TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0215b.3
         (66 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AU089205                                                               65  2e-12
TC12179 weakly similar to UP|Q40709 (Q40709) WSI18 protein induc...    39  2e-04
TC10152 weakly similar to UP|Q40869 (Q40869) Late embryogenesis ...    32  0.031
TC9585 similar to UP|O24078 (O24078) Protein phosphatase 2C, par...    30  0.12
TC9363 similar to UP|IM17_ARATH (Q9SP35) Mitochondrial import in...    25  2.9
BP077142                                                               25  3.8
TC16114 similar to UP|AAQ62433 (AAQ62433) At3g01800, partial (73%)     23  8.4

>AU089205 
          Length = 396

 Score = 65.5 bits (158), Expect = 2e-12
 Identities = 32/51 (62%), Positives = 41/51 (79%)
 Frame = +2

Query: 4  SQNLSHQAGQATGQAQEKASNMMGNARNAAQSAQQSCQEAGQQMKAKAQGA 54
          SQ +S+ AGQA GQA+EK SN+M  A NAAQSA+++ Q AGQQ+KA AQG+
Sbjct: 44 SQKMSYNAGQAKGQAEEKTSNLMDMASNAAQSAKETVQGAGQQIKASAQGS 196


>TC12179 weakly similar to UP|Q40709 (Q40709) WSI18 protein induced by water
           stress, partial (17%)
          Length = 582

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 27/85 (31%), Positives = 42/85 (48%), Gaps = 22/85 (25%)
 Frame = +2

Query: 4   SQNLSHQAGQATGQAQEKASNMMGNARNAA---------------QSAQQSCQEA----- 43
           S   +  AGQ  GQ Q KA + M + + +A               Q+A+Q+ +EA     
Sbjct: 71  SAQQNFNAGQNRGQTQAKAEDWMQSTKESASAAADRAHAAANTTGQTAEQNKEEAAGFIQ 250

Query: 44  --GQQMKAKAQGAADAVKSAIGANK 66
             G+Q+K  AQGA ++VK  +G +K
Sbjct: 251 QTGEQVKNMAQGAVESVKHTLGMDK 325


>TC10152 weakly similar to UP|Q40869 (Q40869) Late embryogenesis abundant
           protein, partial (15%)
          Length = 578

 Score = 31.6 bits (70), Expect = 0.031
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +1

Query: 8   SHQAGQATGQAQEKASNMMGNARNAAQSAQQSCQEAGQQMKAKAQGAADAV 58
           S+ A     +A++ A+ +   A+N  + A+Q+ QEA    K  A  AAD V
Sbjct: 286 SNAAEHINNKAKDTANQISDKAQNITEKAKQTMQEAWDSTKNNANKAADNV 438


>TC9585 similar to UP|O24078 (O24078) Protein phosphatase 2C, partial (31%)
          Length = 502

 Score = 29.6 bits (65), Expect = 0.12
 Identities = 13/45 (28%), Positives = 23/45 (50%)
 Frame = -1

Query: 19  QEKASNMMGNARNAAQSAQQSCQEAGQQMKAKAQGAADAVKSAIG 63
           +EKA    G  R   +   +     G++ +A+A+   DAV+ A+G
Sbjct: 328 EEKAVGGFGRRRRNGEEGDEEAAAEGEEAEAEAEAQDDAVEDALG 194


>TC9363 similar to UP|IM17_ARATH (Q9SP35) Mitochondrial import inner
           membrane translocase subunit TIM17, partial (68%)
          Length = 1085

 Score = 25.0 bits (53), Expect = 2.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 42  EAGQQMKAKAQGAADAVKSAIGA 64
           E G   +A A+ AAD V+ AIGA
Sbjct: 134 EGGAAHRAHAERAADVVEDAIGA 66


>BP077142 
          Length = 385

 Score = 24.6 bits (52), Expect = 3.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 45  QQMKAKAQGAADAVKSAIG 63
           +++K  AQGA +AVKS +G
Sbjct: 383 EKVKDMAQGATEAVKSTLG 327


>TC16114 similar to UP|AAQ62433 (AAQ62433) At3g01800, partial (73%)
          Length = 1297

 Score = 23.5 bits (49), Expect = 8.4
 Identities = 9/22 (40%), Positives = 15/22 (67%)
 Frame = +3

Query: 38  QSCQEAGQQMKAKAQGAADAVK 59
           +SC++A Q ++   Q A DA+K
Sbjct: 735 KSCEDARQSIRRARQKAMDAIK 800


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.300    0.108    0.271 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,624
Number of Sequences: 28460
Number of extensions: 2106
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of query: 66
length of database: 4,897,600
effective HSP length: 42
effective length of query: 24
effective length of database: 3,702,280
effective search space: 88854720
effective search space used: 88854720
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 48 (23.1 bits)