BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0207.9
(758 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18710 177 4e-45
TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, p... 70 1e-12
AV780705 65 4e-11
TC12829 55 5e-08
TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%) 40 0.001
TC12836 GB|CAA71302.1|2292921|LJPANC pantoate--beta-alanine liga... 37 0.009
TC13685 similar to UP|Q9FJH5 (Q9FJH5) Gb|AAC98457.1 (At5g60800),... 29 2.4
AV778644 28 4.2
BI420650 28 4.2
TC8300 UP|AAQ87020 (AAQ87020) VDAC1.2, complete 28 5.4
AV408994 28 7.1
TC8574 weakly similar to UP|Q9M0F5 (Q9M0F5) Acid phosphatase-lik... 28 7.1
>TC18710
Length = 843
Score = 177 bits (450), Expect = 4e-45
Identities = 108/272 (39%), Positives = 144/272 (52%)
Frame = +2
Query: 266 FSTLFTTSNPMGIEAATSLVANRLNKGHLAILNTPFSGEKVREPLFQMHPTKASGLDGLH 325
F L+T++ P E+A L K + LN +K+R F + ++ G+DG++
Sbjct: 26 FPELYTSTPPNSSESA*MLFLP*SLKI*IKSLNLR*LQKKLRLLFFLLETSQPRGMDGMN 205
Query: 326 TLFYQKFWHIVGDDVAHFCLSVLQGRVSPGTIIPTLLVLIPKIKKSVHATHFRPISLCNV 385
LFYQK +V D V L+ L+ P I TL+ LIPK+ FRPIS C
Sbjct: 206 GLFYQKNGDVVKDSVT*AILAFLERAEIPNEINETLVTLIPKVPHPESINQFRPISGCTF 385
Query: 386 PFKIIT*TLANKLKIVLPDIISGPQSAFVPGRLVTDNALVAYECFHFMKKKIYGCNGIMA 445
+K+I+ +LK +PD+IS QS F+ GR + DN L+ E FH + +
Sbjct: 386 LYKVISKIFVARLKDAMPDLISPMQSGFIQGRQIQDNLLIVQEAFHAINRPGALGRNHSI 565
Query: 446 LKLDMSKAYDRVEWPFLRSALEKMGFPVNWVSFIMDYVTTVLFQVMLNGNPQVPFDPGRG 505
+KLDM+KAYDRVEW FL S+L GF NWV IM V+ V + +NG P RG
Sbjct: 566 IKLDMNKAYDRVEWKFLESSLLAFGFSTNWVKMIMILVSGVSYNYKINGVVGPKLLPQRG 745
Query: 506 LRQGDPLSPYLFLICGEVFSALIQRKIGASHL 537
LRQGDP SPYLFL EV S LIQ +L
Sbjct: 746 LRQGDPFSPYLFLFTMEVLSLLIQNSFNMGNL 841
>TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, partial
(14%)
Length = 592
Score = 70.1 bits (170), Expect = 1e-12
Identities = 44/124 (35%), Positives = 70/124 (55%)
Frame = -3
Query: 284 LVANRLNKGHLAILNTPFSGEKVREPLFQMHPTKASGLDGLHTLFYQKFWHIVGDDVAHF 343
LV +RLN A ++T ++++E +F M KA G+DG++ LFYQ+ IV +DV +
Sbjct: 368 LVTDRLNHKLCAQVST----DEIKEAVFSMGDLKAPGMDGINGLFYQQNREIVKNDVNNA 201
Query: 344 CLSVLQGRVSPGTIIPTLLVLIPKIKKSVHATHFRPISLCNVPFKIIT*TLANKLKIVLP 403
L P + TL+ LIPKI + FRPIS C+ +K+I+ + +LK +
Sbjct: 200 ILDFFDHGELPVELNETLVTLIPKIPHAEAIQQFRPISCCSFIYKVISKIIVARLKPDMV 21
Query: 404 DIIS 407
++IS
Sbjct: 20 NLIS 9
>AV780705
Length = 524
Score = 65.1 bits (157), Expect = 4e-11
Identities = 33/78 (42%), Positives = 50/78 (63%)
Frame = -2
Query: 613 LLGVKAMDNYDRYLGLPTIIGKSKTQIFRFVKERDWKKLKGRKEPSLSRAGREVLIKAVA 672
LL + D+ YLGLP I G++K+ +++E+ +KL+G KE L++AG+EVLIKA+
Sbjct: 520 LLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAII 341
Query: 673 QEIPAYIMSCFILPDNLC 690
Q IP+Y M+ P C
Sbjct: 340 QAIPSYAMTIVHFPKTFC 287
>TC12829
Length = 448
Score = 54.7 bits (130), Expect = 5e-08
Identities = 25/41 (60%), Positives = 31/41 (74%)
Frame = +3
Query: 656 EPSLSRAGREVLIKAVAQEIPAYIMSCFILPDNLCADSTGV 696
E L RAGREVLIK+V + IP YIMSCF LPD++C+ G+
Sbjct: 252 EKFLYRAGREVLIKSVTKAIPTYIMSCFALPDSICSQIEGM 374
>TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%)
Length = 912
Score = 40.0 bits (92), Expect = 0.001
Identities = 35/121 (28%), Positives = 56/121 (45%)
Frame = -3
Query: 551 ISHLLFADDNVIFARATREEASCVKGILAEYDKVYVQVINFDKSMLSYSRNVPSLYFNEL 610
ISHL FAD+ ++F+ E + + +L + + N KS + V N++
Sbjct: 373 ISHLCFADNLMVFSNGYLESIAIINNVLHIFQHLSGLTPNPAKSEVFIL--VKETTKNQI 200
Query: 611 KMLLGVKAMDNYDRYLGLPTIIGKSKTQIFRFVKERDWKKLKGRKEPSLSRAGREVLIKA 670
+LG K R LG+P + K K + + +R KL+ SLS AGR LI +
Sbjct: 199 TNMLGYKEGKLPVR*LGVPQLTTKLKASDCKVLVDRKPSKLQHWTGRSLSYAGRLQLINS 20
Query: 671 V 671
+
Sbjct: 19 I 17
>TC12836 GB|CAA71302.1|2292921|LJPANC pantoate--beta-alanine ligase {Lotus
corniculatus var. japonicus;} , complete
Length = 1310
Score = 37.4 bits (85), Expect = 0.009
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +1
Query: 554 LLFADDNVIFARATREEASCVKGILAEYDKVYVQVINFDKSMLS 597
LLF D +IF RAT E + ++ IL Y +IN DKS LS
Sbjct: 1102 LLFVGDGIIFCRATTPEENKIREILLMYQSAPGLLINLDKSELS 1233
>TC13685 similar to UP|Q9FJH5 (Q9FJH5) Gb|AAC98457.1 (At5g60800), partial
(37%)
Length = 585
Score = 29.3 bits (64), Expect = 2.4
Identities = 21/64 (32%), Positives = 32/64 (49%)
Frame = -2
Query: 172 KINFRNCSRGSRQRRWWPKLTWLRHNLIHFLFRKKSRGASDPRHLGFNMEIRIQNSFIRK 231
K N RN R SR R WW +L++ H FR++ G+S + +E R + ++
Sbjct: 227 KRNPRNACRLSRPRWWWCRLSFR-----HRGFRRRRYGSSSRPLIVVTLETRKEKE--KR 69
Query: 232 RPSG 235
R SG
Sbjct: 68 RKSG 57
>AV778644
Length = 396
Score = 28.5 bits (62), Expect = 4.2
Identities = 22/78 (28%), Positives = 34/78 (43%)
Frame = -2
Query: 174 NFRNCSRGSRQRRWWPKLTWLRHNLIHFLFRKKSRGASDPRHLGFNMEIRIQNSFIRKRP 233
+F +C+ +R+RRWWP F F+ + A D R N E + + R
Sbjct: 191 HFPDCATFARERRWWP---------ARFEFKLSTFEARDRREREGNRERK------KNRK 57
Query: 234 SGRNVI*LMSFGMMRAED 251
+ *LM+ +MR D
Sbjct: 56 QRQGCG*LMNVSVMRE*D 3
>BI420650
Length = 576
Score = 28.5 bits (62), Expect = 4.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 461 FLRSALEKMGFPVNWVSFIMDYVTTVLFQVMLNGNPQVPF 500
F SAL+ MGF N VS ++ ++ + F + + N F
Sbjct: 136 FALSALDNMGFVANMVSLVLYFIMVMHFDLASSANTLTNF 255
>TC8300 UP|AAQ87020 (AAQ87020) VDAC1.2, complete
Length = 1293
Score = 28.1 bits (61), Expect = 5.4
Identities = 10/17 (58%), Positives = 13/17 (75%)
Frame = +2
Query: 118 RFGSKLVRNVQKLWQRH 134
RFGS+ +RN + LWQ H
Sbjct: 896 RFGSQTLRNFEPLWQEH 946
>AV408994
Length = 410
Score = 27.7 bits (60), Expect = 7.1
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +2
Query: 71 IARPLFG-HWWRSSTFPGFTQIILQLLSLV 99
I + FG HWW S F F ++L +L LV
Sbjct: 50 ILQQWFGIHWWNSREFAMFVTLVLVMLPLV 139
>TC8574 weakly similar to UP|Q9M0F5 (Q9M0F5) Acid phosphatase-like protein,
partial (58%)
Length = 1280
Score = 27.7 bits (60), Expect = 7.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 630 TIIGKSKTQIFRFVKERDWKKLKGRKEPSLSRAGRE 665
T+ +K + F+KE DW L K P+ + GRE
Sbjct: 758 TVF*TAKPNVLYFLKENDW*TLTYCKHPTDTEKGRE 865
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.334 0.146 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,134,676
Number of Sequences: 28460
Number of extensions: 182505
Number of successful extensions: 1459
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1457
length of query: 758
length of database: 4,897,600
effective HSP length: 97
effective length of query: 661
effective length of database: 2,136,980
effective search space: 1412543780
effective search space used: 1412543780
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0207.9