TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0218.17
         (581 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11335                                                               243  8e-65
AV770592                                                              143  7e-35
TC15537                                                                44  9e-05
BP058305                                                               37  0.012
TC8984 similar to UP|Q8LBA3 (Q8LBA3) Phosphoserine aminotransfer...    29  1.8
TC18796                                                                27  7.0
TC12004 similar to UP|Q8VWP9 (Q8VWP9) Fiddlehead-like protein, p...    27  7.0
BF177660                                                               27  9.1
BP033980                                                               27  9.1
AV412589                                                               27  9.1

>TC11335 
          Length = 447

 Score =  243 bits (619), Expect = 8e-65
 Identities = 116/117 (99%), Positives = 116/117 (99%)
 Frame = +2

Query: 465 HQEDYFDWILREGYAHPAVQGIIMFMGPVQAGFKKAPLADENFKNTPIGDVVDMLIREWG 524
           HQEDY DWILREGYAHPAVQGIIMFMGPVQAGFKKAPLADENFKNTPIGDVVDMLIREWG
Sbjct: 2   HQEDYVDWILREGYAHPAVQGIIMFMGPVQAGFKKAPLADENFKNTPIGDVVDMLIREWG 181

Query: 525 TGPHEAKADSRGIVDISLHHGDYDVIVTHPQKQISKTLNLSVRKGSPQQTIQVKMHA 581
           TGPHEAKADSRGIVDISLHHGDYDVIVTHPQKQISKTLNLSVRKGSPQQTIQVKMHA
Sbjct: 182 TGPHEAKADSRGIVDISLHHGDYDVIVTHPQKQISKTLNLSVRKGSPQQTIQVKMHA 352


>AV770592 
          Length = 489

 Score =  143 bits (361), Expect = 7e-35
 Identities = 74/160 (46%), Positives = 96/160 (59%)
 Frame = +2

Query: 122 SDTVSVVFKINGRELIRGGHVIAKHGCWTLMKGGLVANFTSPAEILFESKNPTVEIWADS 181
           S + S+V    G +L   G  +A+      ++     N +  AE+ FES+N +VEIW DS
Sbjct: 5   SSSKSIVKTTEGLKL--AGATLAESNVGLCLRVVSQTNTSGTAELYFESENTSVEIWIDS 178

Query: 182 VSLQPFTKEQWRSHQEESIERVRKSKVRFQVTHINETALEGATITTKQTKLDFPFGCGIN 241
           +SLQPFT++QW SHQ +S E+ RKSKV  Q        L  A+I   Q +L FPFG  IN
Sbjct: 179 ISLQPFTQKQWSSHQHQSTEKARKSKVLVQAIDEQGNPLPNASIHITQKRLGFPFGSAIN 358

Query: 242 NNILTNSEYQKWFLSRFKYTTFTNQMKWYSTEIVKGQENY 281
           +NIL N  YQ WF SRF  TTF N+MKWY TE  +G+ NY
Sbjct: 359 HNILNNGAYQNWFTSRFTVTTFENEMKWYMTETTQGKPNY 478


>TC15537 
          Length = 589

 Score = 43.5 bits (101), Expect = 9e-05
 Identities = 35/104 (33%), Positives = 51/104 (48%), Gaps = 7/104 (6%)
 Frame = +1

Query: 468 DYFDWILREGYAHPAVQGIIMFMGPVQAGFKKAPLA-DENFKNTPIGDVVDM------LI 520
           D  + +LRE  AHPAV+GI+++      GF +  ++ D +      GD+ +       L 
Sbjct: 46  DDLEVMLREAMAHPAVEGIMLW------GFWELFMSRDHSHLVNAEGDINEAGKRFLDLK 207

Query: 521 REWGTGPHEAKADSRGIVDISLHHGDYDVIVTHPQKQISKTLNL 564
           REW +  H+   D  G       HG Y+V V  P K+ISKT  L
Sbjct: 208 REWLSHKHD-HVDEHGQFSFRGFHGTYNVEVVTPTKKISKTFVL 336


>BP058305 
          Length = 303

 Score = 36.6 bits (83), Expect = 0.012
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
 Frame = -3

Query: 519 LIREWGTGPH-EAKADSRGIVDISLHHGDYDVIVTHP-QKQISKTLNLSV----RKGSPQ 572
           L+ EW          D  G +++SL HGDY+V ++HP +K  + T ++ V      G   
Sbjct: 301 LLHEWXXSKTLSGTTDQNGNLEVSLFHGDYEVEISHPAKKNYTLTHHVQVVPNDESGKSS 122

Query: 573 QTIQVKM 579
           Q +Q+ M
Sbjct: 121 QFVQLSM 101


>TC8984 similar to UP|Q8LBA3 (Q8LBA3) Phosphoserine aminotransferase,
           partial (25%)
          Length = 563

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 445 LLGATGFPIWLTETSIDPQPHQEDYFDWILREGYA 479
           ++    FP+WL   ++ P P Q    DW LR  ++
Sbjct: 382 IMERNSFPLWLISMTLMPDPRQL*SSDWALRRTFS 278


>TC18796 
          Length = 398

 Score = 27.3 bits (59), Expect = 7.0
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 9   SLLFTTSFLILISGLTVHSLSH 30
           SL+FT + LI ISG  +H+ SH
Sbjct: 189 SLIFTLAALIAISGTRIHAPSH 254


>TC12004 similar to UP|Q8VWP9 (Q8VWP9) Fiddlehead-like protein, partial
           (18%)
          Length = 567

 Score = 27.3 bits (59), Expect = 7.0
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -3

Query: 541 SLHHGDYDVIVTHPQKQISK 560
           S++HGD+D++  HP K+ +K
Sbjct: 559 SINHGDFDIMNYHPIKETNK 500


>BF177660 
          Length = 289

 Score = 26.9 bits (58), Expect = 9.1
 Identities = 14/37 (37%), Positives = 21/37 (55%)
 Frame = +1

Query: 138 RGGHVIAKHGCWTLMKGGLVANFTSPAEILFESKNPT 174
           +G H+IA   C+  M  G+VA  ++ + ILF    PT
Sbjct: 148 QGMHIIASLTCYWQMLVGIVAFASAQSAILFSR*KPT 258


>BP033980 
          Length = 615

 Score = 26.9 bits (58), Expect = 9.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 447 GATGFPIWLTETSIDPQPHQED 468
           G+ GFP+W T  +  PQP  ED
Sbjct: 346 GSPGFPVWHTRAAA-PQPRAED 408


>AV412589 
          Length = 339

 Score = 26.9 bits (58), Expect = 9.1
 Identities = 15/37 (40%), Positives = 19/37 (50%)
 Frame = -2

Query: 49  YGGGIIVNPGFDHNLEGWTVFGNGAIEERRSNEGNAF 85
           +GGG+ V PGF   +E     GNG+   RR   G  F
Sbjct: 221 FGGGVEVGPGFVEEVEEVADDGNGSGLLRRRCGGVGF 111


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,381,158
Number of Sequences: 28460
Number of extensions: 139340
Number of successful extensions: 605
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of query: 581
length of database: 4,897,600
effective HSP length: 95
effective length of query: 486
effective length of database: 2,193,900
effective search space: 1066235400
effective search space used: 1066235400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)