BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0207.8
(258 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycop... 38 0.002
TC9527 similar to GB|AAB04607.1|1448917|ATHTHSY threonine syntha... 35 0.010
TC14454 similar to UP|O04133 (O04133) SRC2, partial (88%) 34 0.022
TC8260 similar to UP|Q94ES8 (Q94ES8) Nodule extensin (Fragment),... 34 0.022
TC14294 similar to UP|Q9FYE4 (Q9FYE4) EF-hand calcium binding pr... 33 0.049
TC17395 similar to UP|Q9LN83 (Q9LN83) T12C24.17, partial (37%) 32 0.083
AV419283 31 0.18
TC17622 weakly similar to UP|P93837 (P93837) Amp-binding protein... 31 0.24
TC14293 similar to UP|Q9FYE4 (Q9FYE4) EF-hand calcium binding pr... 31 0.24
TC13980 similar to UP|Q9SGT0 (Q9SGT0) T6H22.18 protein (F14J16.3... 31 0.24
BP078507 31 0.24
BP044699 30 0.41
TC14693 similar to GB|BAB01116.1|11994113|AB026658 CND41, chloro... 30 0.41
AU251550 30 0.54
TC17867 similar to GB|AAM26654.1|20856224|AY101533 At1g14810/F10... 30 0.54
TC7889 similar to UP|Q40336 (Q40336) Proline-rich cell wall prot... 30 0.54
TC7812 UP|Q9LKJ6 (Q9LKJ6) Water-selective transport intrinsic me... 29 0.92
TC16018 UP|Q8MZB8 (Q8MZB8) AT15479p (CG31542-PA), partial (7%) 29 0.92
TC16424 similar to UP|Q9FZF1 (Q9FZF1) T2E6.18, partial (39%) 28 1.2
AV408622 28 1.2
>TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycoprotein
(HRGP) (Fragment), partial (57%)
Length = 941
Score = 37.7 bits (86), Expect = 0.002
Identities = 43/171 (25%), Positives = 57/171 (33%), Gaps = 10/171 (5%)
Frame = +1
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAP-FVDSDEPAYGVPPNPVHYPVHPRSYGYD 70
YY P P S P + PP + P + S P PP P +Y P
Sbjct: 85 YYKSPPPPSPSPPPPYYYQSPPPPSHSPPPPYYYKSPPPPSPSPPPPYYYKSPP------ 246
Query: 71 FFPESDSVSKPYGY------SGLASEDSFWYDQWPPTSSKP---SLAEPQPCFPDLNSMG 121
P S S PY Y S + ++ PPTSS P P P P
Sbjct: 247 --PPSPSPPPPYYYKSPPPPSPIPHPPYYYKSPPPPTSSPPPPYHYVSPPPPSP------ 402
Query: 122 LASEDSFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIHWSS 172
+ + Y S P+ P+YI + P P P H++S
Sbjct: 403 -SPPPPYHYASPPPPSPSPA--------PTYIYKSPPPPVKLPPPPYHYTS 528
Score = 33.5 bits (75), Expect = 0.037
Identities = 40/160 (25%), Positives = 54/160 (33%), Gaps = 2/160 (1%)
Frame = +1
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAP--FVDSDEPAYGVPPNPVHYPVHPRSYGY 69
YY P P S SP + + PP + + P + S P PP P HY P
Sbjct: 229 YYKSPPPPSP-SPPPPYYYKSPPPPSPIPHPPYYYKSPPPPTSSPPPPYHYVSPP----- 390
Query: 70 DFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSMGLASEDSFG 129
P S S PY Y+ PP S P+ P + +
Sbjct: 391 ---PPSPSPPPPYHYASP-----------PPPSPSPA---PTYIYKSPPPPVKLPPPPYH 519
Query: 130 YEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIH 169
Y S P+ P+YI + P PT S P++
Sbjct: 520 YTSPPPPSPSPA--------PTYIYKSPPPPTKSPPPPVY 615
>TC9527 similar to GB|AAB04607.1|1448917|ATHTHSY threonine synthase
{Arabidopsis thaliana;} , partial (23%)
Length = 544
Score = 35.4 bits (80), Expect = 0.010
Identities = 23/59 (38%), Positives = 26/59 (43%)
Frame = -1
Query: 54 PPNPVHYPVHPRSYGYDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQP 112
PP P H P PRS+ P SKP Y+G + S PPT S PS P P
Sbjct: 232 PPPPYHPPQSPRSFSASSVP-----SKPPQYAGK*TSQSN-----PPTPSHPSAPPPSP 86
>TC14454 similar to UP|O04133 (O04133) SRC2, partial (88%)
Length = 1190
Score = 34.3 bits (77), Expect = 0.022
Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 9/81 (11%)
Frame = +1
Query: 13 YSPPQPHSTLSPY----AAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYG 68
Y PP S+ PY A + P + +P YG PP Y P+ G
Sbjct: 661 YPPPVAGSSSVPYGTPQAPGYGYPPPAYGAQPGHGYPPQQPGYGYPPQQAGYGYPPQQPG 840
Query: 69 YDFFPESDSVSKP-----YGY 84
Y + P+ P YGY
Sbjct: 841 YGYPPQQAGYGYPPQQAGYGY 903
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/62 (29%), Positives = 23/62 (37%)
Frame = +1
Query: 13 YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDFF 72
Y P QP P A + PP +P YG PP Y P+ GY +
Sbjct: 766 YPPQQPGYGYPPQQAGYGY--PP-----------QQPGYGYPPQQAGYGYPPQQAGYGYP 906
Query: 73 PE 74
P+
Sbjct: 907 PQ 912
>TC8260 similar to UP|Q94ES8 (Q94ES8) Nodule extensin (Fragment), partial
(79%)
Length = 1017
Score = 34.3 bits (77), Expect = 0.022
Identities = 25/79 (31%), Positives = 31/79 (38%)
Frame = +3
Query: 6 SYNDWGYYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPR 65
S N + Y SPP P S ++ V+ PP P + P Y PP P P HP
Sbjct: 96 SANHYAYSSPPPPPKPYSYHSPPPPVHSPP------PPYEKPHPVYHSPPPPYEKP-HPV 254
Query: 66 SYGYDFFPESDSVSKPYGY 84
+ P KPY Y
Sbjct: 255 YHS----PPPPPPHKPYKY 299
Score = 33.9 bits (76), Expect = 0.029
Identities = 27/86 (31%), Positives = 32/86 (36%), Gaps = 10/86 (11%)
Frame = +3
Query: 10 WGYYSPPQP-HSTLSPYAAAFSV--NRPPFNDVSAPFVDSDEP-------AYGVPPNPVH 59
+ Y+SPP P HS PY V + PP + P S P Y PP P H
Sbjct: 144 YSYHSPPPPVHSPPPPYEKPHPVYHSPPPPYEKPHPVYHSPPPPPPHKPYKYPSPPPPPH 323
Query: 60 YPVHPRSYGYDFFPESDSVSKPYGYS 85
HP + P K Y YS
Sbjct: 324 KYPHPHPHPVYHSPPPPPPKKHYKYS 401
Score = 33.5 bits (75), Expect = 0.037
Identities = 21/56 (37%), Positives = 23/56 (40%)
Frame = +3
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSY 67
Y+SPP P PY A + PP P P Y PP PVH P P Y
Sbjct: 498 YHSPPPPPPHEKPYKYA---SPPP-----PPVHTYPHPVYHSPPPPVHSPPPPHYY 641
Score = 33.1 bits (74), Expect = 0.049
Identities = 29/101 (28%), Positives = 35/101 (33%)
Frame = +3
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDF 71
Y+SPP P P + + PP + P P Y PP PVH HP Y
Sbjct: 354 YHSPPPP-----PPKKHYKYSSPPPPVHTYPH---PHPVYHSPPPPVHTYPHPHPV-YHS 506
Query: 72 FPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQP 112
P KPY Y+ Y S P + P P
Sbjct: 507 PPPPPPHEKPYKYASPPPPPVHTYPHPVYHSPPPPVHSPPP 629
>TC14294 similar to UP|Q9FYE4 (Q9FYE4) EF-hand calcium binding protein-like
(At5g04170), partial (65%)
Length = 1192
Score = 33.1 bits (74), Expect = 0.049
Identities = 48/175 (27%), Positives = 57/175 (32%), Gaps = 4/175 (2%)
Frame = +1
Query: 10 WGYYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGY 69
+GY +PP PY AA PP A +YG PP P Y P S Y
Sbjct: 91 YGYGAPPP----YQPYGAA-----PPSQPYGAA---PPSQSYGAPPPPQPYGAAPPSQPY 234
Query: 70 DFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEP--QPCFPDLNSMGLASEDS 127
P S S Y G PP S+P A P QP P +D
Sbjct: 235 GAPPPSQS------YGG------------PPPPSQPYSASPYGQPSAPYAAPYQKPPKDE 360
Query: 128 FGYEQWLSASSKPSLGEAQ-PYFPSYIPSTIPSPTS-SVAAPIHWSSSSGFAPLD 180
S P A F S +PS P T S+ A + G +D
Sbjct: 361 SHSHGGGGGSGYPPPPSAYGSPFASLVPSVFPPGTDPSIVACFQVADQDGSGLID 525
>TC17395 similar to UP|Q9LN83 (Q9LN83) T12C24.17, partial (37%)
Length = 570
Score = 32.3 bits (72), Expect = 0.083
Identities = 35/114 (30%), Positives = 47/114 (40%), Gaps = 2/114 (1%)
Frame = +3
Query: 92 SFWYDQWPPTSSKPSLAEPQPCFPDLNSMGLASEDSFGYEQWLSASSKPSLGEAQPYFPS 151
SF WP S+ PS + ++ S + SASS S A P S
Sbjct: 48 SFTLIPWPHPSASPSPS--------------SASSSASSPPFRSASSGASSPVASPSTSS 185
Query: 152 YIPSTIPSPTSSVAAPIHWSSSSGFAPLDVVPSF--GDYAAENSSEFGFSGLGA 203
PS SPTS A+P +SSS + + + SF D A+ SS + L A
Sbjct: 186 PPPSVFSSPTSPSASPPISTSSSPCSSVTLPCSFTAPDAASSRSSSVSATSLPA 347
Score = 26.2 bits (56), Expect = 5.9
Identities = 18/63 (28%), Positives = 29/63 (45%), Gaps = 11/63 (17%)
Frame = +3
Query: 10 WGYYSPPQPHSTLSPY--AAAFSVNRPPF--------NDVSAPFVDSDEPA-YGVPPNPV 58
W + P PH + SP +A+ S + PPF + V++P S P+ + P +P
Sbjct: 45 WSFTLIPWPHPSASPSPSSASSSASSPPFRSASSGASSPVASPSTSSPPPSVFSSPTSPS 224
Query: 59 HYP 61
P
Sbjct: 225 ASP 233
>AV419283
Length = 155
Score = 31.2 bits (69), Expect = 0.18
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -3
Query: 150 PSYIPSTIPSPTSSVAAPIH 169
PS +PST P P +S+A+P+H
Sbjct: 84 PSLLPSTFPLPLASIASPLH 25
>TC17622 weakly similar to UP|P93837 (P93837) Amp-binding protein, partial
(24%)
Length = 461
Score = 30.8 bits (68), Expect = 0.24
Identities = 30/85 (35%), Positives = 41/85 (47%), Gaps = 5/85 (5%)
Frame = +3
Query: 99 PPTSSKPSLA----EPQPCFPDLNS-MGLASEDSFGYEQWLSASSKPSLGEAQPYFPSYI 153
PPT P LA P FP L S + ++S S ++S+ PS A PS
Sbjct: 168 PPTLG-PKLAAAAYSSPPLFPPLESAVAMSSPLSLLTSLPCTSSTSPSPSPALSSTPS-T 341
Query: 154 PSTIPSPTSSVAAPIHWSSSSGFAP 178
P+ P+P+ S +A + SSSS AP
Sbjct: 342 PALTPAPSPSSSATPNPSSSSSIAP 416
>TC14293 similar to UP|Q9FYE4 (Q9FYE4) EF-hand calcium binding protein-like
(At5g04170), partial (18%)
Length = 540
Score = 30.8 bits (68), Expect = 0.24
Identities = 47/175 (26%), Positives = 56/175 (31%), Gaps = 4/175 (2%)
Frame = +2
Query: 10 WGYYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGY 69
+GY +PP PY AA PP +YG PP P Y P S Y
Sbjct: 131 YGYGAPPP----YQPYGAA-----PP------------SQSYGAPPPPQPYGAAPPSQPY 247
Query: 70 DFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEP--QPCFPDLNSMGLASEDS 127
P S S Y G PP S+P A P QP P +D
Sbjct: 248 GAPPPSQS------YGG------------PPPPSQPYSASPYGQPSAPYAAPYQKPPKDE 373
Query: 128 FGYEQWLSASSKPSLGEAQ-PYFPSYIPSTIPSPTS-SVAAPIHWSSSSGFAPLD 180
S P A F S +PS P T S+ A + G +D
Sbjct: 374 SHSHGGGGGSGYPPPPSAYGSPFASLVPSVFPPGTDPSIVACFQVADQDGSGLID 538
>TC13980 similar to UP|Q9SGT0 (Q9SGT0) T6H22.18 protein (F14J16.33), partial
(12%)
Length = 565
Score = 30.8 bits (68), Expect = 0.24
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +2
Query: 99 PPTSSKPSLAEPQPCFPDLNSMGLASEDSFGYEQWLSASSKPSLG-EAQPYFPSYIPSTI 157
PPTSS S P PC P +S S S S+ P + QP+ P P
Sbjct: 296 PPTSSSASKT-PSPCSPPTSSSPTGSSSH-------STSNPPHPPPQQQPFSPPPPPPPP 451
Query: 158 PSPTSSVAAP 167
PSPT+ + P
Sbjct: 452 PSPTAPSSHP 481
>BP078507
Length = 414
Score = 30.8 bits (68), Expect = 0.24
Identities = 27/83 (32%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Frame = -1
Query: 13 YSP-PQPHSTLSPYAAAFSVNRPPFNDVSAP-----FVDSDEPAYGVPPNPVHYPVHPRS 66
+SP P P++ SPY A S RPP + P SD P+ PP P P
Sbjct: 276 HSPQPSPNAPTSPYPAPSSQLRPPPSTSHQPPPTLLQPTSDTPSPSPPPPSSPNPPPPHH 97
Query: 67 YGYDFFPESDSVSKPYGYSGLAS 89
P S S S P G S
Sbjct: 96 SPNPPHPPSSSPSPPQSSQGQRS 28
>BP044699
Length = 522
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/63 (33%), Positives = 26/63 (40%), Gaps = 2/63 (3%)
Frame = -3
Query: 55 PNPVHYPVHPRSYGYDFFPESDS--VSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQP 112
PN H P G D P SDS P + D W+ Q +SS P ++EP P
Sbjct: 433 PNLSHLP-----NGADHLPYSDSNPPKNPLSPFVCITRDGRWFSQISGSSSSPCISEPLP 269
Query: 113 CFP 115
P
Sbjct: 268 PDP 260
>TC14693 similar to GB|BAB01116.1|11994113|AB026658 CND41, chloroplast
nucleoid DNA binding protein-like {Arabidopsis
thaliana;} , partial (58%)
Length = 2067
Score = 30.0 bits (66), Expect = 0.41
Identities = 22/58 (37%), Positives = 27/58 (45%)
Frame = +1
Query: 127 SFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIHWSSSSGFAPLDVVPS 184
SF + A ++P L F + S P TS+ A PIH SS S A LDV S
Sbjct: 1 SFSELETKMAPNQPFLVLTFTLFITITLSLAPPTTSTRATPIHGSSESSTAVLDVSSS 174
>AU251550
Length = 329
Score = 29.6 bits (65), Expect = 0.54
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +2
Query: 11 GYYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNP 57
GYY+PP P PYA A PPF P P +G PP+P
Sbjct: 122 GYYNPPPPGPPRDPYAPA--PPPPPFGHHHPP------PPHG-PPSP 235
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/46 (32%), Positives = 18/46 (38%)
Frame = +2
Query: 10 WGYYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPP 55
+G++ PP PH SP A PP P P G PP
Sbjct: 191 FGHHHPPPPHGPPSPPPPAMFYQPPPPPGPPGPPQPPHPPGPGPPP 328
>TC17867 similar to GB|AAM26654.1|20856224|AY101533 At1g14810/F10B6_6
{Arabidopsis thaliana;}, partial (13%)
Length = 331
Score = 29.6 bits (65), Expect = 0.54
Identities = 24/69 (34%), Positives = 30/69 (42%), Gaps = 3/69 (4%)
Frame = +2
Query: 102 SSKPSLAEPQPCFPDLNSMGLASEDSFGYE---QWLSASSKPSLGEAQPYFPSYIPSTIP 158
+S P ++P P PD L SE F SAS PS + PY P+ T P
Sbjct: 89 TSSPPPSQPDPN-PDSRRAPLRSECPFKKTPPPSPSSASPAPSAKSSSPYSPTATSPTAP 265
Query: 159 SPTSSVAAP 167
S S +AP
Sbjct: 266 SRCSPPSAP 292
>TC7889 similar to UP|Q40336 (Q40336) Proline-rich cell wall protein,
partial (66%)
Length = 1158
Score = 29.6 bits (65), Expect = 0.54
Identities = 24/100 (24%), Positives = 35/100 (35%)
Frame = +1
Query: 16 PQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDFFPES 75
P P+ P + V +PP V+ P+V VP P + P P Y + P+
Sbjct: 94 PPPYVPKPPVVSPPYVPKPPVVPVTPPYVPKPPV---VPVTPPYVPKPPIVYPPPYVPKP 264
Query: 76 DSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQPCFP 115
V P Y PP P + +P +P
Sbjct: 265 PIVKPPIVYP-------------PPYVPTPPIVKPPIVYP 345
>TC7812 UP|Q9LKJ6 (Q9LKJ6) Water-selective transport intrinsic membrane
protein 1, complete
Length = 1149
Score = 28.9 bits (63), Expect = 0.92
Identities = 30/108 (27%), Positives = 38/108 (34%), Gaps = 11/108 (10%)
Frame = +1
Query: 10 WGYYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGY 69
W SPP S+ +P + + N P +AP PA PP+P H P S
Sbjct: 145 WLSSSPPSSSSSPAPVPESPTTNSP----TTAP---PPPPASSPPPSPTHSPSSSPSPSA 303
Query: 70 DFFP-----------ESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPS 106
P S +V+ P S SF PP SS S
Sbjct: 304 PTSPAATSTPPSPSASSSAVTSPSSAVSSTSSLSFSDPSSPPCSSPSS 447
>TC16018 UP|Q8MZB8 (Q8MZB8) AT15479p (CG31542-PA), partial (7%)
Length = 425
Score = 28.9 bits (63), Expect = 0.92
Identities = 28/92 (30%), Positives = 35/92 (37%), Gaps = 1/92 (1%)
Frame = +2
Query: 15 PPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDFFPE 74
PP P ST SPY++ + PP P YG P P P P YG P
Sbjct: 137 PPPPGSTGSPYSSFNNPYPPP---------QQQPPFYGEPHRPP--PQQPPFYGE---PH 274
Query: 75 SDSVSKPYGYSGLASED-SFWYDQWPPTSSKP 105
S+P S D ++ + PP S P
Sbjct: 275 RPPPSQPETNVFHTSHDVTYGHVSHPPQSHHP 370
>TC16424 similar to UP|Q9FZF1 (Q9FZF1) T2E6.18, partial (39%)
Length = 537
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/79 (30%), Positives = 34/79 (42%), Gaps = 1/79 (1%)
Frame = +1
Query: 99 PPTSSKPSLAEPQPCFPDLNSMGLASEDS-FGYEQWLSASSKPSLGEAQPYFPSYIPSTI 157
P TSS + P P + A+ S G +S S+P + A PS
Sbjct: 292 PRTSSVRTRTSPNASRPSSPASASAARPSGSGSSCRISTRSEPPIQNATSCSPS------ 453
Query: 158 PSPTSSVAAPIHWSSSSGF 176
SPT++ A+ WSSS G+
Sbjct: 454 -SPTAAKASTTSWSSSCGW 507
>AV408622
Length = 415
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/82 (26%), Positives = 35/82 (41%), Gaps = 5/82 (6%)
Frame = +1
Query: 98 WPPTSSKPSLAEPQPCFPDLN-----SMGLASEDSFGYEQWLSASSKPSLGEAQPYFPSY 152
WPP+S+ +P+P + S L+ G +S PS + P
Sbjct: 157 WPPSSTNSHSLQPRPSSAPQSILHPPSSALSPPHPIGNPFGTLSSVAPSPRKHPRQNPPR 336
Query: 153 IPSTIPSPTSSVAAPIHWSSSS 174
P+T P T+S +AP +S+S
Sbjct: 337 NPATSPPSTASSSAPASAASAS 402
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.312 0.132 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,795,262
Number of Sequences: 28460
Number of extensions: 105113
Number of successful extensions: 770
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of query: 258
length of database: 4,897,600
effective HSP length: 88
effective length of query: 170
effective length of database: 2,393,120
effective search space: 406830400
effective search space used: 406830400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0207.8