BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0207.10
(325 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC9175 weakly similar to UP|INAD_DROME (Q24008) Inactivation-no-... 162 5e-41
BP049555 130 3e-31
TC16918 weakly similar to UP|Q9FJH5 (Q9FJH5) Gb|AAC98457.1 (At5g... 72 1e-13
TC13685 similar to UP|Q9FJH5 (Q9FJH5) Gb|AAC98457.1 (At5g60800),... 71 3e-13
BI418928 66 7e-12
BP039352 63 8e-11
AV418862 62 1e-10
TC9825 similar to UP|Q9ZRD8 (Q9ZRD8) GMFP5 (Fragment), partial (... 62 1e-10
TC12523 60 5e-10
AV776074 51 3e-07
CB828502 50 5e-07
TC11547 similar to UP|Q9SE03 (Q9SE03) Copper chaperone homolog C... 47 6e-06
TC16731 similar to UP|Q84KJ2 (Q84KJ2) Copper chaperone, partial ... 47 6e-06
TC11276 weakly similar to UP|HDA1_CHICK (P56517) Histone deacety... 45 1e-05
AV416122 42 2e-04
AV775813 42 2e-04
TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, ... 41 3e-04
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%) 40 4e-04
TC16026 similar to UP|Q9SGZ3 (Q9SGZ3) F28K19.29, partial (32%) 40 7e-04
TC8309 UP|O22306 (O22306) Nlj21, complete 39 0.001
>TC9175 weakly similar to UP|INAD_DROME (Q24008)
Inactivation-no-after-potential D protein, partial (5%)
Length = 692
Score = 162 bits (411), Expect = 5e-41
Identities = 85/142 (59%), Positives = 103/142 (71%), Gaps = 3/142 (2%)
Frame = +2
Query: 187 KLVEYVYRRTKKLAKIIPQPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSE 246
KLVEYVYRRTKK AKI+PQPEP EPE + E + E E+ +EK EE+K
Sbjct: 2 KLVEYVYRRTKKQAKIVPQPEP----EPEKKEEGKEEEKPAAEEGKPEEKKEEEKAAEEA 169
Query: 247 MKEEGGDDKNENKEEKSGEEGEEEEADREVDGDQNGMMLNIDEG-SMKRMMYYYQ--PLY 303
KEEGG++KN+NKEEK GEEG+EE E + NG ++N++E SMKRMMYYYQ PLY
Sbjct: 170 KKEEGGEEKNDNKEEKGGEEGKEEGKKEE---NNNGAVVNMEEELSMKRMMYYYQYPPLY 340
Query: 304 MVEHIPPPQLFSDENPNACCIS 325
++E +PPPQLFSDENPNACCIS
Sbjct: 341 VIERMPPPQLFSDENPNACCIS 406
Score = 34.7 bits (78), Expect = 0.023
Identities = 20/49 (40%), Positives = 26/49 (52%), Gaps = 5/49 (10%)
Frame = +2
Query: 4 EAKQLKKDASVHHDEPPKAESKPKEKPEEEK-----KGEKSVEEKKDPK 47
E + KK+ ++P E KP+EK EEEK K E+ EEK D K
Sbjct: 62 EPEPEKKEEGKEEEKPAAEEGKPEEKKEEEKAAEEAKKEEGGEEKNDNK 208
>BP049555
Length = 555
Score = 130 bits (327), Expect = 3e-31
Identities = 69/110 (62%), Positives = 86/110 (77%), Gaps = 6/110 (5%)
Frame = +2
Query: 1 MGEEAKQLKKDASVHHDEPP--KAESKPKEKP--EEEKKGEKSVEEKKD--PKPPSPCVL 54
MGEEAKQ + A +E KAE K +EKP EE+K+ EK EEKK+ PKPP+PCVL
Sbjct: 224 MGEEAKQEQPQAEAKPEEKTEEKAEEKAEEKPAAEEKKEEEKPEEEKKEEEPKPPAPCVL 403
Query: 55 FVDLHCVGCARKIEKCIMKLRGVERVLIDMAKKEVMIKGIVEPKAICNII 104
+VDLHCVGCA+KIE+ +MK+RGVE ++IDMAK EV IKGIVEP+AIC++I
Sbjct: 404 YVDLHCVGCAKKIERYMMKMRGVEGLVIDMAKNEVTIKGIVEPQAICDMI 553
Score = 41.6 bits (96), Expect = 2e-04
Identities = 18/71 (25%), Positives = 38/71 (53%)
Frame = +2
Query: 122 EGEPVPEIVNSQVSEPVTVELNVNMHCEACAEQLKGKILKMRGVQTAVAKLSTGKVIVTG 181
E +P E + P L V++HC CA++++ ++KMRGV+ V ++ +V + G
Sbjct: 341 EEKPEEEKKEEEPKPPAPCVLYVDLHCVGCAKKIERYMMKMRGVEGLVIDMAKNEVTIKG 520
Query: 182 TMDANKLVEYV 192
++ + + +
Sbjct: 521 IVEPQAICDMI 553
Score = 35.8 bits (81), Expect = 0.010
Identities = 19/45 (42%), Positives = 24/45 (53%)
Frame = +2
Query: 227 KVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEEGEEEE 271
K E + KPEEK E +E K E E KEE+ EE ++EE
Sbjct: 239 KQEQPQAEAKPEEKTEEKAEEKAEEKPAAEEKKEEEKPEEEKKEE 373
Score = 33.1 bits (74), Expect = 0.066
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +2
Query: 205 QPEPELELEPEPEPEPETEPGQKVEDKD-TDEKPEEKKVENSEMKEE 250
Q +P+ E +PE + E + E +K E+K +EK EE+K E + +EE
Sbjct: 242 QEQPQAEAKPEEKTEEKAE--EKAEEKPAAEEKKEEEKPEEEKKEEE 376
>TC16918 weakly similar to UP|Q9FJH5 (Q9FJH5) Gb|AAC98457.1 (At5g60800),
partial (24%)
Length = 498
Score = 72.4 bits (176), Expect = 1e-13
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
Frame = +2
Query: 137 PVTVELNVNMHCEACAEQLKGKILKMRGVQTAVAKLSTGKVIVTGTMDANKLVEYVYRRT 196
P + +++HCE C +++K + GV+ A+L KV VTG DA KL + +T
Sbjct: 131 PAPIVYKLDLHCEGCIKKIKRTVRHFEGVENVKAELEANKVTVTGKFDAVKLQAKIAEKT 310
Query: 197 KKLAKIIPQPEPE----LELEPEPEPEPETEPGQKVEDKDTDE-KPEEKKVENS 245
KK ++ P + E PE +PE + +K E+K +DE KPEEKK + S
Sbjct: 311 KKKVDLVSAPPKKDAGAGEKSPEKKPEEKKSDEKKSEEKKSDEKKPEEKKPKES 472
Score = 58.5 bits (140), Expect = 1e-09
Identities = 36/117 (30%), Positives = 59/117 (49%), Gaps = 3/117 (2%)
Frame = +2
Query: 15 HHDEPPKAESKPKEKPEEEKKGEKSVEEKKDPKPPSPCVLFVDLHCVGCARKIEKCIMKL 74
+H + K K KE+P+ E + K D P+P V +DLHC GC +KI++ +
Sbjct: 38 YHTQTQKMGEK-KEQPKNETAKKPDEGAKNDA--PAPIVYKLDLHCEGCIKKIKRTVRHF 208
Query: 75 RGVERVLIDMAKKEVMIKGIVEPKAICNIITKKTKRLAKVISPLPEAE---GEPVPE 128
GVE V ++ +V + G + + I +KTK+ ++S P+ + GE PE
Sbjct: 209 EGVENVKAELEANKVTVTGKFDAVKLQAKIAEKTKKKVDLVSAPPKKDAGAGEKSPE 379
Score = 34.7 bits (78), Expect = 0.023
Identities = 17/43 (39%), Positives = 23/43 (52%)
Frame = +2
Query: 9 KKDASVHHDEPPKAESKPKEKPEEEKKGEKSVEEKKDPKPPSP 51
KKDA P E KP+EK +EKK E+ ++K P+ P
Sbjct: 344 KKDAGAGEKSP---EKKPEEKKSDEKKSEEKKSDEKKPEEKKP 463
Score = 34.3 bits (77), Expect = 0.029
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +2
Query: 5 AKQLKKDASVHHDEPPK----AESKPKEKPEEEKKGEKSVEEKK-DPKPP 49
A++ KK + P K E P++KPEE+K EK EEKK D K P
Sbjct: 299 AEKTKKKVDLVSAPPKKDAGAGEKSPEKKPEEKKSDEKKSEEKKSDEKKP 448
Score = 27.3 bits (59), Expect = 3.6
Identities = 13/32 (40%), Positives = 18/32 (55%)
Frame = +2
Query: 19 PPKAESKPKEKPEEEKKGEKSVEEKKDPKPPS 50
PPK ++ EK E+K EK +EKK + S
Sbjct: 338 PPKKDAGAGEKSPEKKPEEKKSDEKKSEEKKS 433
>TC13685 similar to UP|Q9FJH5 (Q9FJH5) Gb|AAC98457.1 (At5g60800), partial
(37%)
Length = 585
Score = 70.9 bits (172), Expect = 3e-13
Identities = 38/108 (35%), Positives = 61/108 (56%)
Frame = +2
Query: 139 TVELNVNMHCEACAEQLKGKILKMRGVQTAVAKLSTGKVIVTGTMDANKLVEYVYRRTKK 198
TV L V+MHCE CA ++ + +GV+T A+ +TGKV V+G +D KL + + + KK
Sbjct: 185 TVVLKVDMHCEGCASKIVKNLRAFKGVETVKAESNTGKVTVSGKVDPTKLRDSLAEKIKK 364
Query: 199 LAKIIPQPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSE 246
+++ P+P+ E E + +TE K E +K EEKK+ +
Sbjct: 365 KVELV-SPQPKKEKEKAENKDKDTETNNKAE-----KKTEEKKINKDK 490
Score = 68.6 bits (166), Expect = 1e-12
Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 18/148 (12%)
Frame = +2
Query: 36 GEKSVEEKKDPKPPSPCVLFVDLHCVGCARKIEKCIMKLRGVERVLIDMAKKEVMIKGIV 95
GE KKD + VL VD+HC GCA KI K + +GVE V + +V + G V
Sbjct: 143 GENHDAGKKDDTTTT-VVLKVDMHCEGCASKIVKNLRAFKGVETVKAESNTGKVTVSGKV 319
Query: 96 EPKAICNIITKKTKRLAKVISPLPEAEGEPV------------------PEIVNSQVSEP 137
+P + + + +K K+ +++SP P+ E E + +N
Sbjct: 320 DPTKLRDSLAEKIKKKVELVSPQPKKEKEKAENKDKDTETNNKAEKKTEEKKINKDKQAV 499
Query: 138 VTVELNVNMHCEACAEQLKGKILKMRGV 165
T L V +HC+ C +++ +LK +GV
Sbjct: 500 TTAVLKVPLHCQGCIDRIGKFVLKTKGV 583
Score = 49.3 bits (116), Expect = 9e-07
Identities = 29/79 (36%), Positives = 42/79 (52%), Gaps = 6/79 (7%)
Frame = +2
Query: 5 AKQLKKDASVHHDEPPKAESKPKEKP---EEEKKGEKSVEEKK---DPKPPSPCVLFVDL 58
A+++KK + +P K + K + K E K EK EEKK D + + VL V L
Sbjct: 347 AEKIKKKVELVSPQPKKEKEKAENKDKDTETNNKAEKKTEEKKINKDKQAVTTAVLKVPL 526
Query: 59 HCVGCARKIEKCIMKLRGV 77
HC GC +I K ++K +GV
Sbjct: 527 HCQGCIDRIGKFVLKTKGV 583
>BI418928
Length = 496
Score = 66.2 bits (160), Expect = 7e-12
Identities = 42/169 (24%), Positives = 78/169 (45%), Gaps = 29/169 (17%)
Frame = +3
Query: 28 EKPEEEKKGEKSVEEKKDPKPPSPCVLFVDLHCVGCARKIEKCIMKLRGVERVLIDMAKK 87
EK E+ K E +V VL +DLHC GC +KI++ + GVE V D++
Sbjct: 18 EKTEQAKNNENAV------------VLKLDLHCEGCVKKIKRALRNFNGVEDVKADLSGN 161
Query: 88 EVMIKGIVEPKAICNIITKKTKRLAKVIS-----------PLPEAEGEPVPEIVNSQVSE 136
++ + G V+P + + + +KT + +++S P PE + E P+ + + E
Sbjct: 162 KLTVIGKVDPTKVRDKLAEKTNKNVELVSSPPKKDAAGDKPPPEKKPEEKPKTDDKKPEE 341
Query: 137 ------------------PVTVELNVNMHCEACAEQLKGKILKMRGVQT 167
TV + + +HC+ C +++ +LK +GV++
Sbjct: 342 EKTKPDEKKAEEKTKTPKQSTVVMKIRLHCDGCIHKIEKIVLKAKGVES 488
Score = 65.9 bits (159), Expect = 9e-12
Identities = 34/107 (31%), Positives = 57/107 (52%), Gaps = 3/107 (2%)
Frame = +3
Query: 140 VELNVNMHCEACAEQLKGKILKMRGVQTAVAKLSTGKVIVTGTMDANKLVEYVYRRTKKL 199
V L +++HCE C +++K + GV+ A LS K+ V G +D K+ + + +T K
Sbjct: 54 VVLKLDLHCEGCVKKIKRALRNFNGVEDVKADLSGNKLTVIGKVDPTKVRDKLAEKTNKN 233
Query: 200 AKIIPQPEPELELEPEPEPEPETEPGQKVEDKDTDE---KPEEKKVE 243
+++ P + +P PE + E K +DK +E KP+EKK E
Sbjct: 234 VELVSSPPKKDAAGDKPPPEKKPEEKPKTDDKKPEEEKTKPDEKKAE 374
Score = 61.2 bits (147), Expect = 2e-10
Identities = 39/80 (48%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Frame = +3
Query: 9 KKDASVHHDEPP---KAESKPK---EKPEEEKK--GEKSVEEKKDPKPPSPCVLFVDLHC 60
KKDA+ D+PP K E KPK +KPEEEK EK EEK S V+ + LHC
Sbjct: 258 KKDAA--GDKPPPEKKPEEKPKTDDKKPEEEKTKPDEKKAEEKTKTPKQSTVVMKIRLHC 431
Query: 61 VGCARKIEKCIMKLRGVERV 80
GC KIEK ++K +GVE V
Sbjct: 432 DGCIHKIEKIVLKAKGVESV 491
>BP039352
Length = 528
Score = 62.8 bits (151), Expect = 8e-11
Identities = 49/146 (33%), Positives = 71/146 (48%), Gaps = 13/146 (8%)
Frame = -2
Query: 192 VYRRTKKLAKIIPQPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEG 251
VY+RT K I+ + EPE + E + E+K DE EKK +++ G
Sbjct: 527 VYKRTGKQPVIV-----------KSEPEKKEEAKEAKEEKKGDE---EKKGDDAA----G 402
Query: 252 GDDKNENKEEKSGEEGEEEEADREVDGDQNGMMLNIDEGSMKRMMYYYQP-LYMVE---- 306
G ENKE+K GE GE + + E ++ ++ MK+ YY+ P Y +E
Sbjct: 401 GGGAEENKEKKEGE-GEAKTGEGETTTEETKVV------EMKKSEYYFNPPRYGMEFYAG 243
Query: 307 --------HIPPPQLFSDENPNACCI 324
+ PPPQ+FSDENPNAC +
Sbjct: 242 GGGYPGPAYPPPPQIFSDENPNACSV 165
>AV418862
Length = 235
Score = 62.4 bits (150), Expect = 1e-10
Identities = 31/75 (41%), Positives = 47/75 (62%)
Frame = +1
Query: 124 EPVPEIVNSQVSEPVTVELNVNMHCEACAEQLKGKILKMRGVQTAVAKLSTGKVIVTGTM 183
+P PE + + V L V+MHCEAC++++K +I +++GV++A L V V G
Sbjct: 10 KPKPEEKKEEPQITIAV-LKVHMHCEACSQEIKRRIERIKGVESAEPDLKNSLVSVKGVF 186
Query: 184 DANKLVEYVYRRTKK 198
+ KLVEYVY+RT K
Sbjct: 187 ETEKLVEYVYKRTGK 231
Score = 48.1 bits (113), Expect = 2e-06
Identities = 25/80 (31%), Positives = 45/80 (56%)
Frame = +1
Query: 29 KPEEEKKGEKSVEEKKDPKPPSPCVLFVDLHCVGCARKIEKCIMKLRGVERVLIDMAKKE 88
+PE+ K EEKK+ + VL V +HC C+++I++ I +++GVE D+
Sbjct: 1 RPEKPKP-----EEKKEEPQITIAVLKVHMHCEACSQEIKRRIERIKGVESAEPDLKNSL 165
Query: 89 VMIKGIVEPKAICNIITKKT 108
V +KG+ E + + + K+T
Sbjct: 166 VSVKGVFETEKLVEYVYKRT 225
>TC9825 similar to UP|Q9ZRD8 (Q9ZRD8) GMFP5 (Fragment), partial (44%)
Length = 848
Score = 62.0 bits (149), Expect = 1e-10
Identities = 55/190 (28%), Positives = 82/190 (42%), Gaps = 25/190 (13%)
Frame = +2
Query: 160 LKMRGVQTAVAKLSTGKVIVTGTMDANKLVEYVYRRTKKLAKIIPQPEPELELEPEPEPE 219
++ +GV++ V V GTMDA +LV YV +TK+ ++P P+ E E + E
Sbjct: 8 VRFKGVESVNLDGDKDLVTVKGTMDAKELVAYVTEKTKRNVDVVP-PKKE-----EDKKE 169
Query: 220 PETEPGQKVEDKDTDEKPEE--------KKVENSEMKEE-----------GGDDKNENKE 260
E +K ++KD +K +E K VE ++M+ + G +
Sbjct: 170 KEGGGEKKEKEKDNKDKKDEGAVAAAAAKVVEVNQMEYQYPLQTPPMYWYDGQHEQGASS 349
Query: 261 EKSGEEGEEEEADREVDGDQNGMMLNIDEGSMKRMMYYY------QPLYMVEHIPPPQLF 314
S G EV + ++ M Y QP YM H PPPQ+F
Sbjct: 350 SSSSYGGYGGYGGMEVHHEPMYNNHYMEPSGYHVMNQGYPMQPPPQPFYMQPH-PPPQMF 526
Query: 315 SDENPNACCI 324
SDENPNAC +
Sbjct: 527 SDENPNACSV 556
Score = 37.4 bits (85), Expect = 0.003
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +2
Query: 72 MKLRGVERVLIDMAKKEVMIKGIVEPKAICNIITKKTKRLAKVISPLPEAE 122
++ +GVE V +D K V +KG ++ K + +T+KTKR V+ P E +
Sbjct: 8 VRFKGVESVNLDGDKDLVTVKGTMDAKELVAYVTEKTKRNVDVVPPKKEED 160
Score = 26.2 bits (56), Expect = 8.0
Identities = 14/29 (48%), Positives = 18/29 (61%), Gaps = 2/29 (6%)
Frame = +2
Query: 19 PPKAESKPKEKP--EEEKKGEKSVEEKKD 45
PPK E KEK E+K+ EK ++KKD
Sbjct: 140 PPKKEEDKKEKEGGGEKKEKEKDNKDKKD 226
>TC12523
Length = 603
Score = 60.1 bits (144), Expect = 5e-10
Identities = 51/168 (30%), Positives = 80/168 (47%)
Frame = +2
Query: 115 ISPLPEAEGEPVPEIVNSQVSEPVTVELNVNMHCEACAEQLKGKILKMRGVQTAVAKLST 174
++P P E P E + Q T L V +HC+ C +++K + + GV T
Sbjct: 20 MAPKPAEEEAPRGETLKYQ-----TWVLKVLIHCDGCTKRVKKILQGIDGVYTTEIDPRQ 184
Query: 175 GKVIVTGTMDANKLVEYVYRRTKKLAKIIPQPEPELELEPEPEPEPETEPGQKVEDKDTD 234
KVIVTG +DA L+ + R K +EL PE E + + +K + DT
Sbjct: 185 HKVIVTGNVDAETLIRRLTRSGK-----------SVELWPELPAEKKDKKLEKSKGGDTK 331
Query: 235 EKPEEKKVENSEMKEEGGDDKNENKEEKSGEEGEEEEADREVDGDQNG 282
K +E + +NSE +GG NE+ + +GE + + D +V GD +G
Sbjct: 332 NKEKENQ-KNSEPVGDGG--SNEDCIDAAGE--DSDHCDDDVCGDASG 460
Score = 40.8 bits (94), Expect = 3e-04
Identities = 24/90 (26%), Positives = 44/90 (48%)
Frame = +2
Query: 20 PKAESKPKEKPEEEKKGEKSVEEKKDPKPPSPCVLFVDLHCVGCARKIEKCIMKLRGVER 79
P ++ PK EE +GE + VL V +HC GC ++++K + + GV
Sbjct: 8 PFSQMAPKPAEEEAPRGETLKYQT--------WVLKVLIHCDGCTKRVKKILQGIDGVYT 163
Query: 80 VLIDMAKKEVMIKGIVEPKAICNIITKKTK 109
ID + +V++ G V+ + + +T+ K
Sbjct: 164 TEIDPRQHKVIVTGNVDAETLIRRLTRSGK 253
>AV776074
Length = 391
Score = 50.8 bits (120), Expect = 3e-07
Identities = 31/93 (33%), Positives = 49/93 (52%)
Frame = +1
Query: 1 MGEEAKQLKKDASVHHDEPPKAESKPKEKPEEEKKGEKSVEEKKDPKPPSPCVLFVDLHC 60
MGEE K+ ++ S P +A K + + ++ +K E KD PP VL V +H
Sbjct: 88 MGEEEKKAEEKKS---RGPTRAREKRRRRKNRRRR-QKPEEPSKDQAPPPEMVLRVFMHG 255
Query: 61 VGCARKIEKCIMKLRGVERVLIDMAKKEVMIKG 93
G ARK+ + + GVE V+ D ++V++KG
Sbjct: 256 EGRARKVRRSLKGCPGVEDVITDCKSQKVVVKG 354
>CB828502
Length = 536
Score = 50.1 bits (118), Expect = 5e-07
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Frame = +3
Query: 139 TVELNVNMHCEACAEQLKGKILKMRGVQTAVAKLSTGKVIVTGTMDANKLVEYVYRRTKK 198
TVE+ V M C+ C +++ + M+GV + + KV VTG ++ NK+V + T K
Sbjct: 117 TVEVKVKMDCDGCERKVRKAVEGMKGVNSVDIERKASKVTVTGYVEPNKVVSRIAHHTGK 296
Query: 199 LAKIIPQPEPELELEP-EPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMK 248
A+I P ++ P P + P V D + + + + ++E++
Sbjct: 297 KAEIWPYVPYDVVAHPYAPGVYDKRAPSGYVRDAEQTQYSQLTRASSTEVR 449
Score = 42.0 bits (97), Expect = 1e-04
Identities = 20/64 (31%), Positives = 34/64 (52%)
Frame = +3
Query: 56 VDLHCVGCARKIEKCIMKLRGVERVLIDMAKKEVMIKGIVEPKAICNIITKKTKRLAKVI 115
V + C GC RK+ K + ++GV V I+ +V + G VEP + + I T + A++
Sbjct: 132 VKMDCDGCERKVRKAVEGMKGVNSVDIERKASKVTVTGYVEPNKVVSRIAHHTGKKAEIW 311
Query: 116 SPLP 119
+P
Sbjct: 312 PYVP 323
>TC11547 similar to UP|Q9SE03 (Q9SE03) Copper chaperone homolog CCH, partial
(71%)
Length = 528
Score = 46.6 bits (109), Expect = 6e-06
Identities = 21/60 (35%), Positives = 37/60 (61%)
Frame = +1
Query: 53 VLFVDLHCVGCARKIEKCIMKLRGVERVLIDMAKKEVMIKGIVEPKAICNIITKKTKRLA 112
VL V + C GCA + + + K+ GVE ID+ +++V +KG V+P+ + ++K K+ A
Sbjct: 40 VLKVRMSCQGCAGAVNRVLEKMEGVESFNIDLKEQKVTVKGNVKPEDVLETVSKSGKKTA 219
Score = 40.4 bits (93), Expect = 4e-04
Identities = 30/108 (27%), Positives = 47/108 (42%), Gaps = 6/108 (5%)
Frame = +1
Query: 139 TVELNVNMHCEACAEQLKGKILKMRGVQTAVAKLSTGKVIVTGTMDANKLVEYVYRRTKK 198
TV L V M C+ CA + + KM GV++ L KV V G + ++E V + KK
Sbjct: 34 TVVLKVRMSCQGCAGAVNRVLEKMEGVESFNIDLKEQKVTVKGNVKPEDVLETVSKSGKK 213
Query: 199 LAKIIPQPEPELELEPEPEPEPETEPGQKVEDKDTD------EKPEEK 240
A P E + +P +E+K ++ ++PE K
Sbjct: 214 TA-FWEDEAPAATQAAETQKQPSETATPDLENKPSETAAVVSDEPENK 354
>TC16731 similar to UP|Q84KJ2 (Q84KJ2) Copper chaperone, partial (83%)
Length = 517
Score = 46.6 bits (109), Expect = 6e-06
Identities = 21/60 (35%), Positives = 37/60 (61%)
Frame = +3
Query: 53 VLFVDLHCVGCARKIEKCIMKLRGVERVLIDMAKKEVMIKGIVEPKAICNIITKKTKRLA 112
VL V + C GC +++ + KL GVE ID+ +++V++KG V+P + ++K K+ A
Sbjct: 75 VLKVGMSCEGCVGAVKRVLGKLEGVESYDIDLKEQKVVVKGNVQPDTVLQTVSKTGKKTA 254
Score = 39.3 bits (90), Expect = 0.001
Identities = 21/62 (33%), Positives = 33/62 (52%)
Frame = +3
Query: 139 TVELNVNMHCEACAEQLKGKILKMRGVQTAVAKLSTGKVIVTGTMDANKLVEYVYRRTKK 198
TV L V M CE C +K + K+ GV++ L KV+V G + + +++ V + KK
Sbjct: 69 TVVLKVGMSCEGCVGAVKRVLGKLEGVESYDIDLKEQKVVVKGNVQPDTVLQTVSKTGKK 248
Query: 199 LA 200
A
Sbjct: 249 TA 254
>TC11276 weakly similar to UP|HDA1_CHICK (P56517) Histone deacetylase 1
(HD1), partial (5%)
Length = 636
Score = 45.4 bits (106), Expect = 1e-05
Identities = 31/112 (27%), Positives = 51/112 (44%)
Frame = +3
Query: 213 EPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEEGEEEEA 272
EPE + EP+ E QK E+K + K EE + E ++ +E K E K+++ EE +++E
Sbjct: 24 EPEKKEEPKKEEPQKEEEKKDEPKSEEPQKEEAKKEE---PKKEEEKKDEKKEEEKKKEQ 194
Query: 273 DREVDGDQNGMMLNIDEGSMKRMMYYYQPLYMVEHIPPPQLFSDENPNACCI 324
++D + Y+ Q + +ENPNAC I
Sbjct: 195 PAQIDPVLEWVKAYRQYNPHMTTYYHVQSM-------------EENPNACVI 311
Score = 38.9 bits (89), Expect = 0.001
Identities = 22/47 (46%), Positives = 28/47 (58%), Gaps = 1/47 (2%)
Frame = +3
Query: 3 EEAKQLKKDASVHHDEPPKAESKPKE-KPEEEKKGEKSVEEKKDPKP 48
E K+ +K +EP K E+K +E K EEEKK EK EEKK +P
Sbjct: 57 EPQKEEEKKDEPKSEEPQKEEAKKEEPKKEEEKKDEKKEEEKKKEQP 197
Score = 29.3 bits (64), Expect = 0.95
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 17 DEPPKAESKPKEKPEEEKKGEKSVE 41
+EP K E K EK EEEKK E+ +
Sbjct: 129 EEPKKEEEKKDEKKEEEKKKEQPAQ 203
>AV416122
Length = 414
Score = 41.6 bits (96), Expect = 2e-04
Identities = 23/78 (29%), Positives = 35/78 (44%)
Frame = +3
Query: 204 PQPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKS 263
P P+L PEP P+ TD+ + K ++ E D + E +EE+
Sbjct: 138 PTKAPKLAATPEPNPDSNDNNNNHPAVSATDDCSSQPKEAANDDNEPDNDVQFEGEEEED 317
Query: 264 GEEGEEEEADREVDGDQN 281
EE +EEE + E D D +
Sbjct: 318 DEEDKEEEDEEEDDEDDD 371
>AV775813
Length = 466
Score = 41.6 bits (96), Expect = 2e-04
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Frame = -2
Query: 265 EEGEEEEADREVDGDQNGMMLNIDEG-SMKRMMYYY--QPLYMVEHIPPPQLFS 315
EEG+EE E + +G + N++E SMKRMMYYY PL ++E +PPP S
Sbjct: 465 EEGKEEGKKEE---NHHGPVANMEEELSMKRMMYYYPTPPL*VIERMPPPPALS 313
>TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(31%)
Length = 727
Score = 40.8 bits (94), Expect = 3e-04
Identities = 23/79 (29%), Positives = 42/79 (53%)
Frame = +1
Query: 198 KLAKIIPQPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNE 257
K K++P+ EL + + + E E + E ++ E+ E++ E E +EEG +++ E
Sbjct: 109 KKRKLVPKSSQSAELPFKLQNKLEAEVQEYEEVEEEVEEEVEEEEEEEEEEEEGEEEEEE 288
Query: 258 NKEEKSGEEGEEEEADREV 276
+EE+ E EEE D +
Sbjct: 289 EEEEEEVEAEAEEEDDEPI 345
Score = 34.3 bits (77), Expect = 0.029
Identities = 23/81 (28%), Positives = 44/81 (53%)
Frame = +1
Query: 216 PEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEEGEEEEADRE 275
P+ E K+++K E E ++VE E++EE +++ E +EE EEGEEEE + E
Sbjct: 127 PKSSQSAELPFKLQNKLEAEVQEYEEVEE-EVEEEVEEEEEEEEEE---EEGEEEEEEEE 294
Query: 276 VDGDQNGMMLNIDEGSMKRMM 296
+ + D+ +++++
Sbjct: 295 EEEEVEAEAEEEDDEPIQKLL 357
>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
Length = 1008
Score = 40.4 bits (93), Expect = 4e-04
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = -2
Query: 197 KKLAKIIPQPEPELELEPEPEPEPET-EPGQKVEDKDTDEKPEEKKVENSEMKEEGGDD- 254
K +K P+ P PE E E E G+ ED D D+ E+ + +++GG+D
Sbjct: 497 KSNSKKAPEGGPGAGAGPEENGEDEEDEDGEDQEDDDDDD-------EDDDEEDDGGEDE 339
Query: 255 KNENKEEKSGEEGEEEEADRE 275
+ E EE+ E+ EE+E D E
Sbjct: 338 EEEGVEEEDNEDEEEDEEDEE 276
Score = 27.7 bits (60), Expect = 2.8
Identities = 13/38 (34%), Positives = 19/38 (49%)
Frame = -2
Query: 244 NSEMKEEGGDDKNENKEEKSGEEGEEEEADREVDGDQN 281
NS+ EGG EE +E +E+ D+E D D +
Sbjct: 491 NSKKAPEGGPGAGAGPEENGEDEEDEDGEDQEDDDDDD 378
Score = 27.7 bits (60), Expect = 2.8
Identities = 16/60 (26%), Positives = 26/60 (42%)
Frame = -2
Query: 234 DEKPEEKKVENSEMKEEGGDDKNENKEEKSGEEGEEEEADREVDGDQNGMMLNIDEGSMK 293
+ K + + ++ E+G DD+ + ++ G GE EE DG G N S K
Sbjct: 659 ETKSQSEDKQHDAEGEDGNDDEGDEDDDGDGPFGEGEEDLSSEDGAGYGNNSNNKSNSKK 480
Score = 27.3 bits (59), Expect = 3.6
Identities = 10/32 (31%), Positives = 17/32 (52%)
Frame = -2
Query: 248 KEEGGDDKNENKEEKSGEEGEEEEADREVDGD 279
K E + + + GE+G ++E D + DGD
Sbjct: 665 KGETKSQSEDKQHDAEGEDGNDDEGDEDDDGD 570
>TC16026 similar to UP|Q9SGZ3 (Q9SGZ3) F28K19.29, partial (32%)
Length = 1183
Score = 39.7 bits (91), Expect = 7e-04
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Frame = -2
Query: 235 EKPEEKK--VENSEMKEEGGDDKNENKEEKSGEEGEEEEADREVDGDQNGMMLNIDE 289
E+P EKK E E KE GG+++ ++ ++ GE EEEE + E +G++ + + + E
Sbjct: 774 EQPSEKKGVTEGEE*KELGGEEQGRDEFDEDGEGEEEEEEEEEEEGEKVEVEVGVGE 604
Score = 29.3 bits (64), Expect = 0.95
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Frame = +1
Query: 218 PEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDD---KNENKEEKSGEEGEEEEADR 274
P P ++P + D D E+P SE + + +E GE + EA +
Sbjct: 856 PNPISDPSDPISDPDPTEQPPPMAESESESPSQHHTQLP*SEADSDEARGESSKTHEAIQ 1035
Query: 275 EVDGDQNGMMLNIDEGS 291
+ + G M D+ S
Sbjct: 1036RSEAEALGKMGR*DQAS 1086
Score = 26.2 bits (56), Expect = 8.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 2 GEEAKQLKKDASVHHDEPPKAESKPKEKPEEEKKGEK 38
GEE K+L + + E + +E+ EEE++GEK
Sbjct: 741 GEE*KELGGEEQGRDEFDEDGEGEEEEEEEEEEEGEK 631
>TC8309 UP|O22306 (O22306) Nlj21, complete
Length = 1063
Score = 38.9 bits (89), Expect = 0.001
Identities = 46/167 (27%), Positives = 67/167 (39%), Gaps = 12/167 (7%)
Frame = +3
Query: 106 KKTKRLAKVISPLPEAEGEPVPEIVNS--QVSEPVTVELNVNMHCEACAEQLKGKILKMR 163
K T+++ + +P PE E E ++ + SEP E N ++ E
Sbjct: 267 KTTEQVVETQTPEPEPVSEKTKEEDSAVTEASEPEPTEDNPSIEAETTEV---------- 416
Query: 164 GVQTAVAKLSTGKVIVTGTMDANKLVEYVY-RRTKKLAKIIPQPEPELELEPEP------ 216
V+ V T + V D E + TK+ A + PE EPE
Sbjct: 417 -VEEVVTVTVTDEPKVEEKTDGEAKKEATETKETKESADPVEVQAPEAGEEPETVTLKED 593
Query: 217 ---EPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKE 260
E E EP K E +T E P+EKK E ++ EG D+K E +E
Sbjct: 594 ASKEEEKVAEPEAKEEVVNT-EAPDEKK-EEEKLDTEGSDEKKEEEE 728
Score = 35.0 bits (79), Expect = 0.017
Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 7/161 (4%)
Frame = +3
Query: 118 LPEAEGEPVPEIVNSQVSEPVTVELNVNMHCEACAEQLKGKILKMRGVQTAVAKLSTGKV 177
L + E + ++V +Q EP V A E + + + A +V
Sbjct: 249 LKDHEEKTTEQVVETQTPEPEPVSEKTKEEDSAVTEASEPEPTEDNPSIEAETTEVVEEV 428
Query: 178 IVTGTMDANKLVEYVYRRTKKLA---KIIPQPEPELELE-PEPEPEPETEPGQKVEDKDT 233
+ D K+ E KK A K + +E++ PE EPET ++ K+
Sbjct: 429 VTVTVTDEPKVEEKTDGEAKKEATETKETKESADPVEVQAPEAGEEPETVTLKEDASKE- 605
Query: 234 DEKPEEKKVENSEMKEEGGDDKNENKE---EKSGEEGEEEE 271
+EK E + + + E D+K E ++ E S E+ EEEE
Sbjct: 606 EEKVAEPEAKEEVVNTEAPDEKKEEEKLDTEGSDEKKEEEE 728
Score = 29.6 bits (65), Expect = 0.73
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Frame = +3
Query: 4 EAKQLKKDASVHHDEPPKAESK--------PKEKPEEEKKGEKSVEEKKD 45
E LK+DAS ++ + E+K P EK EEEK + +EKK+
Sbjct: 570 ETVTLKEDASKEEEKVAEPEAKEEVVNTEAPDEKKEEEKLDTEGSDEKKE 719
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.308 0.130 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,349,508
Number of Sequences: 28460
Number of extensions: 77637
Number of successful extensions: 1295
Number of sequences better than 10.0: 168
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of query: 325
length of database: 4,897,600
effective HSP length: 90
effective length of query: 235
effective length of database: 2,336,200
effective search space: 549007000
effective search space used: 549007000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0207.10