TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0215b.7
         (68 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AU089205                                                              102  1e-23
TC12179 weakly similar to UP|Q40709 (Q40709) WSI18 protein induc...    42  2e-05
TC10095 weakly similar to UP|Q94FU1 (Q94FU1) Auxin-regulated dua...    28  0.26
BP077142                                                               25  2.2
TC10173 weakly similar to UP|Q9LJQ3 (Q9LJQ3) Lipid transfer prot...    25  2.8
TC9532 similar to UP|THIC_MYCLE (Q9ZBL0) Thiamine biosynthesis p...    25  2.8
TC11356 similar to GB|AAK44661.1|13879941|AE006947 thiamin biosy...    25  2.8
TC9585 similar to UP|O24078 (O24078) Protein phosphatase 2C, par...    24  6.3

>AU089205 
          Length = 396

 Score =  102 bits (254), Expect = 1e-23
 Identities = 52/53 (98%), Positives = 53/53 (99%)
 Frame = +2

Query: 1  MDSQKMSYNAGQAKGQAEEKTSNLMDMASNAAQSAKETVQGAGQQIKASAQGA 53
          MDSQKMSYNAGQAKGQAEEKTSNLMDMASNAAQSAKETVQGAGQQIKASAQG+
Sbjct: 38 MDSQKMSYNAGQAKGQAEEKTSNLMDMASNAAQSAKETVQGAGQQIKASAQGS 196



 Score = 37.0 bits (84), Expect = 7e-04
 Identities = 18/33 (54%), Positives = 23/33 (69%)
 Frame = +3

Query: 36  KETVQGAGQQIKASAQGAADAVKNATGMNNNSK 68
           K+  +G   + +   + AADAVKNATGMNNNSK
Sbjct: 144 KKLCKGLVNRSRHQHRXAADAVKNATGMNNNSK 242


>TC12179 weakly similar to UP|Q40709 (Q40709) WSI18 protein induced by water
           stress, partial (17%)
          Length = 582

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 24/86 (27%), Positives = 40/86 (45%), Gaps = 22/86 (25%)
 Frame = +2

Query: 1   MDSQKMSYNAGQAKGQAEEKTSNLMDMASNAAQSAKET---------------------- 38
           M S + ++NAGQ +GQ + K  + M     +A +A +                       
Sbjct: 65  MSSAQQNFNAGQNRGQTQAKAEDWMQSTKESASAAADRAHAAANTTGQTAEQNKEEAAGF 244

Query: 39  VQGAGQQIKASAQGAADAVKNATGMN 64
           +Q  G+Q+K  AQGA ++VK+  GM+
Sbjct: 245 IQQTGEQVKNMAQGAVESVKHTLGMD 322


>TC10095 weakly similar to UP|Q94FU1 (Q94FU1) Auxin-regulated dual
           specificity cytosolic kinase, partial (10%)
          Length = 555

 Score = 28.5 bits (62), Expect = 0.26
 Identities = 15/46 (32%), Positives = 23/46 (49%)
 Frame = +2

Query: 16  QAEEKTSNLMDMASNAAQSAKETVQGAGQQIKASAQGAADAVKNAT 61
           +A E+     D     A    + V+G+G   +AS +G ADA + AT
Sbjct: 155 KALEQLQEPKDTQKKGADPKGDRVRGSGLNHQASGKGGADATRKAT 292


>BP077142 
          Length = 385

 Score = 25.4 bits (54), Expect = 2.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 44  QQIKASAQGAADAVKNATGMNNNSK 68
           +++K  AQGA +AVK+  GM    +
Sbjct: 383 EKVKDMAQGATEAVKSTLGMGQKDE 309


>TC10173 weakly similar to UP|Q9LJQ3 (Q9LJQ3) Lipid transfer protein
           (AT3g18280/MIE15_7), partial (77%)
          Length = 671

 Score = 25.0 bits (53), Expect = 2.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 36  KETVQGAGQQIKASAQGAADAVKNAT 61
           ++ +   G Q+ ASA GAA A+ + T
Sbjct: 501 RQGLNATGLQVTASAMGAASAISSTT 578


>TC9532 similar to UP|THIC_MYCLE (Q9ZBL0) Thiamine biosynthesis protein
           thiC, partial (14%)
          Length = 1259

 Score = 25.0 bits (53), Expect = 2.8
 Identities = 14/27 (51%), Positives = 15/27 (54%)
 Frame = +3

Query: 15  GQAEEKTSNLMDMASNAAQSAKETVQG 41
           G AEE     MD  S   QSAK+TV G
Sbjct: 216 GTAEEALLRGMDAMSAEFQSAKKTVSG 296


>TC11356 similar to GB|AAK44661.1|13879941|AE006947 thiamin biosynthesis
           protein ThiC {Mycobacterium tuberculosis CDC1551;} ,
           partial (15%)
          Length = 565

 Score = 25.0 bits (53), Expect = 2.8
 Identities = 14/27 (51%), Positives = 15/27 (54%)
 Frame = +1

Query: 15  GQAEEKTSNLMDMASNAAQSAKETVQG 41
           G AEE     MD  S   QSAK+TV G
Sbjct: 253 GTAEEALLRGMDAMSAEFQSAKKTVSG 333


>TC9585 similar to UP|O24078 (O24078) Protein phosphatase 2C, partial (31%)
          Length = 502

 Score = 23.9 bits (50), Expect = 6.3
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = -1

Query: 18  EEKTSNLMDMASNAAQSAKETVQGAGQQIKASAQGAADAVKNATGM 63
           EEK            +   E     G++ +A A+   DAV++A G+
Sbjct: 328 EEKAVGGFGRRRRNGEEGDEEAAAEGEEAEAEAEAQDDAVEDALGL 191


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.295    0.108    0.262 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 370,183
Number of Sequences: 28460
Number of extensions: 1334
Number of successful extensions: 11
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 68
length of database: 4,897,600
effective HSP length: 44
effective length of query: 24
effective length of database: 3,645,360
effective search space: 87488640
effective search space used: 87488640
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.9 bits)
S2: 48 (23.1 bits)