TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0218.16
         (560 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11335                                                               207  5e-54
AV770592                                                              139  9e-34
TC15537                                                                38  0.004
BP058305                                                               34  0.055
BP034176                                                               29  1.8
TC16133 similar to UP|Q39449 (Q39449) Specific tissue protein 1,...    29  2.3
TC8984 similar to UP|Q8LBA3 (Q8LBA3) Phosphoserine aminotransfer...    28  3.0
TC11925 similar to UP|Q9FKX6 (Q9FKX6) Prolyl 4-hydroxylase, alph...    28  5.1
AV426985                                                               27  8.7

>TC11335 
          Length = 447

 Score =  207 bits (526), Expect = 5e-54
 Identities = 98/117 (83%), Positives = 105/117 (88%)
 Frame = +2

Query: 444 NQEEYFEWILREGYSHPAVQGIIMFMGPVQAGFQKAPLADENFTNTPMGDVVDKLIREWG 503
           +QE+Y +WILREGY+HPAVQGIIMFMGPVQAGF+KAPLADENF NTP+GDVVD LIREWG
Sbjct: 2   HQEDYVDWILREGYAHPAVQGIIMFMGPVQAGFKKAPLADENFKNTPIGDVVDMLIREWG 181

Query: 504 TGPHETMADSRGIVDISLHHGDYDVIVSHPQTHFSKTLNLSVRKEFSQQTIHVKMHA 560
           TGPHE  ADSRGIVDISLHHGDYDVIV+HPQ   SKTLNLSVRK   QQTI VKMHA
Sbjct: 182 TGPHEAKADSRGIVDISLHHGDYDVIVTHPQKQISKTLNLSVRKGSPQQTIQVKMHA 352


>AV770592 
          Length = 489

 Score =  139 bits (351), Expect = 9e-34
 Identities = 73/160 (45%), Positives = 95/160 (58%)
 Frame = +2

Query: 101 SETVSVVFKIHGSELIRGGHVIAKHGCWTLLKGGLVANFTSPADILFESKNPTVEIWADS 160
           S + S+V    G +L   G  +A+      L+     N +  A++ FES+N +VEIW DS
Sbjct: 5   SSSKSIVKTTEGLKL--AGATLAESNVGLCLRVVSQTNTSGTAELYFESENTSVEIWIDS 178

Query: 161 VSLQPFTKEEWRSHQEDSIERVRKRKVRFQVTHINETALEGATISIKQTRPHFPFGCGMN 220
           +SLQPFT+++W SHQ  S E+ RK KV  Q        L  A+I I Q R  FPFG  +N
Sbjct: 179 ISLQPFTQKQWSSHQHQSTEKARKSKVLVQAIDEQGNPLPNASIHITQKRLGFPFGSAIN 358

Query: 221 NNILTNSAYRKWFMSRFKHTTFTNQMKWYSTEKVQGQENY 260
           +NIL N AY+ WF SRF  TTF N+MKWY TE  QG+ NY
Sbjct: 359 HNILNNGAYQNWFTSRFTVTTFENEMKWYMTETTQGKPNY 478


>TC15537 
          Length = 589

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 32/101 (31%), Positives = 48/101 (46%), Gaps = 7/101 (6%)
 Frame = +1

Query: 450 EWILREGYSHPAVQGIIMFMGPVQAGFQKAPLA-DENFTNTPMGDVVD------KLIREW 502
           E +LRE  +HPAV+GI+++      GF +  ++ D +      GD+ +       L REW
Sbjct: 55  EVMLREAMAHPAVEGIMLW------GFWELFMSRDHSHLVNAEGDINEAGKRFLDLKREW 216

Query: 503 GTGPHETMADSRGIVDISLHHGDYDVIVSHPQTHFSKTLNL 543
            +  H+ + D  G       HG Y+V V  P    SKT  L
Sbjct: 217 LSHKHDHV-DEHGQFSFRGFHGTYNVEVVTPTKKISKTFVL 336


>BP058305 
          Length = 303

 Score = 34.3 bits (77), Expect = 0.055
 Identities = 15/37 (40%), Positives = 22/37 (58%), Gaps = 1/37 (2%)
 Frame = -3

Query: 498 LIREWGTGPHET-MADSRGIVDISLHHGDYDVIVSHP 533
           L+ EW      +   D  G +++SL HGDY+V +SHP
Sbjct: 301 LLHEWXXSKTLSGTTDQNGNLEVSLFHGDYEVEISHP 191


>BP034176 
          Length = 604

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 16/52 (30%), Positives = 24/52 (45%)
 Frame = -1

Query: 293 WVKSLSPQDLREAARKRINSVVSRYKGDLIAWDVVNENLHYNFYEQNFGENA 344
           W K LSPQ ++   R   NSV S  +  LI  +    N   N + +   E++
Sbjct: 604 WAKRLSPQHVKHTPRSTNNSVDSSLEDALILTNTCPTNTSMNLHTEIITESS 449


>TC16133 similar to UP|Q39449 (Q39449) Specific tissue protein 1, partial
           (40%)
          Length = 934

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 12/68 (17%), Positives = 33/68 (47%)
 Frame = +3

Query: 432 IWLTETSIDPQPNQEEYFEWILREGYSHPAVQGIIMFMGPVQAGFQKAPLADENFTNTPM 491
           ++L   +++ + +Q EY++ I+++      +QG++     ++ G       DE    T  
Sbjct: 75  LFLIAATVESRKDQGEYWKMIMKDEEMPEGIQGLLQLKSEIKPGKNSEHKCDEEHVVTNN 254

Query: 492 GDVVDKLI 499
             +++K +
Sbjct: 255 EYIIEKKV 278


>TC8984 similar to UP|Q8LBA3 (Q8LBA3) Phosphoserine aminotransferase,
           partial (25%)
          Length = 563

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 424 ILGATGYPIWLTETSIDPQPNQEEYFEWILREGYS 458
           I+    +P+WL   ++ P P Q    +W LR  +S
Sbjct: 382 IMERNSFPLWLISMTLMPDPRQL*SSDWALRRTFS 278


>TC11925 similar to UP|Q9FKX6 (Q9FKX6) Prolyl 4-hydroxylase, alpha
           subunit-like protein, partial (43%)
          Length = 613

 Score = 27.7 bits (60), Expect = 5.1
 Identities = 17/64 (26%), Positives = 27/64 (41%), Gaps = 1/64 (1%)
 Frame = +1

Query: 306 ARKRINSVVSRYKG-DLIAWDVVNENLHYNFYEQNFGENASAMYYSTAYHLDPNARMFLN 364
           +R R +S     +G D I  ++      Y F     GE    ++Y      D +   F++
Sbjct: 421 SRARTSSGTFLARGRDKIVRNIEKRIADYTFIPIEHGEGLQVLHYEVGQKYDSHYDYFMD 600

Query: 365 EFNT 368
           EFNT
Sbjct: 601 EFNT 612


>AV426985 
          Length = 422

 Score = 26.9 bits (58), Expect = 8.7
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
 Frame = -2

Query: 431 PIWLTETSIDPQPNQEEYFE-----WILREGYSHPAV 462
           P W +E S DPQP   + +      W  R  + HP+V
Sbjct: 235 PAWHSEKSDDPQPVSHQKWSL*PAGWTYRRCHFHPSV 125


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,161,184
Number of Sequences: 28460
Number of extensions: 136777
Number of successful extensions: 597
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of query: 560
length of database: 4,897,600
effective HSP length: 95
effective length of query: 465
effective length of database: 2,193,900
effective search space: 1020163500
effective search space used: 1020163500
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)