BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0206b.6
(90 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8722 similar to UP|Q9LU67 (Q9LU67) Phosphatidylserine decarbox... 28 0.28
TC11947 27 0.81
TC20204 weakly similar to UP|Q7NK30 (Q7NK30) Glr1650 protein, pa... 25 1.8
TC15270 similar to PIR|T01713|T01713 ribosomal protein L5, organ... 25 1.8
TC10764 25 2.4
TC18568 25 2.4
BP049336 25 3.1
TC16740 similar to UP|Q9SIJ8 (Q9SIJ8) Expressed protein (RD2 pro... 24 4.0
BP050565 24 4.0
BP069608 24 4.0
AV411854 24 4.0
BP084209 24 5.3
BP048740 24 5.3
BP065022 24 5.3
TC19568 24 5.3
TC9429 similar to UP|Q9M3Y5 (Q9M3Y5) 25.7 kDa protein, partial (... 24 5.3
TC14889 UP|Q7PI53 (Q7PI53) ENSANGP00000023856 (Fragment), partia... 24 5.3
TC15685 homologue to PIR|E86216|E86216 protein T23G18.10 [import... 24 5.3
TC11276 weakly similar to UP|HDA1_CHICK (P56517) Histone deacety... 24 5.3
AV766560 24 5.3
>TC8722 similar to UP|Q9LU67 (Q9LU67) Phosphatidylserine decarboxylase,
partial (14%)
Length = 609
Score = 28.1 bits (61), Expect = 0.28
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = +1
Query: 55 HDIVLTLCHMEMLFPLSFFTVSVHLILSLFFLWLL 89
HD+VLT HME+L +FF SVHL S ++ LL
Sbjct: 280 HDLVLT--HMEILILCNFFE-SVHLHYSRHYVRLL 375
>TC11947
Length = 712
Score = 26.6 bits (57), Expect = 0.81
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 29 VLNELSSFFRQLCGKVLNVKALDKLQHDIVLTL 61
+LN L F+++CG L + L L +++VL L
Sbjct: 273 ILNVLIHIFQRVCGFALRLMTLWSLTYELVLIL 371
>TC20204 weakly similar to UP|Q7NK30 (Q7NK30) Glr1650 protein, partial (7%)
Length = 564
Score = 25.4 bits (54), Expect = 1.8
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = +2
Query: 62 CHMEMLFPLSF----FTVSVHLILSLFFLWLLV 90
C EML P+SF F +S+++ + F WL +
Sbjct: 419 CLFEMLCPISF*IIPFVLSLYIYMRGLFSWLSI 517
>TC15270 similar to PIR|T01713|T01713 ribosomal protein L5, organellar -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(40%)
Length = 568
Score = 25.4 bits (54), Expect = 1.8
Identities = 15/52 (28%), Positives = 24/52 (45%)
Frame = -2
Query: 21 SLPDEVSAVLNELSSFFRQLCGKVLNVKALDKLQHDIVLTLCHMEMLFPLSF 72
SL ++ + +E + + + L V L L HD LCH + FP +F
Sbjct: 444 SLTKRINVITSEWNKVYNIM---FLGVTTLVPLPHDFASKLCHF-LTFPFAF 301
>TC10764
Length = 555
Score = 25.0 bits (53), Expect = 2.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 53 LQHDIVLTLCHMEMLFPLSFFTVSVHLILSLFFLWLL 89
L +D L C+ + + P SF S H FF+WL+
Sbjct: 328 LVNDCRLLACYFDFIEP-SFVCTSSHSSEVFFFVWLI 435
>TC18568
Length = 719
Score = 25.0 bits (53), Expect = 2.4
Identities = 17/40 (42%), Positives = 24/40 (59%)
Frame = -1
Query: 51 DKLQHDIVLTLCHMEMLFPLSFFTVSVHLILSLFFLWLLV 90
D +H ++L L ML+P T+ + LIL LFFL LL+
Sbjct: 266 DHFKH-LILGLISQGMLYP----TLHLLLILILFFLLLLL 162
>BP049336
Length = 470
Score = 24.6 bits (52), Expect = 3.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 1 LKSHDFHILMEQFLPLAMWGSLP 23
LKSHDF +LM F+ + W P
Sbjct: 93 LKSHDFMLLMF*FMNCSCWVFAP 25
>TC16740 similar to UP|Q9SIJ8 (Q9SIJ8) Expressed protein (RD2 protein),
partial (90%)
Length = 765
Score = 24.3 bits (51), Expect = 4.0
Identities = 15/43 (34%), Positives = 22/43 (50%), Gaps = 2/43 (4%)
Frame = -3
Query: 31 NELSSFFRQLC--GKVLNVKALDKLQHDIVLTLCHMEMLFPLS 71
+E +++Q C G N K + HD+ LTLC FPL+
Sbjct: 283 HE*GGWYQQACKGG*GPNQKHVYCWDHDLWLTLCPFLFFFPLT 155
>BP050565
Length = 542
Score = 24.3 bits (51), Expect = 4.0
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -1
Query: 29 VLNELSSFFRQLCGKVLNVKALDKLQHDIVLTLCHMEMLFPLSFFTVSVH 78
+L+E+ L G+ L+ DKLQ ++ L ++ M+F + +T H
Sbjct: 344 LLSEIKEETIGLHGEQLSAVVCDKLQKNLNSDLKNLAMIFKNTAYTEGFH 195
>BP069608
Length = 494
Score = 24.3 bits (51), Expect = 4.0
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -2
Query: 43 KVLNVKALDKLQHDIVLTLCHMEMLFPLSFFTV 75
K +K +DKL ++ H + L FFT+
Sbjct: 382 KHAKIKGVDKLSRKRIIMTLHAATILALLFFTI 284
>AV411854
Length = 427
Score = 24.3 bits (51), Expect = 4.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 26 VSAVLNELSSFFRQLCGKVLNVKALDKLQHDIVLT 60
++A+L +LSSF LC +D L+ +LT
Sbjct: 227 LNALLEKLSSFQLNLCASFRRYPVIDYLEKSPLLT 123
>BP084209
Length = 502
Score = 23.9 bits (50), Expect = 5.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 57 IVLTLCHMEMLFPLSFFTVSVHLIL 81
I + CH +L PLS F + L L
Sbjct: 287 IAVLFCHSHVLLPLSLFLSPLFLFL 361
>BP048740
Length = 504
Score = 23.9 bits (50), Expect = 5.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 7 HILMEQFLPLAMWGSLPDEVS 27
H L+EQF L WG P ++S
Sbjct: 258 HNLIEQFRMLRSWGPFPMKMS 196
>BP065022
Length = 489
Score = 23.9 bits (50), Expect = 5.3
Identities = 14/47 (29%), Positives = 25/47 (52%)
Frame = +3
Query: 21 SLPDEVSAVLNELSSFFRQLCGKVLNVKALDKLQHDIVLTLCHMEML 67
++ E + L E S+FF + + N+K+ + L I T+ HM+ L
Sbjct: 315 NMEQEQTTFLGESSTFFSVMEKRNANIKSCNLLNLQI*GTVRHMKKL 455
>TC19568
Length = 549
Score = 23.9 bits (50), Expect = 5.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 7 HILMEQFLPLAMWGSLPDEVS 27
H L+EQF L WG P ++S
Sbjct: 338 HNLIEQFRMLRSWGPFPMKMS 400
>TC9429 similar to UP|Q9M3Y5 (Q9M3Y5) 25.7 kDa protein, partial (33%)
Length = 718
Score = 23.9 bits (50), Expect = 5.3
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +2
Query: 29 VLNELSSFFRQLCGKVLNVKALDKLQHDIVLTLCHMEMLFPLSFFTVSVH 78
+L+E+ L G+ L+ DKLQ ++ L ++ M+F + +T H
Sbjct: 107 LLSEIKEETIGLHGEHLSTVVCDKLQKNLNSDLKNLAMIFKNTAYTEGFH 256
>TC14889 UP|Q7PI53 (Q7PI53) ENSANGP00000023856 (Fragment), partial (18%)
Length = 598
Score = 23.9 bits (50), Expect = 5.3
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 61 LCHMEMLFPLSFFTVSVHLIL-SLFFLWL 88
LC+ +L+P FF+ V L+ FF WL
Sbjct: 437 LCYFLLLYPS*FFSFLVFLLH*KSFFAWL 523
>TC15685 homologue to PIR|E86216|E86216 protein T23G18.10 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(10%)
Length = 677
Score = 23.9 bits (50), Expect = 5.3
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 44 VLNVKALDKLQHDIVLTLCHMEMLFPLSFFTVSVHLILSLFFLWL 88
VLN K ++KL+ LF F S ++SLFF WL
Sbjct: 217 VLNFKFVNKLRR-----------LFQFHFGLYSYFGLVSLFFCWL 318
>TC11276 weakly similar to UP|HDA1_CHICK (P56517) Histone deacetylase 1
(HD1), partial (5%)
Length = 636
Score = 23.9 bits (50), Expect = 5.3
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Frame = -2
Query: 67 LFPLSFFTV----SVHLILSLFFLWLL 89
LF L FFT+ + L L FFLW L
Sbjct: 119 LFFLGFFTLWLIFLLFLFLGFFFLWFL 39
>AV766560
Length = 398
Score = 23.9 bits (50), Expect = 5.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 57 IVLTLCHMEMLFPLSFFTVSVHLILSLFFLWLLV 90
++L +C + FPL T + L L FF+ L++
Sbjct: 169 LLLCMCKLIECFPLECITSQISLYL*NFFIILIL 68
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.333 0.145 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,952,575
Number of Sequences: 28460
Number of extensions: 23397
Number of successful extensions: 326
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of query: 90
length of database: 4,897,600
effective HSP length: 66
effective length of query: 24
effective length of database: 3,019,240
effective search space: 72461760
effective search space used: 72461760
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 48 (23.1 bits)
Lotus: description of TM0206b.6