TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0214.10
         (74 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8529 homologue to UP|Q94KS2 (Q94KS2) TGF-beta receptor-interac...    74  7e-15
AV777710                                                               52  2e-08
AV416758                                                               52  3e-08
BP068184                                                               35  0.003
TC10965                                                                27  0.55

>TC8529 homologue to UP|Q94KS2 (Q94KS2) TGF-beta receptor-interacting
           protein 1, partial (44%)
          Length = 650

 Score = 73.6 bits (179), Expect = 7e-15
 Identities = 40/71 (56%), Positives = 48/71 (67%)
 Frame = +1

Query: 2   VLRGGQVASAVSTTDHHAGNFEAKFYDMILQEEFRDVKGHSGLINVMAFIMEERPALSDP 61
           VL GGQ ASAV+TTDH AG FEAKFYD ILQEE   VKGH G IN +AF  + + + S  
Sbjct: 205 VLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGK-SFSSG 381

Query: 62  VSDGHVLVQFY 72
             DG+V +  +
Sbjct: 382 GEDGYVRLHHF 414


>AV777710 
          Length = 232

 Score = 52.4 bits (124), Expect = 2e-08
 Identities = 24/29 (82%), Positives = 26/29 (88%)
 Frame = +1

Query: 46 NVMAFIMEERPALSDPVSDGHVLVQFYGN 74
          ++ A IMEERPALSDP SDGHVLVQFYGN
Sbjct: 52 DLRAQIMEERPALSDPASDGHVLVQFYGN 138


>AV416758 
          Length = 297

 Score = 51.6 bits (122), Expect = 3e-08
 Identities = 24/26 (92%), Positives = 24/26 (92%)
 Frame = +2

Query: 49  AFIMEERPALSDPVSDGHVLVQFYGN 74
           A IMEERPALSDPVSDGHVLV FYGN
Sbjct: 149 AEIMEERPALSDPVSDGHVLVHFYGN 226


>BP068184 
          Length = 415

 Score = 34.7 bits (78), Expect = 0.003
 Identities = 15/22 (68%), Positives = 16/22 (72%)
 Frame = -2

Query: 20  GNFEAKFYDMILQEEFRDVKGH 41
           G FEA+FYD IL EE   VKGH
Sbjct: 414 GKFEAQFYDQILPEEIGGVKGH 349


>TC10965 
          Length = 507

 Score = 27.3 bits (59), Expect = 0.55
 Identities = 10/19 (52%), Positives = 13/19 (67%)
 Frame = -1

Query: 15  TDHHAGNFEAKFYDMILQE 33
           T HH GNFE K Y ++ +E
Sbjct: 219 TQHHPGNFEMKQYQIVQKE 163


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.137    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 953,867
Number of Sequences: 28460
Number of extensions: 6818
Number of successful extensions: 26
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of query: 74
length of database: 4,897,600
effective HSP length: 50
effective length of query: 24
effective length of database: 3,474,600
effective search space: 83390400
effective search space used: 83390400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)