BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0212.11
(511 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC19389 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 69 1e-13
BP084332 48 3e-06
AV780009 43 1e-04
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 34 0.065
TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, p... 33 0.085
TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%) 32 0.19
BP043850 32 0.32
BP057233 31 0.42
TC14371 homologue to UP|ACOC_CUCMA (P49608) Aconitate hydratase,... 28 3.6
>TC19389 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (6%)
Length = 498
Score = 68.9 bits (167), Expect(2) = 1e-13
Identities = 43/99 (43%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Frame = +3
Query: 372 LIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*VL-SRTNTCCFV 430
L+ F GG VA SRL +C+ALST EAEFI TEAC E L +K Q+ S CC V
Sbjct: 3 LVTFAGGAVAWPSRLQKCVALSTAEAEFIAATEACHELLWMKNFLQNAWFHSHPILCCIV 182
Query: 431 IVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLEL 469
I K F L + F + +RD L ++LLEL
Sbjct: 183 ITKALFTLARILLFIQDPSTLMFVIIGLRDVLNSKLLEL 299
Score = 23.9 bits (50), Expect(2) = 1e-13
Identities = 15/35 (42%), Positives = 20/35 (56%)
Frame = +1
Query: 463 IARLLELVRFVQMVMVLI**LRNYREACLKLVV*L 497
I L L +F++M MVLI** + R L+ *L
Sbjct: 280 IPSCLSLRKFIRMTMVLI**QSHCRGRSLRFAT*L 384
>BP084332
Length = 368
Score = 48.1 bits (113), Expect = 3e-06
Identities = 30/84 (35%), Positives = 46/84 (54%)
Frame = +2
Query: 390 IALSTFEAEFIDITEACKEFL*LKKLFQD*VLSRTNTCCFVIVKVRFILRKSPTFHSTSK 449
IALST EAE+I + L +K +D + +N + L K+P HS +K
Sbjct: 41 IALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAK 220
Query: 450 HIDVRCHWIRDALIARLLELVRFV 473
HI+V+ H+IRD + +L L++FV
Sbjct: 221 HIEVKYHFIRDYVQKGVL-LLKFV 289
>AV780009
Length = 529
Score = 43.1 bits (100), Expect = 1e-04
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Frame = -1
Query: 363 DFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*VLS 422
D ++S +GY I +++ +++ ++ S+ EAE+ + E L LFQ L+
Sbjct: 409 DTRRSVTGYSIFLGTSLISWRTKKQTTVSRSSSEAEYRALAATVCEVQWLSYLFQFLKLN 230
Query: 423 -RTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLELV 470
F + + +PTFH +KHI++ CH +R L A L+ L+
Sbjct: 229 VPLPVPLFCDNQSALHIAHNPTFHERTKHIELDCHVVRAKLQAGLIHLL 83
>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (9%)
Length = 747
Score = 33.9 bits (76), Expect = 0.065
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +2
Query: 201 VKKQLGESFFMKDIGAA*HILGIRITRDRQE 231
+K QL F MKD+G A ILG++I RDR++
Sbjct: 155 LKAQLAREFDMKDLGPANKILGMQIHRDRKD 247
>TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, partial (4%)
Length = 670
Score = 33.5 bits (75), Expect = 0.085
Identities = 12/27 (44%), Positives = 19/27 (69%)
Frame = +1
Query: 444 FHSTSKHIDVRCHWIRDALIARLLELV 470
FH +KH+D+ CH +R+ L A+L L+
Sbjct: 115 FHERTKHLDIDCHVVREKLQAKLFHLL 195
>TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%)
Length = 553
Score = 32.3 bits (72), Expect = 0.19
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 441 SPTFHSTSKHIDVRCHWIRDALIARLLELV 470
+P FH +KHI++ CH +R+ + L+ L+
Sbjct: 97 NPVFHERTKHIEIDCHIVRERIQKGLIHLL 186
>BP043850
Length = 515
Score = 31.6 bits (70), Expect = 0.32
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -1
Query: 441 SPTFHSTSKHIDVRCHWIRDALIARLLEL 469
+P +H ++HI+V CH +R+A R++ L
Sbjct: 410 NPVYHEWTRHIEVDCHSVREAYDRRVITL 324
>BP057233
Length = 473
Score = 31.2 bits (69), Expect = 0.42
Identities = 11/26 (42%), Positives = 18/26 (68%)
Frame = -2
Query: 438 LRKSPTFHSTSKHIDVRCHWIRDALI 463
L +P H+ SKHI++ H+IRD ++
Sbjct: 415 LASNPVLHARSKHIEIDVHYIRDQVL 338
>TC14371 homologue to UP|ACOC_CUCMA (P49608) Aconitate hydratase,
cytoplasmic (Citrate hydro-lyase) (Aconitase) , partial
(28%)
Length = 1296
Score = 28.1 bits (61), Expect = 3.6
Identities = 14/37 (37%), Positives = 19/37 (50%)
Frame = -3
Query: 421 LSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHW 457
+SRT+T F + L +SP FH KHI + W
Sbjct: 433 ISRTSTAIFSSSEHNGGLARSPVFHCCIKHIKLLPRW 323
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.367 0.164 0.593
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,396,689
Number of Sequences: 28460
Number of extensions: 107926
Number of successful extensions: 1700
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 709
Number of HSP's gapped (non-prelim): 1056
length of query: 511
length of database: 4,897,600
effective HSP length: 94
effective length of query: 417
effective length of database: 2,222,360
effective search space: 926724120
effective search space used: 926724120
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0212.11