BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0211.5
(1428 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV780009 251 6e-67
BP075943 231 6e-61
AV410378 166 2e-41
AU088980 151 6e-37
TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%) 136 2e-32
TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, p... 129 3e-30
BP035453 110 2e-29
BP054557 122 3e-28
BP080584 111 7e-25
AV424544 102 6e-22
BP063694 97 2e-20
BP066094 91 2e-20
TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%) 93 3e-19
BP084332 89 6e-18
BP043850 82 6e-16
BP058111 75 7e-14
BP057233 72 5e-13
BP033602 72 5e-13
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 70 3e-12
AV409763 69 4e-12
>AV780009
Length = 529
Score = 251 bits (641), Expect = 6e-67
Identities = 117/163 (71%), Positives = 138/163 (83%)
Frame = -1
Query: 1244 AAHRVLRYIKGNPGCGLFYPADSSTTLTAFSDSDWAGCLDTRKSITGYCMFLGSSLISWR 1303
AA RVLRY+KG P GLF+ ADS L A+SDSDWAGC DTR+S+TGY +FLG+SLISWR
Sbjct: 526 AATRVLRYVKGAPAQGLFFSADSPLKLQAYSDSDWAGCPDTRRSVTGYSIFLGTSLISWR 347
Query: 1304 SKKQTTTSRSSCEAEYRAMAATVCEVQWLSYLLHDLQAPPSAPVSMYCDNQSAMHIAHNP 1363
+KKQTT SRSS EAEYRA+AATVCEVQWLSYL L+ PV ++CDNQSA+HIAHNP
Sbjct: 346 TKKQTTVSRSSSEAEYRALAATVCEVQWLSYLFQFLKLNVPLPVPLFCDNQSALHIAHNP 167
Query: 1364 SYHERTKHIEVDCHIVREKVQQGLVHLLPIASSHQLADIFTKP 1406
++HERTKHIE+DCH+VR K+Q GL+HLLPI++ HQLADIFTKP
Sbjct: 166 TFHERTKHIELDCHVVRAKLQAGLIHLLPISTHHQLADIFTKP 38
>BP075943
Length = 547
Score = 231 bits (589), Expect = 6e-61
Identities = 117/169 (69%), Positives = 139/169 (82%), Gaps = 1/169 (0%)
Frame = -3
Query: 1101 TTGSFTALLLYVDDVLLTGNDLHEIQLVKESLHAQFRIKDMGEAKFFLGLEIARSKAGIV 1160
++GSFTALLLYVDDVLL GND+HEIQLVK SLH QFRIKD+GEAK+FLGLEIARS +GIV
Sbjct: 542 SSGSFTALLLYVDDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIV 363
Query: 1161 LNQRKYALELLSDSGLLGGKPT-TTPMDSSQKFGLSTDTPLSDISSYRRLIGKLLYLTTT 1219
LNQRKYAL+L+SDSG G +P + +SQ G +T TPL+DI SYRR++G+LLYL TT
Sbjct: 362 LNQRKYALQLISDSGHFGFQPRFYSHGTNSQTLGTNTGTPLTDIGSYRRIVGRLLYLNTT 183
Query: 1220 RPDIAYVVNQLSQFLSAPTNVHEAAAHRVLRYIKGNPGCGLFYPADSST 1268
RPDI + VNQLSQFLSAPT++HE L+Y+ G+PG GLFYPA SST
Sbjct: 182 RPDITFAVNQLSQFLSAPTDIHEQQLTGFLKYL*GSPGSGLFYPASSST 36
>AV410378
Length = 358
Score = 166 bits (421), Expect = 2e-41
Identities = 83/119 (69%), Positives = 89/119 (74%)
Frame = +1
Query: 838 PNTSEPSSDPVLDNNHRTSTRTRKQPSYLQDYHCSLIASTAVSSSSSSKGTSYPLSKVIS 897
P SE S+P N R S R R+ PSYLQDYHC+L AST VS SS G SYPLSKVIS
Sbjct: 1 PLPSETLSNPEEGNVQRISNRVRRPPSYLQDYHCTLAASTTVSKVPSSAGISYPLSKVIS 180
Query: 898 YCNLAPAYHTFVMNITAVVEPKRYSEAVKHDSWRKAMDQEIEALERNHTWILVDKPHDK 956
Y L P+Y F+MNIT V EP RYSEAVKH+ WRKAMDQEIEALERNHTWILVDKP DK
Sbjct: 181 YHKLTPSYRAFIMNITTVSEPTRYSEAVKHECWRKAMDQEIEALERNHTWILVDKPPDK 357
>AU088980
Length = 360
Score = 151 bits (382), Expect = 6e-37
Identities = 70/115 (60%), Positives = 88/115 (75%)
Frame = +2
Query: 669 NSIVERKHQHILNVARALLFQAHLPKIFWAHAIVHAVFLINRLPSPVLDGKCPFQILHKV 728
NSIVERKH+HILNV RAL+F ++LPK W A+ HA +LIN LPSP+L G+CP+Q L+
Sbjct: 2 NSIVERKHRHILNVTRALMFHSYLPKNLWTFAVKHAAYLINXLPSPLLKGQCPYQFLNND 181
Query: 729 LPDLTNLKVFGSLCFASTLVSHRTKFDPRAKRCVFLGFKPGTKGYIVYDLKSNDI 783
P L +LKVFG+LC++STL + K DPRA++CVFLGFK GT GYIV DL + I
Sbjct: 182 SPTLLDLKVFGTLCYSSTLTHNXQKLDPRARKCVFLGFKTGTXGYIVMDLPTTXI 346
>TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%)
Length = 553
Score = 136 bits (343), Expect = 2e-32
Identities = 62/98 (63%), Positives = 77/98 (78%)
Frame = +1
Query: 1330 QWLSYLLHDLQAPPSAPVSMYCDNQSAMHIAHNPSYHERTKHIEVDCHIVREKVQQGLVH 1389
QWL+YLL DL+ P P +YCDN SA HIA NP +HERTKHIE+DCHIVRE++Q+GL+H
Sbjct: 1 QWLTYLLQDLKVPFEQPALVYCDNNSARHIAANPVFHERTKHIEIDCHIVRERIQKGLIH 180
Query: 1390 LLPIASSHQLADIFTKPLTPAPFRHIFSKLGMYDIHSP 1427
LLPI+SS LADI+TK L+P F I +KLG+ +I SP
Sbjct: 181 LLPISSSEPLADIYTKALSPQNFHQICAKLGLINICSP 294
>TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, partial (4%)
Length = 670
Score = 129 bits (324), Expect = 3e-30
Identities = 58/100 (58%), Positives = 76/100 (76%)
Frame = +1
Query: 1327 CEVQWLSYLLHDLQAPPSAPVSMYCDNQSAMHIAHNPSYHERTKHIEVDCHIVREKVQQG 1386
CE+ WL+Y+L DL+ P +P +YCD+QSA HIA N +HERTKH+++DCH+VREK+Q
Sbjct: 1 CEL*WLTYILQDLRVPFISPSLLYCDSQSARHIATNAVFHERTKHLDIDCHVVREKLQAK 180
Query: 1387 LVHLLPIASSHQLADIFTKPLTPAPFRHIFSKLGMYDIHS 1426
L HLLPI+S Q ADI TKPL PF H+ SKLG+ +I+S
Sbjct: 181 LFHLLPISSVDQTADILTKPLESGPFSHLVSKLGVLNIYS 300
>BP035453
Length = 550
Score = 110 bits (276), Expect = 1e-24
Identities = 59/84 (70%), Positives = 68/84 (80%), Gaps = 1/84 (1%)
Frame = -3
Query: 281 RSANLAHSTGEDQDSVDQENASGQDAARFGFTADQYHHLLALLPPSESKASSS-QHTASV 339
+SAN H EDQ+S Q +SGQD RFGFTADQY HLLALLP SESK+SSS QHTASV
Sbjct: 548 KSANCVHIADEDQES--QGGSSGQDT-RFGFTADQYQHLLALLPTSESKSSSSSQHTASV 378
Query: 340 NSCAQVLPTKNGNGTSQVLPTRNG 363
NSCAQVLPTK+GNG++ +PT+NG
Sbjct: 377 NSCAQVLPTKHGNGSTSTVPTKNG 306
Score = 105 bits (262), Expect(2) = 2e-29
Identities = 54/86 (62%), Positives = 66/86 (75%), Gaps = 2/86 (2%)
Frame = -1
Query: 460 DSNACKMIGTVRAVKGLYIFNKSSISSLASCNSISTSVN--PSVHSSSICTFQSNVHNLW 517
DS+A + IGTV+AVKGLYI NKSS++ L+ CNS+ ++VN SV+ SS F +VHNLW
Sbjct: 307 DSSAWRTIGTVKAVKGLYILNKSSVTPLSHCNSVHSTVNIPSSVNVSS--HFDPSVHNLW 134
Query: 518 HYRLGHPSLVKGQSINELFPYVQCSK 543
HYRLGHPS VKGQSI +LFPYV K
Sbjct: 133 HYRLGHPSFVKGQSIRDLFPYVHVLK 56
Score = 42.0 bits (97), Expect(2) = 2e-29
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = -3
Query: 536 FPYVQCSKAHVCDVCPVAKQKRMSFP 561
F C+K H+CDVCP+ KQK++SFP
Sbjct: 80 FSLCTCTKDHICDVCPLLKQKKLSFP 3
>BP054557
Length = 538
Score = 122 bits (307), Expect = 3e-28
Identities = 67/184 (36%), Positives = 97/184 (52%), Gaps = 1/184 (0%)
Frame = -2
Query: 371 ILDTGATDHICNTLSYFSSYKHVEPIPVSLPNGIVETTTIKGTIQITPSFILANVLFLPN 430
+LDTGAT H+C+ L F + + V P+ +S+PNG E + ++ + F LA VL++P+
Sbjct: 537 LLDTGATHHVCHNLDVFQALRQVHPVLLSMPNGQKEIAHMADSVYFSEKFFLAXVLYVPS 358
Query: 431 FEFNLISVHKLVKCLRYRLIFEDDLCLIQDSNACKMIGTVRAVKGLYIFNKSSISSLASC 490
F FNLISV LVK L RL+ D+ CL+Q+ K IG GLY ++ A
Sbjct: 357 FNFNLISVSALVKSLNCRLVIFDECCLLQERPTLKTIGAAEERGGLYAVIDPAVK--AKH 184
Query: 491 NSISTSVNPSVHSSSICTFQSNVHNLWHYRLGHPSLVKGQSINELFPYVQCSK-AHVCDV 549
++ V + C F NLWH RLGH S K + + FP++ C + CD
Sbjct: 183 PPAEGNIKTQVSHFNFCQFDC---NLWHLRLGHTSSKKLAILQKNFPFITCKQITSPCDT 13
Query: 550 CPVA 553
C +A
Sbjct: 12 CHMA 1
>BP080584
Length = 507
Score = 111 bits (278), Expect = 7e-25
Identities = 55/109 (50%), Positives = 71/109 (64%), Gaps = 11/109 (10%)
Frame = -3
Query: 457 LIQDSNACKMIGTVRAVKGLYIFNKSSISSLAS--CNSISTSVN---------PSVHSSS 505
LI D +A K IGT RAVKGLY+ K + S S CNS+S + N P V ++
Sbjct: 328 LIMDYSAYKRIGTARAVKGLYLLMKGNPKSTTSVTCNSVSPACNSVSVSGSDSPVVDTNL 149
Query: 506 ICTFQSNVHNLWHYRLGHPSLVKGQSINELFPYVQCSKAHVCDVCPVAK 554
C F ++HNLWH+RLGHPS VK QSI ++FPY+ C+K VCD+CP+AK
Sbjct: 148 ACNFIPSMHNLWHFRLGHPSFVKEQSIRDIFPYIVCNKEQVCDICPLAK 2
Score = 57.4 bits (137), Expect = 2e-08
Identities = 31/52 (59%), Positives = 34/52 (64%)
Frame = -2
Query: 300 NASGQDAARFGFTADQYHHLLALLPPSESKASSSQHTASVNSCAQVLPTKNG 351
NA G A FG TADQYHHL+ALLP + K S T SVNSC Q +PT NG
Sbjct: 458 NAYG--TASFGLTADQYHHLMALLPAQDQKDS---RTPSVNSCVQEIPTHNG 318
>AV424544
Length = 276
Score = 102 bits (253), Expect = 6e-22
Identities = 51/90 (56%), Positives = 65/90 (71%)
Frame = +3
Query: 1077 LCKALHTLGFSPSSADHTLYIKKGTTGSFTALLLYVDDVLLTGNDLHEIQLVKESLHAQF 1136
L LH LG+ S+ DH+L+ K SFT +L+YVDD++L GNDL+EIQ VK L QF
Sbjct: 9 LSSYLHILGYIQSAHDHSLFTKF-RDASFTVILVYVDDLILAGNDLNEIQCVKNKLDIQF 185
Query: 1137 RIKDMGEAKFFLGLEIARSKAGIVLNQRKY 1166
RIKD+G K+FLGLE+ARS G+ L+QRKY
Sbjct: 186 RIKDLGTLKYFLGLEVARSSCGLFLSQRKY 275
>BP063694
Length = 511
Score = 97.1 bits (240), Expect = 2e-20
Identities = 60/189 (31%), Positives = 97/189 (50%), Gaps = 8/189 (4%)
Frame = -2
Query: 450 IFEDDLCLIQDSNACKMIGTVRAVKGLYIFNKSSISSLASCNSISTSVNPSVHSSSICTF 509
IF DD +IQ+ ++G R +GLY+ N+ S ++ T+ +P +S
Sbjct: 510 IFLDDSFVIQNRKTGAVLGRXRCDQGLYVLNQDS-------QALLTTSSPLPRAS----- 367
Query: 510 QSNVHNLWHYRLGHPS--LVKGQ------SINELFPYVQCSKAHVCDVCPVAKQKRMSFP 561
LWH RLGH + ++K ++ + P C C C +AK KR+ F
Sbjct: 366 ----FELWHSRLGHVNFDIIKQLHKHGCLDVSSILPKPIC-----CTSCQMAKSKRLVFH 214
Query: 562 LSVTQSTAIFQLIHVDIWGPVSIVSLHGFSYFLTIVDDYSRFTWIYLLKS*AEVKNLVQE 621
+ +++A+ LIH D+ GP + S+ GFSYF+ VDD+SRFTW Y LK ++ +++
Sbjct: 213 DNNKRASAVLDLIHCDLRGPSPVASIDGFSYFVIFVDDFSRFTWFYPLKRKSDFSDVLLR 34
Query: 622 FCALVANQF 630
F + N+F
Sbjct: 33 FKVFMENRF 7
>BP066094
Length = 532
Score = 91.3 bits (225), Expect(2) = 2e-20
Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 1/150 (0%)
Frame = +2
Query: 1003 AKMTTLRVLLALASSYNWFLHQLDVDNAFLHAQLDEEIYMSLPQGLHTEK-PNQVCLLQK 1061
+K +R+L++ + ++N LHQ++V +AFL+ + EE+Y+ P G EK + + L+K
Sbjct: 86 SKTEAIRLLISFSVNHNIILHQMNVKSAFLNGYISEEVYVHQPPGXEDEKNSDHIFKLKK 265
Query: 1062 SLYGLKQASRQWYTTLCKALHTLGFSPSSADHTLYIKKGTTGSFTALLLYVDDVLLTGND 1121
SLYGLKQA R WY L L D TL+ K + +YVDD++ +
Sbjct: 266 SLYGLKQAPRAWYERLSSFLLENEXVRGKVDTTLFCKT-YKDDILIVQIYVDDIIFGSAN 442
Query: 1122 LHEIQLVKESLHAQFRIKDMGEAKFFLGLE 1151
+ E + A+F ++ MGE K+FLG++
Sbjct: 443 PSLCKEFSEMMQAEFEMRMMGELKYFLGIQ 532
Score = 26.2 bits (56), Expect(2) = 2e-20
Identities = 10/18 (55%), Positives = 15/18 (82%)
Frame = +3
Query: 987 YTQLEGIDFIDTFSPVAK 1004
Y+Q GID+ +TF+PVA+
Sbjct: 39 YSQQ*GIDYTETFAPVAR 92
>TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%)
Length = 550
Score = 92.8 bits (229), Expect = 3e-19
Identities = 42/82 (51%), Positives = 60/82 (72%)
Frame = +3
Query: 1327 CEVQWLSYLLHDLQAPPSAPVSMYCDNQSAMHIAHNPSYHERTKHIEVDCHIVREKVQQG 1386
CE WL+Y L DL+ V +YCDN+SA+H+A N +H+RT++IE+DCHIV KV G
Sbjct: 18 CEALWLTYALADLRIASLLLVVIYCDNRSALHLAANSVFHKRTENIEIDCHIV*VKVLFG 197
Query: 1387 LVHLLPIASSHQLADIFTKPLT 1408
++HLL + SS Q+AD+FTK ++
Sbjct: 198 ILHLLHVPSSDQVADVFTKTIS 263
>BP084332
Length = 368
Score = 88.6 bits (218), Expect = 6e-18
Identities = 46/113 (40%), Positives = 67/113 (58%)
Frame = +2
Query: 1307 QTTTSRSSCEAEYRAMAATVCEVQWLSYLLHDLQAPPSAPVSMYCDNQSAMHIAHNPSYH 1366
Q+T + S+ EAEY + A ++ W+ + L D Q S + +YCDN +A+ ++ NP H
Sbjct: 32 QSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESN-IPIYCDNTAAISLSKNPILH 208
Query: 1367 ERTKHIEVDCHIVREKVQQGLVHLLPIASSHQLADIFTKPLTPAPFRHIFSKL 1419
R KHIEV H +R+ VQ+G++ L + + HQ ADIFTKPL F I L
Sbjct: 209 SRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNL 367
>BP043850
Length = 515
Score = 82.0 bits (201), Expect = 6e-16
Identities = 43/92 (46%), Positives = 57/92 (61%)
Frame = -1
Query: 1328 EVQWLSYLLHDLQAPPSAPVSMYCDNQSAMHIAHNPSYHERTKHIEVDCHIVREKVQQGL 1387
E+ WL LL +L S P ++ DN SA+ IA NP YHE T+HIEVDCH VRE + +
Sbjct: 512 EIIWLRGLLSELGFLQSQPTPLHADNTSAIQIAANPVYHEWTRHIEVDCHSVREAYDRRV 333
Query: 1388 VHLLPIASSHQLADIFTKPLTPAPFRHIFSKL 1419
+ L +++S Q+ADI TK LT + SKL
Sbjct: 332 ITLPHVSTSVQIADILTKSLTRQRHNFLVSKL 237
>BP058111
Length = 570
Score = 75.1 bits (183), Expect = 7e-14
Identities = 58/185 (31%), Positives = 90/185 (48%), Gaps = 5/185 (2%)
Frame = -1
Query: 396 IPVSLPNGIVETTTIKGTIQITPSFILANV----LFLPNFEFNLISVHKLVKCLRYRLIF 451
+ + +PN +V ++K IQ +L+N L+ F L+ +H++++ L L
Sbjct: 531 VMILMPNRLV-LLSLKSIIQHR-GLLLSNRRLYWLYCLRFLPVLVRLHQVIRLLL--L*Q 364
Query: 452 EDDLCLIQDSNACKMIGTVRAVKGLYIFNKSSISSLASCNSISTSVNPSVHSSSICTFQS 511
+ L + Q+ KMIG LY ++ + ++ V + C F
Sbjct: 363 KMVLAIHQERPTLKMIGAAEERGDLYALIDPAVK--VKHPPVEDNIKTQVSHFNFCQFDC 190
Query: 512 NVHNLWHYRLGHPSLVKGQSINELFPYVQCSK-AHVCDVCPVAKQKRMSFPLSVTQSTAI 570
N LWH RLGH S K + + FP++ C K CD C +AKQK++SFP SVT S+ I
Sbjct: 189 N---LWHLRLGHTSSKKLAILQKNFPFITCKKITSPCDTCHMAKQKKLSFPNSVTLSSEI 19
Query: 571 FQLIH 575
F LIH
Sbjct: 18 FDLIH 4
Score = 32.3 bits (72), Expect = 0.54
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = -3
Query: 289 TGEDQDSVDQENASG----QDAARFGFTADQYHHLLALLPPSESKASSSQHTASVNSCAQ 344
T ED D D ++A + + GFTA+Q LLALL P ++SS +S N A
Sbjct: 544 TQEDGDDFDAKSACSFKPEVNHSTPGFTAEQ*KTLLALLSPF---STSSGQASSSNQIAT 374
Query: 345 VLPTKNGNGTSQVLP 359
V+ +NG+G + P
Sbjct: 373 VV-AENGSGNTSGTP 332
>BP057233
Length = 473
Score = 72.4 bits (176), Expect = 5e-13
Identities = 37/85 (43%), Positives = 54/85 (63%)
Frame = -2
Query: 1343 PSAPVSMYCDNQSAMHIAHNPSYHERTKHIEVDCHIVREKVQQGLVHLLPIASSHQLADI 1402
P P+ ++CDN SA +A NP H R+KHIE+D H +R++V Q V + + ++ Q+AD
Sbjct: 460 PRKPI-LWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQNEVVVAYVPTTDQIADC 284
Query: 1403 FTKPLTPAPFRHIFSKLGMYDIHSP 1427
TKPL+ F + KLG+ IHSP
Sbjct: 283 LTKPLSHTRFSQLRDKLGV--IHSP 215
>BP033602
Length = 533
Score = 72.4 bits (176), Expect = 5e-13
Identities = 47/143 (32%), Positives = 67/143 (45%), Gaps = 6/143 (4%)
Frame = +3
Query: 465 KMIGTVRAVKGLYIFNKSSISSLAS--CNSISTSVNPSVHSSSICTFQSNVHNLWHYRLG 522
KMIG+ + GLY F + + A C TSV + LWH RLG
Sbjct: 156 KMIGSAKMKDGLYYFEDTFRNKAAQGLCGMSCTSVRDQIM-------------LWHNRLG 296
Query: 523 HPSLVKGQSINELFP----YVQCSKAHVCDVCPVAKQKRMSFPLSVTQSTAIFQLIHVDI 578
HP+ Q + LFP V CS C+ C +AK +R + ++ F LIH D+
Sbjct: 297 HPNF---QYLRHLFPDLFKNVNCSSLE-CESCVLAKNQRAPYYSQPYHASRPFYLIHSDV 464
Query: 579 WGPVSIVSLHGFSYFLTIVDDYS 601
WGP I + G +F+T +DD++
Sbjct: 465 WGPSKITTQFGKRWFVTFIDDHT 533
>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (9%)
Length = 747
Score = 69.7 bits (169), Expect = 3e-12
Identities = 45/142 (31%), Positives = 73/142 (50%), Gaps = 9/142 (6%)
Frame = +2
Query: 1083 TLGFSPSSADHTLYIKKGTTGSFTALLLYVDDVLLTGNDLHEIQLVKESLHAQFRIKDMG 1142
+LG++ S+DH Y K+ F LLLYVDD+L+ G + +Q +K L +F +KD+G
Sbjct: 20 SLGYNRLSSDHCTYHKRFDDNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLG 199
Query: 1143 EAKFFLGLEIARSKAG--IVLNQRKYALELLSDSGLLGGKPTTTPMDSSQKFGLSTDTPL 1200
A LG++I R + I L+Q+ Y ++L + P +TP+ + K S+ P
Sbjct: 200 PANKILGMQIHRDRKDRRIWLSQKNYLQKVLRRFNMQDCNPISTPLPVNYKLS-SSMIPS 376
Query: 1201 SDIS-------SYRRLIGKLLY 1215
S+ Y +G L+Y
Sbjct: 377 SEAERMEMSRVPYASAVGSLMY 442
>AV409763
Length = 426
Score = 69.3 bits (168), Expect = 4e-12
Identities = 30/63 (47%), Positives = 45/63 (70%)
Frame = +2
Query: 1 LSEGNYHNWARAMKMSLLTKNKLGFVDGTIAEPPQDHPVLPFWQRCNMLVLSWLIKSISV 60
L+ NY +W+RAM+M+L+ KNKLGFVD +I P + P+ WQR N +V SW++ S+S
Sbjct: 233 LTGDNYRSWSRAMRMALIAKNKLGFVDASILVPDELDPLFHPWQRNNNIVASWILNSVSK 412
Query: 61 EIA 63
++A
Sbjct: 413 DLA 421
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.134 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,559,751
Number of Sequences: 28460
Number of extensions: 432545
Number of successful extensions: 2699
Number of sequences better than 10.0: 109
Number of HSP's better than 10.0 without gapping: 2586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2659
length of query: 1428
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1326
effective length of database: 1,994,680
effective search space: 2644945680
effective search space used: 2644945680
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0211.5