BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0211.11
(298 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8613 similar to GB|AAC64889.1|3776572|T22H22 ESTs gb|R65052, g... 528 e-155
TC8612 similar to GB|AAC64889.1|3776572|T22H22 ESTs gb|R65052, g... 183 3e-47
AV771788 68 2e-12
TC19794 similar to GB|AAO23575.1|27764908|BT003010 At5g60980/MSL... 44 3e-05
TC15714 weakly similar to UP|Q9LU96 (Q9LU96) Genomic DNA, chromo... 37 0.003
BI420244 34 0.026
TC11078 similar to UP|Q40451 (Q40451) DNA-binding protein, parti... 34 0.026
TC7812 UP|Q9LKJ6 (Q9LKJ6) Water-selective transport intrinsic me... 32 0.099
AV421117 31 0.22
TC18880 similar to UP|AAR83120 (AAR83120) Chloroplast carotenoid... 31 0.22
AV425247 30 0.49
TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycop... 30 0.49
TC9577 weakly similar to UP|ATPD_PEA (Q02758) ATP synthase delta... 30 0.49
TC13250 weakly similar to UP|Q7NJT5 (Q7NJT5) Glr1747 protein, pa... 30 0.49
TC14278 homologue to UP|O65760 (O65760) Extensin (Fragment), par... 30 0.49
TC10682 similar to PIR|A86408|A86408 FH protein interacting prot... 30 0.64
TC18562 homologue to UP|Q9FVA6 (Q9FVA6) Glu-tRNA(Gln) amidotrans... 30 0.64
TC14123 similar to UP|Q93X25 (Q93X25) 2-Cys peroxiredoxin, parti... 29 0.84
TC14463 similar to UP|Q9SLF1 (Q9SLF1) Nodulin-like protein (At2g... 29 0.84
TC10343 similar to UP|Q9SZZ1 (Q9SZZ1) Fibrillarin-like protein (... 29 0.84
>TC8613 similar to GB|AAC64889.1|3776572|T22H22 ESTs gb|R65052,
gb|AA712146, gb|H76533, gb|H76282, gb|AA650771,
gb|H76287, gb|AA650887, gb|N37383, gb|Z29721 and
gb|Z29722 come from this gene. {Arabidopsis thaliana;},
partial (68%)
Length = 939
Score = 528 bits (1359), Expect(2) = e-155
Identities = 270/270 (100%), Positives = 270/270 (100%)
Frame = +2
Query: 1 MGTIFPPHMTLPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSLKPSL 60
MGTIFPPHMTLPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSLKPSL
Sbjct: 59 MGTIFPPHMTLPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSLKPSL 238
Query: 61 ASSGTSWLSHAQQGLAALAITLALNFSPIFLSGNALASEFDVLNEVPAKDSYVVDDAGVL 120
ASSGTSWLSHAQQGLAALAITLALNFSPIFLSGNALASEFDVLNEVPAKDSYVVDDAGVL
Sbjct: 239 ASSGTSWLSHAQQGLAALAITLALNFSPIFLSGNALASEFDVLNEVPAKDSYVVDDAGVL 418
Query: 121 SRVTRSDLKGLLSDLESRKKFHINFITVRKLTSKADAFEYADQVLERWYPSVEEGNDKGI 180
SRVTRSDLKGLLSDLESRKKFHINFITVRKLTSKADAFEYADQVLERWYPSVEEGNDKGI
Sbjct: 419 SRVTRSDLKGLLSDLESRKKFHINFITVRKLTSKADAFEYADQVLERWYPSVEEGNDKGI 598
Query: 181 VVLVTSQKEGAVTGGPAFVQAVGENILDATVAENLPVLATDEKYNEAVLSTAKRLVAAID 240
VVLVTSQKEGAVTGGPAFVQAVGENILDATVAENLPVLATDEKYNEAVLSTAKRLVAAID
Sbjct: 599 VVLVTSQKEGAVTGGPAFVQAVGENILDATVAENLPVLATDEKYNEAVLSTAKRLVAAID 778
Query: 241 GLPDPGGPQVKDNKRESNFRTKEETEQKRG 270
GLPDPGGPQVKDNKRESNFRTKEETEQKRG
Sbjct: 779 GLPDPGGPQVKDNKRESNFRTKEETEQKRG 868
Score = 37.0 bits (84), Expect(2) = e-155
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = +1
Query: 272 FSLVVGGLLVVAFVVPML 289
FSLVVGGLLVVAFVVPML
Sbjct: 871 FSLVVGGLLVVAFVVPML 924
>TC8612 similar to GB|AAC64889.1|3776572|T22H22 ESTs gb|R65052,
gb|AA712146, gb|H76533, gb|H76282, gb|AA650771,
gb|H76287, gb|AA650887, gb|N37383, gb|Z29721 and
gb|Z29722 come from this gene. {Arabidopsis thaliana;},
partial (32%)
Length = 509
Score = 183 bits (464), Expect = 3e-47
Identities = 93/94 (98%), Positives = 93/94 (98%)
Frame = +1
Query: 205 NILDATVAENLPVLATDEKYNEAVLSTAKRLVAAIDGLPDPGGPQVKDNKRESNFRTKEE 264
NILDA VAENLPVLATDEKYNEAVLSTAKRLVAAIDGLPDPGGPQVKDNKRESNFRTKEE
Sbjct: 1 NILDAPVAENLPVLATDEKYNEAVLSTAKRLVAAIDGLPDPGGPQVKDNKRESNFRTKEE 180
Query: 265 TEQKRGQFSLVVGGLLVVAFVVPMLQYYAYVAKK 298
TEQKRGQFSLVVGGLLVVAFVVPMLQYYAYVAKK
Sbjct: 181 TEQKRGQFSLVVGGLLVVAFVVPMLQYYAYVAKK 282
>AV771788
Length = 338
Score = 67.8 bits (164), Expect = 2e-12
Identities = 32/45 (71%), Positives = 38/45 (84%)
Frame = -1
Query: 247 GPQVKDNKRESNFRTKEETEQKRGQFSLVVGGLLVVAFVVPMLQY 291
GPQ +D++ E NFRT+EET+ K G FSLV+GGLLVVAFVVPML Y
Sbjct: 338 GPQAQDSQPEFNFRTQEETDPKPGPFSLVIGGLLVVAFVVPMLPY 204
>TC19794 similar to GB|AAO23575.1|27764908|BT003010 At5g60980/MSL3_100
{Arabidopsis thaliana;}, partial (22%)
Length = 472
Score = 43.9 bits (102), Expect = 3e-05
Identities = 49/183 (26%), Positives = 73/183 (39%), Gaps = 2/183 (1%)
Frame = +1
Query: 20 SPTRLLLSPPSPL--PKSNSLFCSRPIISSLRKNQTLSLKPSLASSGTSWLSHAQQGLAA 77
S + LLS PSP+ P +SL S + SL + T S K + W Q L
Sbjct: 7 SASESLLSLPSPVHPPSQHSLLFSSLLSISLSLSLTSSTKQMATQEASPW--PLLQVLKW 180
Query: 78 LAITLALNFSPIFLSGNALASEFDVLNEVPAKDSYVVDDAGVLSRVTRSDLKGLLSDLES 137
LA+ L N ++ L FD + S ++RSD KG+++ + +
Sbjct: 181 LAMPLWSNIITFCINPRDLVHRFDQES----------------SFLSRSDSKGVMTTVTT 312
Query: 138 RKKFHINFITVRKLTSKADAFEYADQVLERWYPSVEEGNDKGIVVLVTSQKEGAVTGGPA 197
K + N I++ Y D E +E +KG++VLVT G G
Sbjct: 313 TKAINENIISLN----------YEDYTAEIKTADAQESYEKGVIVLVTGCLTGKDNVGRK 462
Query: 198 FVQ 200
F Q
Sbjct: 463 FSQ 471
>TC15714 weakly similar to UP|Q9LU96 (Q9LU96) Genomic DNA, chromosome 3, P1
clone: MPE11, partial (26%)
Length = 1157
Score = 37.4 bits (85), Expect = 0.003
Identities = 26/72 (36%), Positives = 36/72 (49%), Gaps = 7/72 (9%)
Frame = +2
Query: 7 PHMTLPPLSSIKPSPTRLLLSPP-SPLPKSNSLFCSRPIISSLRKNQTLSLKPSLASSG- 64
P T PP SS P++ +SPP +P ++ SL + P S + +LSL P SS
Sbjct: 317 PSSTAPPPSSSASPPSQTPVSPPPTPRSRTPSLISAPPTSSPICYTTSLSLPPPTRSSSR 496
Query: 65 -----TSWLSHA 71
+SWLS A
Sbjct: 497 TTSPRSSWLSRA 532
>BI420244
Length = 571
Score = 34.3 bits (77), Expect = 0.026
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Frame = +1
Query: 11 LPPLSSI--KPSPTRLLLSPPSPLPKSNSLFCSRP-----IISSLRKNQTLSLKPSLAS- 62
LPP S P P R +PP+P P S++ CS P ++ S R L P LA
Sbjct: 217 LPPNSPCLTSPLPRRAATTPPAPTPLSSAPLCSVPMPPASLLLSRRTRGRLRRCPCLAGI 396
Query: 63 -SGTSW 67
SGT W
Sbjct: 397 FSGTRW 414
>TC11078 similar to UP|Q40451 (Q40451) DNA-binding protein, partial (16%)
Length = 507
Score = 34.3 bits (77), Expect = 0.026
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Frame = +1
Query: 13 PLSSIKPSPTRLLLSPPSPLPKSN------SLFCSRPIISSLRKNQTLSLKPSLASSGTS 66
P +S KP+PT L +PPS L S+ S CSR + SSL + SL+ L+ SG
Sbjct: 274 PSTSRKPTPTFHLHTPPS*LTTSSA*RTLVSSSCSRNLTSSLLLSLPTSLRMLLSLSGED 453
Query: 67 WLSHAQ--QGLAAL 78
L + +G AAL
Sbjct: 454 ALPDLEFLRGAAAL 495
>TC7812 UP|Q9LKJ6 (Q9LKJ6) Water-selective transport intrinsic membrane
protein 1, complete
Length = 1149
Score = 32.3 bits (72), Expect = 0.099
Identities = 24/58 (41%), Positives = 27/58 (46%)
Frame = +1
Query: 12 PPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSLKPSLASSGTSWLS 69
PP SS PSPT S PSP ++ S P S + S PS A S TS LS
Sbjct: 238 PPASSPPPSPTHSPSSSPSPSAPTSPAATSTPPSPSASSSAVTS--PSSAVSSTSSLS 405
>AV421117
Length = 400
Score = 31.2 bits (69), Expect = 0.22
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Frame = -2
Query: 50 KNQTLSLKPSLASSGT--SWLSHAQQGLAALAITLALNFSPIFL---SGNALASEFDVLN 104
+ Q L LK S+ S+ + SW +GLA+L+I+++L+ S +FL SG+ LA+ V+
Sbjct: 291 RTQKLGLKASMFSTTSF*SW-----RGLASLSISMSLSISTVFLKASSGS*LAAHIKVVL 127
Query: 105 EVPAKDSYVVDDAGVL 120
+ K + V + G+L
Sbjct: 126 LLKFK*NGVRIELGLL 79
>TC18880 similar to UP|AAR83120 (AAR83120) Chloroplast carotenoid
epsilon-ring hydroxylase, partial (27%)
Length = 699
Score = 31.2 bits (69), Expect = 0.22
Identities = 23/75 (30%), Positives = 30/75 (39%)
Frame = +1
Query: 3 TIFPPHMTLPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSLKPSLAS 62
++FPPH T P + KP P L + SS+ KN S KPS
Sbjct: 154 SLFPPHKTTPSPPTRKPYPLHTL-----------------SVKSSINKNSETSTKPSSWV 282
Query: 63 SGTSWLSHAQQGLAA 77
S WL+ + L A
Sbjct: 283 S-PDWLTSLSRSLTA 324
>AV425247
Length = 417
Score = 30.0 bits (66), Expect = 0.49
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = +3
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPSPLP 33
PP TL P S PSP+ LLL P PLP
Sbjct: 204 PPQSTLSP--SPSPSPSPLLLPPTLPLP 281
>TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycoprotein
(HRGP) (Fragment), partial (57%)
Length = 941
Score = 30.0 bits (66), Expect = 0.49
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPSP 31
P H T PP S P+PT + SPP P
Sbjct: 511 PYHYTSPPPPSPSPAPTYIYKSPPPP 588
Score = 28.5 bits (62), Expect = 1.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPSPL 32
P H PP S P+PT + SPP P+
Sbjct: 415 PYHYASPPPPSPSPAPTYIYKSPPPPV 495
>TC9577 weakly similar to UP|ATPD_PEA (Q02758) ATP synthase delta chain,
chloroplast precursor , partial (54%)
Length = 627
Score = 30.0 bits (66), Expect = 0.49
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +3
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSLKPSLASSGT 65
PP PP S P+PT +PP P +S+ P S++ Q + K S +SS T
Sbjct: 264 PPPPATPPHSPTSPAPTN-PSTPPPPTWRSSRRSFLTPRCSTISPTQPSASKTSASSSTT 440
>TC13250 weakly similar to UP|Q7NJT5 (Q7NJT5) Glr1747 protein, partial (13%)
Length = 575
Score = 30.0 bits (66), Expect = 0.49
Identities = 27/64 (42%), Positives = 33/64 (51%)
Frame = +1
Query: 4 IFPPHMTLPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSLKPSLASS 63
I PP LP SS SPT L SPPSP+ S+S +S R + SL P L SS
Sbjct: 295 ISPPFHRLPR-SSTATSPTFPLSSPPSPVAPSSS--------TSPRSSSPGSLIP-L*SS 444
Query: 64 GTSW 67
++W
Sbjct: 445 PSTW 456
>TC14278 homologue to UP|O65760 (O65760) Extensin (Fragment), partial
(28%)
Length = 619
Score = 30.0 bits (66), Expect = 0.49
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPSP 31
P H T PP S P+PT + SPP P
Sbjct: 29 PYHYTSPPPPSPSPAPTYIYKSPPPP 106
>TC10682 similar to PIR|A86408|A86408 FH protein interacting protein FIP1
[imported] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (36%)
Length = 577
Score = 29.6 bits (65), Expect = 0.64
Identities = 15/32 (46%), Positives = 18/32 (55%)
Frame = +3
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPSPLPKSNS 37
PP LPPL P+P L+L+P S L NS
Sbjct: 180 PPPPPLPPLPPPPPNPMTLILTPLSTLLTPNS 275
>TC18562 homologue to UP|Q9FVA6 (Q9FVA6) Glu-tRNA(Gln) amidotransferase
subunit A, partial (4%)
Length = 239
Score = 29.6 bits (65), Expect = 0.64
Identities = 16/31 (51%), Positives = 18/31 (57%)
Frame = +3
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPSPLPKSN 36
PP +LPPLS PSPT PP PL + N
Sbjct: 129 PPSTSLPPLSLKLPSPT-TNPQPPPPLHRRN 218
>TC14123 similar to UP|Q93X25 (Q93X25) 2-Cys peroxiredoxin, partial (89%)
Length = 1130
Score = 29.3 bits (64), Expect = 0.84
Identities = 14/31 (45%), Positives = 18/31 (57%)
Frame = +3
Query: 3 TIFPPHMTLPPLSSIKPSPTRLLLSPPSPLP 33
T+ P + PP + PSPT LSPP+P P
Sbjct: 99 TLHPSSLPNPP--PLSPSPTPSTLSPPNPSP 185
>TC14463 similar to UP|Q9SLF1 (Q9SLF1) Nodulin-like protein
(At2g16660/T24I21.7), partial (40%)
Length = 1122
Score = 29.3 bits (64), Expect = 0.84
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 7 PHMTLPPLSSIKPSPTRLLLSPPSPLP 33
PH + PP+S P P PP PLP
Sbjct: 1090 PHSSSPPISCAPPPPPAAPSPPPLPLP 1010
Score = 26.2 bits (56), Expect = 7.1
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -3
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPSPLPKS 35
PP PP PSP L L PP P+S
Sbjct: 1075 PPISCAPPPPPAAPSPPPLPLPPPPSPPRS 986
>TC10343 similar to UP|Q9SZZ1 (Q9SZZ1) Fibrillarin-like protein (Fibrillarin
2) (AtFib2), partial (85%)
Length = 1116
Score = 29.3 bits (64), Expect = 0.84
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPSPLP 33
PP LPP ++K P L PPSPLP
Sbjct: 179 PPPPPLPPPRALKGVPLPPPLPPPSPLP 96
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.315 0.133 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,711,514
Number of Sequences: 28460
Number of extensions: 73733
Number of successful extensions: 900
Number of sequences better than 10.0: 136
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of query: 298
length of database: 4,897,600
effective HSP length: 90
effective length of query: 208
effective length of database: 2,336,200
effective search space: 485929600
effective search space used: 485929600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0211.11