TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0211.14
         (280 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18793 similar to UP|O04035 (O04035) F7G19.18 protein, partial ...   341  9e-95
TC17076                                                               131  1e-31
TC11399                                                               107  3e-24
TC10071                                                                56  8e-09
TC12667 similar to PIR|D96525|D96525 protein T1N15.19 [imported]...    30  0.35
TC10795 similar to UP|Q9SGZ6 (Q9SGZ6) F28K19.26, partial (18%)         29  0.78
TC14882                                                                28  2.3
BP064136                                                               27  5.1
AV413362                                                               27  5.1
AU089498                                                               27  5.1
TC11005 similar to UP|O81909 (O81909) T7I23.15 protein, partial ...    26  6.6

>TC18793 similar to UP|O04035 (O04035) F7G19.18 protein, partial (54%)
          Length = 718

 Score =  341 bits (874), Expect = 9e-95
 Identities = 167/169 (98%), Positives = 168/169 (98%)
 Frame = +2

Query: 2   GVLPKRIILMRHGESQGNLDTSAYTTTPDHSIQLTPQGISQARRAGNRLRRVMAADGCSP 61
           GVLPKRIILMRHGESQGNLDTSAYTT P+HSIQLTPQGISQARRAGNRLRRVMAADGCSP
Sbjct: 212 GVLPKRIILMRHGESQGNLDTSAYTTKPNHSIQLTPQGISQARRAGNRLRRVMAADGCSP 391

Query: 62  DWRVNFYVSPYARTRSTLREVGRSFSKKRVIGVREESRIREQDFGNFQVEERMKIIKQTR 121
           DWRVNFYVSPYARTRSTLREVGRSFSKKRVIGVREESRIREQDFGNFQVEERMKIIKQTR
Sbjct: 392 DWRVNFYVSPYARTRSTLREVGRSFSKKRVIGVREESRIREQDFGNFQVEERMKIIKQTR 571

Query: 122 ERFGRFFYRFPEGESAADVYDRISGFFEALWRDIDLNRLHHDPSNDLNL 170
           ERFGRFFYRFPEGESAADVYDRISGFFEALWRDIDLNRLHHDPSNDLNL
Sbjct: 572 ERFGRFFYRFPEGESAADVYDRISGFFEALWRDIDLNRLHHDPSNDLNL 718


>TC17076 
          Length = 644

 Score =  131 bits (330), Expect = 1e-31
 Identities = 67/133 (50%), Positives = 89/133 (66%), Gaps = 2/133 (1%)
 Frame = +3

Query: 140 VYDRISGFFEALWRDIDLNRLHH--DPSNDLNLVIVSHGLTSRIFLMKWFKWTVEQFEHL 197
           VYDRI+GF E L  DI++ R     +   D+NLVIVSHGLT R+FLM+W+KWTVEQFE L
Sbjct: 3   VYDRITGFRETLRADINIGRYQPPGEEKMDINLVIVSHGLTLRVFLMRWYKWTVEQFEGL 182

Query: 198 NNFGNCEFRVMEQGSGGEYSLAVHHTEEEMLQWGLSPEMVADQKWRAGASRGAWNDQCSW 257
           +N  N E  VME+G GG YSL +HH E+E+ ++GL+ EM+ +Q+W   A     N  C  
Sbjct: 183 HNLRNAEMLVMEKGYGGRYSLLMHHDEQELRRFGLTDEMLIEQEWHKHARPADLNYDCP- 359

Query: 258 YLDGFFDRLAEES 270
            ++ FF  L EE+
Sbjct: 360 MVNSFFPHLNEEA 398


>TC11399 
          Length = 540

 Score =  107 bits (266), Expect = 3e-24
 Identities = 50/75 (66%), Positives = 60/75 (79%)
 Frame = +2

Query: 200 FGNCEFRVMEQGSGGEYSLAVHHTEEEMLQWGLSPEMVADQKWRAGASRGAWNDQCSWYL 259
           FGN EFRVM  GSGGEYS AVHHT+ EM +WGLSP+M+ADQKWRA A++GAW+DQ    L
Sbjct: 2   FGNGEFRVMHLGSGGEYSFAVHHTDREMHEWGLSPDMIADQKWRAHATKGAWHDQGPLSL 181

Query: 260 DGFFDRLAEESDDEE 274
           D FFD L  +SD+E+
Sbjct: 182 DTFFDHL-HDSDNED 223


>TC10071 
          Length = 530

 Score = 55.8 bits (133), Expect = 8e-09
 Identities = 25/46 (54%), Positives = 33/46 (71%)
 Frame = +1

Query: 5   PKRIILMRHGESQGNLDTSAYTTTPDHSIQLTPQGISQARRAGNRL 50
           P+RIIL+RHGES+GN+D + YT  PD  I LT +G +QA   G R+
Sbjct: 391 PRRIILVRHGESEGNVDETVYTRVPDPKIGLTDRGKAQAEECGYRI 528


>TC12667 similar to PIR|D96525|D96525 protein T1N15.19 [imported] -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (10%)
          Length = 498

 Score = 30.4 bits (67), Expect = 0.35
 Identities = 19/55 (34%), Positives = 26/55 (46%)
 Frame = -1

Query: 201 GNCEFRVMEQGSGGEYSLAVHHTEEEMLQWGLSPEMVADQKWRAGASRGAWNDQC 255
           G C+F     G GGE S AV   E E  +W    +    +KWR G+     ++QC
Sbjct: 291 GGCDFFGGGGGGGGEASAAV---EVEWWEW---EDGFEGEKWRVGSYGSRGSEQC 145


>TC10795 similar to UP|Q9SGZ6 (Q9SGZ6) F28K19.26, partial (18%)
          Length = 731

 Score = 29.3 bits (64), Expect = 0.78
 Identities = 17/46 (36%), Positives = 28/46 (59%)
 Frame = +2

Query: 8   IILMRHGESQGNLDTSAYTTTPDHSIQLTPQGISQARRAGNRLRRV 53
           +IL+RHGES  N + + +T   D  + L+ +GI +A  AG R+  +
Sbjct: 434 LILIRHGESLWN-EKNLFTGCVD--VPLSKKGIDEAIEAGKRISSI 562


>TC14882 
          Length = 578

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
 Frame = +2

Query: 141 YDRISGFFEALWRDIDLNRLHHDPSNDLNLVIVSHGLTSRIFLMKWF-KWTVE--QFEHL 197
           Y     FF+ L    +++ ++    +DLN V  S+G    +F+ +W  +W ++    E L
Sbjct: 155 YSLFEDFFKTLNAQQNIDFIYSGRQSDLNSVTASNG--PLVFVGEWVAEWKLDGGTKEEL 328

Query: 198 NNFGNCEFRVMEQGSGG----EYSLAVHHTEEEML 228
             F   +  V  Q + G     Y  +++H   E +
Sbjct: 329 QRFAKAQLDVFGQATFGWAYWSYKNSINHWSMEWM 433


>BP064136 
          Length = 461

 Score = 26.6 bits (57), Expect = 5.1
 Identities = 12/31 (38%), Positives = 19/31 (60%), Gaps = 4/31 (12%)
 Frame = +2

Query: 108 FQVEERMKIIKQTRERFGRFFY----RFPEG 134
           F+ + R++++K    RFGRFF+    R P G
Sbjct: 350 FRFQGRLQVLKYQISRFGRFFHLSSLRVPRG 442


>AV413362 
          Length = 405

 Score = 26.6 bits (57), Expect = 5.1
 Identities = 17/51 (33%), Positives = 23/51 (44%)
 Frame = +2

Query: 150 ALWRDIDLNRLHHDPSNDLNLVIVSHGLTSRIFLMKWFKWTVEQFEHLNNF 200
           +LW   DL   HH  +     + +SHG   R F    +K   + F  LNNF
Sbjct: 17  SLWNQPDLQ--HHTNT----AIPLSHGYCDRFFHWSIYKTPFQVF*QLNNF 151


>AU089498 
          Length = 438

 Score = 26.6 bits (57), Expect = 5.1
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +1

Query: 80  REVGRSFSKKRVIGVREESRIREQDFGNFQVEERMKI 116
           R++   F K+++  + +    +++DF   Q EER K+
Sbjct: 7   RDMQEEFFKEQIRVIHDSRNAKDEDFERMQQEEREKV 117


>TC11005 similar to UP|O81909 (O81909) T7I23.15 protein, partial (5%)
          Length = 567

 Score = 26.2 bits (56), Expect = 6.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 252 NDQCSWYLDGFFDRLAEESDDEEASSSC 279
           +D C+ +LD F  RL ++ + +E    C
Sbjct: 162 HDSCNLFLDNFLVRLCKQMEQDEGKVVC 79


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,041,018
Number of Sequences: 28460
Number of extensions: 67808
Number of successful extensions: 326
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of query: 280
length of database: 4,897,600
effective HSP length: 89
effective length of query: 191
effective length of database: 2,364,660
effective search space: 451650060
effective search space used: 451650060
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)