjct: 729 PAFAPWRRRRGCQQRRRFHRR 667


>TC12653 similar to UP|BIOB_ARATH (P54967) Biotin synthase  (Biotin
           synthetase) , partial (29%)
          Length = 535

 Score = 23.1 bits (48), Expect = 9.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 78  HIWELSESRNN 88
           HIW + +SRNN
Sbjct: 448 HIWRIEDSRNN 416


>AV779849 
          Length = 465

 Score = 23.1 bits (48), Expect = 9.1
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 4   CMQILYACIILHNM 17
           CMQILY  ++LH++
Sbjct: 131 CMQILY*LLLLHSL 90


>BP068645 
          Length = 438

 Score = 23.1 bits (48), Expect = 9.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 78  HIWELSESRNN 88
           HIW + +SRNN
Sbjct: 353 HIWRIEDSRNN 321


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.327    0.141    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,432,191
Number of Sequences: 28460
Number of extensions: 14312
Number of successful extensions: 103
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of query: 88
length of database: 4,897,600
effective HSP length: 64
effective length of query: 24
effective length of database: 3,076,160
effective search space: 73827840
effective search space used: 73827840
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)