BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0211.20
(162 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC9147 similar to UP|AAR92268 (AAR92268) At1g47570, partial (8%) 78 6e-32
BU494199 62 1e-15
BP054456 39 5e-05
TC12145 similar to UP|Q9ZVP6 (Q9ZVP6) T7A14.1 protein (Fragment)... 41 9e-05
AV776810 40 2e-04
TC13305 weakly similar to UP|O29528 (O29528) Cobalt transport pr... 37 0.001
TC9788 similar to PIR|T47605|T47605 RING finger-like protein - A... 32 0.070
TC16025 weakly similar to UP|SN21_HUMAN (P28370) Possible global... 32 0.070
TC10253 similar to UP|Q9LLM2 (Q9LLM2) MTD2, partial (28%) 27 1.7
BP069831 27 2.2
BG662453 27 2.2
TC9165 similar to UP|DME_ARATH (Q8LK56) Transcriptional activato... 26 3.8
TC15339 similar to UP|Q84VJ1 (Q84VJ1) Biostress-resistance-relat... 25 5.0
BP072112 25 6.5
TC14669 similar to PIR|E86326|E86326 protein F18O14.3 [imported]... 25 6.5
TC16462 25 8.5
CB827703 25 8.5
BP038094 25 8.5
>TC9147 similar to UP|AAR92268 (AAR92268) At1g47570, partial (8%)
Length = 657
Score = 77.8 bits (190), Expect(2) = 6e-32
Identities = 32/41 (78%), Positives = 36/41 (87%)
Frame = +1
Query: 99 GDWWIYETNHIIQMNPIWIKSWQSLMLYTFHPRKRLQILTL 139
GDWWIY TNHI+QMNP+WI SW SLMLYTFH R++L ILTL
Sbjct: 130 GDWWIYGTNHIMQMNPMWINSWPSLMLYTFHSREKLPILTL 252
Score = 74.7 bits (182), Expect(2) = 6e-32
Identities = 42/52 (80%), Positives = 43/52 (81%), Gaps = 3/52 (5%)
Frame = +3
Query: 54 DTLEEQVMSKERFEVSVANAANNLRLLSVKSSVDHSDGVTELVGSG---DWW 102
+TLEEQVMSKERFEVSV NAANNLRLL SVDHSDGVTELVGSG D W
Sbjct: 3 ETLEEQVMSKERFEVSVTNAANNLRLL---CSVDHSDGVTELVGSGGLVDLW 149
>BU494199
Length = 570
Score = 62.4 bits (150), Expect(2) = 1e-15
Identities = 32/50 (64%), Positives = 36/50 (72%)
Frame = +2
Query: 17 LVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMSKERF 66
L FVEHD N MRDHQAMD+A RLGQ+KVVNVHR +VMS +RF
Sbjct: 419 LFFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRPNNAWYFGREVMSLQRF 568
Score = 35.4 bits (80), Expect(2) = 1e-15
Identities = 15/17 (88%), Positives = 16/17 (93%)
Frame = +1
Query: 3 HVGGFGMNLTSADTLVF 19
HVGG G+NLTSADTLVF
Sbjct: 376 HVGGLGLNLTSADTLVF 426
>BP054456
Length = 494
Score = 39.3 bits (90), Expect(2) = 5e-05
Identities = 18/26 (69%), Positives = 19/26 (72%)
Frame = -1
Query: 99 GDWWIYETNHIIQMNPIWIKSWQSLM 124
GDW IY TNH IQ + I I SWQSLM
Sbjct: 479 GDWRIYGTNHNIQRSTI*INSWQSLM 402
Score = 21.9 bits (45), Expect(2) = 5e-05
Identities = 13/29 (44%), Positives = 17/29 (57%), Gaps = 4/29 (13%)
Frame = -3
Query: 129 HPRKRLQILTL----ALRKVRFDRLVGAL 153
+PR RLQILTL L + F R + +L
Sbjct: 363 YPRARLQILTL*HQIFLSSMPFTRFLSSL 277
>TC12145 similar to UP|Q9ZVP6 (Q9ZVP6) T7A14.1 protein (Fragment), partial
(76%)
Length = 664
Score = 41.2 bits (95), Expect = 9e-05
Identities = 20/70 (28%), Positives = 39/70 (55%)
Frame = +2
Query: 2 IHVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVM 61
+ G +NLT A + +E N + QA D+ R+GQ K + V + I +T+EE+++
Sbjct: 62 LKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPIRVVKFITENTVEERIL 241
Query: 62 SKERFEVSVA 71
++ + +V+
Sbjct: 242 ELQQKKEAVS 271
>AV776810
Length = 360
Score = 40.0 bits (92), Expect = 2e-04
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +2
Query: 25 NSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMSK 63
N D QA D+ R+GQ + V+++RLI T+EE ++ K
Sbjct: 5 NPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 121
>TC13305 weakly similar to UP|O29528 (O29528) Cobalt transport protein
(CBIQ-1), partial (8%)
Length = 488
Score = 37.4 bits (85), Expect = 0.001
Identities = 19/62 (30%), Positives = 38/62 (60%), Gaps = 2/62 (3%)
Frame = +2
Query: 2 IHVG--GFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQ 59
IHV F +LT+A + +E + + + +D R+G +++VNV +LIM +++EE+
Sbjct: 5 IHVDEINFSCDLTAASRIYLMEPYLSPEIEARMIDLVHRIGPDQIVNVVKLIMHNSIEEK 184
Query: 60 VM 61
++
Sbjct: 185IL 190
>TC9788 similar to PIR|T47605|T47605 RING finger-like protein - Arabidopsis
thaliana {Arabidopsis thaliana;}, partial (6%)
Length = 696
Score = 31.6 bits (70), Expect = 0.070
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +2
Query: 29 DHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVM 61
+ Q + +A R+G + ++V L MR T+EEQ++
Sbjct: 128 EEQVISRAHRMGASRPIHVETLAMRGTIEEQML 226
>TC16025 weakly similar to UP|SN21_HUMAN (P28370) Possible global
transcription activator SNF2L1, partial (3%)
Length = 550
Score = 31.6 bits (70), Expect = 0.070
Identities = 17/40 (42%), Positives = 28/40 (69%), Gaps = 3/40 (7%)
Frame = +3
Query: 35 KARRLGQEKVVNVHRLIMRDTLEEQVMS---KERFEVSVA 71
+A R+GQ + V V RL +RDT+E+++++ K+R VS A
Sbjct: 3 RAHRIGQTRPVTVLRLTVRDTVEDRILALQPKKRKMVSSA 122
>TC10253 similar to UP|Q9LLM2 (Q9LLM2) MTD2, partial (28%)
Length = 531
Score = 26.9 bits (58), Expect = 1.7
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 96 VGSGDWWIY-ETNHIIQMNPIWIKSWQSLMLYTFHPRKRLQILTLALRKVRFD 147
V SGD WIY + + I+ M ++ ++ + L LY + L ++ R V FD
Sbjct: 207 VNSGDLWIYTDMSEIVDMGTVFKENCKMLFLYI----ESLPLIIPDPRHVSFD 353
>BP069831
Length = 423
Score = 26.6 bits (57), Expect = 2.2
Identities = 17/75 (22%), Positives = 34/75 (44%), Gaps = 2/75 (2%)
Frame = -1
Query: 75 NNLRLLSVKSSVDHSDGVTELVGSGDWWIYETNHIIQMN--PIWIKSWQSLMLYTFHPRK 132
+++ +L + +H DG T G W+YE + + P+ ++WQ L + H R
Sbjct: 321 SSISVLDINPDSEHKDGDTGWPGMMSIWVYELDSMYDHPNLPMAGEAWQLLEIQC-HSRL 145
Query: 133 RLQILTLALRKVRFD 147
+ + ++FD
Sbjct: 144 AARCFQKPKKGLKFD 100
>BG662453
Length = 460
Score = 26.6 bits (57), Expect = 2.2
Identities = 18/55 (32%), Positives = 24/55 (42%), Gaps = 10/55 (18%)
Frame = -2
Query: 113 NPIWIKSWQSLMLYTFHPRKRLQI----------LTLALRKVRFDRLVGALGRDV 157
NPI SW SL+ + F+ LQ L LR + F+R GRD+
Sbjct: 240 NPIVSGSWLSLLKFAFNSSNALQFSIDLGRYSMRLPETLRTLSFERHPTEFGRDL 76
>TC9165 similar to UP|DME_ARATH (Q8LK56) Transcriptional activator DEMETER
(DNA glycosylase-related protein DME), partial (3%)
Length = 562
Score = 25.8 bits (55), Expect = 3.8
Identities = 7/13 (53%), Positives = 11/13 (83%)
Frame = +3
Query: 98 SGDWWIYETNHII 110
SG+WW +TNH++
Sbjct: 297 SGEWWSLKTNHLL 335
>TC15339 similar to UP|Q84VJ1 (Q84VJ1) Biostress-resistance-related protein
(Fragment), partial (59%)
Length = 1111
Score = 25.4 bits (54), Expect = 5.0
Identities = 15/43 (34%), Positives = 23/43 (52%), Gaps = 2/43 (4%)
Frame = +1
Query: 119 SWQSLMLYTFHPRKRLQILTLA--LRKVRFDRLVGALGRDV*R 159
+W+ L+L+T HP L+ + +A +R RLV G V R
Sbjct: 478 AWEQLLLFTLHPALLLENMGMAILIRPT*VQRLV*VAGFHVQR 606
>BP072112
Length = 545
Score = 25.0 bits (53), Expect = 6.5
Identities = 17/84 (20%), Positives = 37/84 (43%)
Frame = -2
Query: 43 KVVNVHRLIMRDTLEEQVMSKERFEVSVANAANNLRLLSVKSSVDHSDGVTELVGSGDWW 102
K + LI+R +++ ++ ++AN +L++L + S +D + W
Sbjct: 478 KFKELETLILR---QDKAQLEDSTVETIANCCRDLQILDLSQSFKLTDRSLYAIAHASW* 308
Query: 103 IYETNHIIQMNPIWIKSWQSLMLY 126
Y T H + SW +L+++
Sbjct: 307 PYPTKHQWVFSI*RQCSWLTLLVF 236
>TC14669 similar to PIR|E86326|E86326 protein F18O14.3 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(77%)
Length = 1120
Score = 25.0 bits (53), Expect = 6.5
Identities = 12/52 (23%), Positives = 23/52 (44%)
Frame = +3
Query: 103 IYETNHIIQMNPIWIKSWQSLMLYTFHPRKRLQILTLALRKVRFDRLVGALG 154
++E H+ Q + I Q ++ +HP + +R +RLV +G
Sbjct: 435 VWEGLHLRQQQDLGISHCQQHLVVLYHPCLTFNCMGFMVRPCMVERLVSHMG 590
>TC16462
Length = 664
Score = 24.6 bits (52), Expect = 8.5
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -1
Query: 114 PIWIKSWQSLMLY 126
PIWI +WQ ++Y
Sbjct: 211 PIWISAWQDSLIY 173
>CB827703
Length = 555
Score = 24.6 bits (52), Expect = 8.5
Identities = 10/30 (33%), Positives = 15/30 (49%)
Frame = +2
Query: 95 LVGSGDWWIYETNHIIQMNPIWIKSWQSLM 124
++G G WI+ + WI SW+ LM
Sbjct: 179 ILGKGGSWIWIVRLEMSF*AFWILSWRCLM 268
>BP038094
Length = 571
Score = 24.6 bits (52), Expect = 8.5
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +3
Query: 116 WIKSWQSLMLY 126
W K+WQSLML+
Sbjct: 267 WTKTWQSLMLF 299
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.326 0.139 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,427,387
Number of Sequences: 28460
Number of extensions: 29564
Number of successful extensions: 240
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of query: 162
length of database: 4,897,600
effective HSP length: 83
effective length of query: 79
effective length of database: 2,535,420
effective search space: 200298180
effective search space used: 200298180
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0211.20