BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0221.11
(142 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC10970 similar to GB|AAA32722.1|166570|ATH18RAB glycine rich pr... 38 8e-04
TC14184 similar to UP|Q93WZ6 (Q93WZ6) Abscisic stress ripening-l... 32 0.032
TC7974 similar to GB|AAA77675.1|607870|DSU11801 period protein {... 31 0.094
TC9347 29 0.27
TC8811 similar to UP|AAP04330 (AAP04330) G-protein-coupled recep... 28 0.61
AV773560 28 0.61
BP073178 28 0.79
TC10778 28 0.79
TC14947 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {Ar... 27 1.4
TC8884 similar to UP|O22600 (O22600) Glycine-rich protein, parti... 27 1.4
TC16065 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich... 26 2.3
AV406952 26 2.3
TC18973 similar to UP|Q9LEB4 (Q9LEB4) RNA binding protein 45, pa... 26 2.3
TC19078 similar to UP|Q85FM6 (Q85FM6) Photosystem II protein M (... 26 3.0
CB829244 26 3.0
TC18227 similar to GB|BAC42746.1|26451290|AK118120 protein trans... 26 3.0
TC13004 similar to UP|Q9LW14 (Q9LW14) Lysophospholipase-like pro... 25 3.9
BP061917 25 3.9
TC8209 homologue to PIR|T10586|T10586 small nuclear ribonucleopr... 25 5.2
CB827825 25 5.2
>TC10970 similar to GB|AAA32722.1|166570|ATH18RAB glycine rich protein
{Arabidopsis thaliana;} , partial (25%)
Length = 697
Score = 37.7 bits (86), Expect = 8e-04
Identities = 28/58 (48%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +2
Query: 87 GTGTGTGTAA----YSTTGAHGQPMGAHQTSALPGHGTGHNTRVGGNPNATGYGTGGT 140
GTGTG GT Y TTG HG H T+ G GTG+ T GG + T YGT GT
Sbjct: 5 GTGTGYGTGGHGTDYGTTGTHG-----HGTT---GTGTGYGT--GG--HGTEYGTTGT 142
>TC14184 similar to UP|Q93WZ6 (Q93WZ6) Abscisic stress ripening-like
protein, partial (57%)
Length = 1141
Score = 32.3 bits (72), Expect = 0.032
Identities = 26/84 (30%), Positives = 39/84 (45%), Gaps = 9/84 (10%)
Frame = +3
Query: 65 DKLAAREHNAATKQSAAAAAHMGTGTGTG-TAAYST----TGAHGQPMG----AHQTSAL 115
D+ + ++++ K+S+ + G TG T++YST +G G G A+ T
Sbjct: 183 DEPSGGDYDSGYKKSSYETSGGGYETGYNKTSSYSTDEPNSGGGGYDSGYNKTAYSTDEP 362
Query: 116 PGHGTGHNTRVGGNPNATGYGTGG 139
G G G GG GYGTGG
Sbjct: 363 SGGGYGTGGAGGGYSTGGGYGTGG 434
Score = 30.4 bits (67), Expect = 0.12
Identities = 17/45 (37%), Positives = 21/45 (45%)
Frame = +3
Query: 87 GTGTGTGTAAYSTTGAHGQPMGAHQTSALPGHGTGHNTRVGGNPN 131
G GTG YST G +G G + G G G++T GG N
Sbjct: 372 GYGTGGAGGGYSTGGGYGTGGGGGGEYSTGGGGGGYSTGGGGYGN 506
>TC7974 similar to GB|AAA77675.1|607870|DSU11801 period protein {Drosophila
simulans;} , partial (46%)
Length = 689
Score = 30.8 bits (68), Expect = 0.094
Identities = 22/59 (37%), Positives = 23/59 (38%)
Frame = +3
Query: 76 TKQSAAAAAHMGTGTGTGTAAYSTTGAHGQPMGAHQTSALPGHGTGHNTRVGGNPNATG 134
T S GTGTG GT STTG G GTG T G+PN G
Sbjct: 30 TGTSTGTGTSTGTGTGIGTGTGSTTGT--------------GIGTGTGTTT-GSPNVFG 161
>TC9347
Length = 546
Score = 29.3 bits (64), Expect = 0.27
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 93 GTAAYSTTGAHGQPMGAHQTSALPGHGTGHNTRVGGNPNATGYG 136
GT + S T +HG +G+ + H TG N + NPN G
Sbjct: 202 GTFSGSFTTSHGVVVGSKHGRRIRSHSTGLNRKRNRNPNPRTIG 71
>TC8811 similar to UP|AAP04330 (AAP04330) G-protein-coupled receptor GPR34
type 2a (Fragment), partial (6%)
Length = 675
Score = 28.1 bits (61), Expect = 0.61
Identities = 17/35 (48%), Positives = 21/35 (59%)
Frame = +3
Query: 87 GTGTGTGTAAYSTTGAHGQPMGAHQTSALPGHGTG 121
GTGTGTGT + +TTG+ P + L G GTG
Sbjct: 60 GTGTGTGTPSSTTTGS-TTPFSS-TPGVLGGIGTG 158
>AV773560
Length = 438
Score = 28.1 bits (61), Expect = 0.61
Identities = 16/43 (37%), Positives = 17/43 (39%)
Frame = +3
Query: 97 YSTTGAHGQPMGAHQTSALPGHGTGHNTRVGGNPNATGYGTGG 139
Y G G P G + P G G R GG P G G GG
Sbjct: 282 Y*ELGGGGMPGGGGA*TGAPAGGGGIPGRGGGGPGIPGRGGGG 410
>BP073178
Length = 389
Score = 27.7 bits (60), Expect = 0.79
Identities = 19/57 (33%), Positives = 28/57 (48%)
Frame = -2
Query: 77 KQSAAAAAHMGTGTGTGTAAYSTTGAHGQPMGAHQTSALPGHGTGHNTRVGGNPNAT 133
K+SA AA +G G G Y+ + P+ + G GTG T VGG+ +A+
Sbjct: 361 KRSAVTAAGSSSGGGGG---YNDSC----PVSVANSGGAAGGGTGDTTPVGGDSSAS 212
>TC10778
Length = 524
Score = 27.7 bits (60), Expect = 0.79
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 100 TGAHGQPMGAHQTSALPGHGTGHNTRVGGN 129
T G P+G H TS LPG+ T + + + G+
Sbjct: 365 TKIQGYPIG*HVTSDLPGYATSNES*MNGD 276
>TC14947 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {Arabidopsis
thaliana;}, partial (26%)
Length = 728
Score = 26.9 bits (58), Expect = 1.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 92 TGTAAYSTTGAHGQPMGAHQTSALP 116
TG +S +H QP+GA+ T LP
Sbjct: 420 TGERVFSHHDSHAQPLGANPTRELP 346
>TC8884 similar to UP|O22600 (O22600) Glycine-rich protein, partial (46%)
Length = 888
Score = 26.9 bits (58), Expect = 1.4
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = +1
Query: 93 GTAAYSTTGAHGQPMGAHQTSALPGHGTGHNTRVGGNPNATGYGTGGT 140
G YS G++G P G G G G GG N G G GGT
Sbjct: 457 GVGGYSGIGSNGLPFGT------VGAGVG-----GGFDNGLGGGIGGT 567
>TC16065 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich
glycoprotein DZ-HRGP precursor, partial (20%)
Length = 608
Score = 26.2 bits (56), Expect = 2.3
Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Frame = -1
Query: 71 EHNAATKQSA-----AAAAHMGTGTGTGTAAYSTTGAHGQPMGAHQTSALPGHGTGHNTR 125
+H+ +T++SA AAAA G G G P G P G G
Sbjct: 431 QHSHSTERSAPPPQQAAAAPGGGGPG--------------PQGGRGYGGPPQGGRGGGYG 294
Query: 126 VGGNPNATGYGTGG 139
GG P G G GG
Sbjct: 293 GGGGPGYGGGGRGG 252
>AV406952
Length = 441
Score = 26.2 bits (56), Expect = 2.3
Identities = 18/54 (33%), Positives = 21/54 (38%)
Frame = -2
Query: 86 MGTGTGTGTAAYSTTGAHGQPMGAHQTSALPGHGTGHNTRVGGNPNATGYGTGG 139
+G GT G TTG G G +AL G G G G+ TGG
Sbjct: 263 VGEGTDAGNFDGDTTGKFGWTNGLFTGNALIGDVAGAGNMDGVVIGKIGWVTGG 102
>TC18973 similar to UP|Q9LEB4 (Q9LEB4) RNA binding protein 45, partial (22%)
Length = 416
Score = 26.2 bits (56), Expect = 2.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 71 EHNAATKQSAAAAAHMGTGTGTGTAAYSTTGAH 103
EH A+ ++A+A+ G+G+G + + S T H
Sbjct: 12 EHGFASSSTSASASASGSGSGISSTSSSPTFLH 110
>TC19078 similar to UP|Q85FM6 (Q85FM6) Photosystem II protein M (Fragment),
partial (37%)
Length = 603
Score = 25.8 bits (55), Expect = 3.0
Identities = 14/37 (37%), Positives = 18/37 (47%)
Frame = -3
Query: 85 HMGTGTGTGTAAYSTTGAHGQPMGAHQTSALPGHGTG 121
H+G TGT + GAH +P+G S G TG
Sbjct: 133 HLGA---TGTNGHRRLGAHERPLGDRCQSRAKGGHTG 32
>CB829244
Length = 478
Score = 25.8 bits (55), Expect = 3.0
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -2
Query: 34 QEKAEKVTAGDPVQKEMATQKKEAKVSQAELDKLAAREHNAATKQSAAAAAHMGTGTGT 92
+E+ ++ D +E TQ+ E V E+D+ E+ AAAA T TGT
Sbjct: 231 EERGKEAEEEDEGVEENETQRLEEFVFPNEIDEGVVVENEKLEGHGGAAAAVTVTVTGT 55
>TC18227 similar to GB|BAC42746.1|26451290|AK118120 protein transport
protein subunit - like {Arabidopsis thaliana;}, partial
(58%)
Length = 306
Score = 25.8 bits (55), Expect = 3.0
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Frame = +1
Query: 75 ATKQSAAAAAHM-----GTGTGTGTAAYSTTGAHGQPMGAHQTSALPG 117
A + SAAA A M GTG+G +A+ + G M T PG
Sbjct: 109 APRGSAAATAGMRRRRLGTGSGNSSASVGASSGGGSNMLRFYTDDAPG 252
>TC13004 similar to UP|Q9LW14 (Q9LW14) Lysophospholipase-like protein,
partial (65%)
Length = 538
Score = 25.4 bits (54), Expect = 3.9
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +2
Query: 79 SAAAAAHMGTGTGTGTAAYSTTGAHG---QPMGAHQTSALPGHGTGHN 123
S + AH TG+G+ TA + +P G HQ + + HG G N
Sbjct: 17 SKMSYAHYQTGSGSRTARRTLEFGKTHVVRPKGKHQATIVWLHGLGDN 160
>BP061917
Length = 312
Score = 25.4 bits (54), Expect = 3.9
Identities = 12/37 (32%), Positives = 20/37 (53%)
Frame = +2
Query: 76 TKQSAAAAAHMGTGTGTGTAAYSTTGAHGQPMGAHQT 112
TKQ+A + AH + + S++ +H +GAH T
Sbjct: 182 TKQTAPSQAHWPWASSXSSNXSSSSASHIPFIGAHHT 292
>TC8209 homologue to PIR|T10586|T10586 small nuclear
ribonucleoprotein-associated protein homolog
F9F13.90 - Arabidopsis thaliana {Arabidopsis
thaliana;}, partial (19%)
Length = 635
Score = 25.0 bits (53), Expect = 5.2
Identities = 18/40 (45%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -2
Query: 101 GAHGQP-MGAHQTSALPGHGTGHNTRVGGNPNATGYGTGG 139
G G P G T A PG G G R GG P G G GG
Sbjct: 214 GGGGMPGRGGA*TGAPPGGG-GIPGRGGGGPGIPGRGGGG 98
>CB827825
Length = 398
Score = 25.0 bits (53), Expect = 5.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 119 GTGHNTRVGGNPNATGYGTGG 139
G+G+ GG + +GYG GG
Sbjct: 55 GSGYGYGTGGGASGSGYGFGG 117
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.301 0.116 0.312
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,577,066
Number of Sequences: 28460
Number of extensions: 17701
Number of successful extensions: 111
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of query: 142
length of database: 4,897,600
effective HSP length: 81
effective length of query: 61
effective length of database: 2,592,340
effective search space: 158132740
effective search space used: 158132740
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0221.11