BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0206b.5
(199 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF177539 125 4e-30
TC12848 GB|AAA37921.1|553942|MUSIGF2RA insulin-like growth facto... 66 4e-12
TC18517 weakly similar to UP|AAQ82688 (AAQ82688) Epa4p, partial ... 32 0.096
TC9653 similar to UP|Q9LN63 (Q9LN63) F18O14.7 (At1g19350/F18O14_... 28 0.82
TC8551 similar to PIR|T52138|T52138 eukaryotic cap-binding prote... 27 1.8
TC17474 similar to UP|Q8VXT1 (Q8VXT1) Protein kinase 2, partial ... 26 4.0
TC15625 25 6.9
AV772161 25 9.0
TC10207 homologue to UP|Q8LG48 (Q8LG48) Contains similarity to p... 25 9.0
TC14534 similar to UP|Q9LWB4 (Q9LWB4) Ribosomal protein L1, part... 25 9.0
>BF177539
Length = 327
Score = 125 bits (315), Expect = 4e-30
Identities = 61/104 (58%), Positives = 71/104 (67%), Gaps = 5/104 (4%)
Frame = +3
Query: 32 FERSSIEGKIICPCPRCEFRKRQTRDEVYDHLICKQLPKGYTFWFDHGET-----MNNSP 86
FERSS++G I+CPC C FRK TRD VY+HLI KQ P+ YTFWFDHGET NN
Sbjct: 15 FERSSVDGAILCPCGLCNFRKWLTRDVVYEHLIIKQFPRNYTFWFDHGETHEVEIENNCT 194
Query: 87 QNVPNSVEQTMVDEDPIQNMINGAFGVDMHHGEESNEDVPDGEG 130
NV + + DEDPI+NM+N AFGVDMH +SNE V GEG
Sbjct: 195 ANVSSLGPNIVNDEDPIRNMVNEAFGVDMHRDNDSNEGVR*GEG 326
>TC12848 GB|AAA37921.1|553942|MUSIGF2RA insulin-like growth factor 2
receptor {Mus musculus;}, partial (23%)
Length = 664
Score = 66.2 bits (160), Expect = 4e-12
Identities = 30/47 (63%), Positives = 33/47 (69%), Gaps = 3/47 (6%)
Frame = +3
Query: 32 FERSSIEGK---IICPCPRCEFRKRQTRDEVYDHLICKQLPKGYTFW 75
F R +EGK IICPC +C F KR TRDEV DHL+CK P GYTFW
Sbjct: 309 FVRYWLEGKRGLIICPCDKCGFNKRFTRDEVLDHLLCKPFPDGYTFW 449
>TC18517 weakly similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (4%)
Length = 493
Score = 31.6 bits (70), Expect = 0.096
Identities = 21/66 (31%), Positives = 29/66 (43%)
Frame = -2
Query: 79 GETMNNSPQNVPNSVEQTMVDEDPIQNMINGAFGVDMHHGEESNEDVPDGEGVIPDATQE 138
GE N+ N ++T++D N A + GEE E+ DG+GV PD E
Sbjct: 474 GENERNNGNNPERGEDETVIDGAGEDNDRAVAEEEEEEPGEEDGEEDDDGDGV-PDEGDE 298
Query: 139 RHETRD 144
E D
Sbjct: 297 EDEEED 280
>TC9653 similar to UP|Q9LN63 (Q9LN63) F18O14.7 (At1g19350/F18O14_4) (BZR2),
partial (40%)
Length = 604
Score = 28.5 bits (62), Expect = 0.82
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 110 AFGVDMHHGEESNEDVPDGEGVIPD--ATQERHETRDFYDLARDGEQPL 156
AFG G+ES E V +GEG P+ A E H D + GE L
Sbjct: 97 AFGRSNFGGDESAEAVVEGEGE*PEEGAASESHRGEDLHRA*GSGELQL 243
>TC8551 similar to PIR|T52138|T52138 eukaryotic cap-binding protein
[imported] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (71%)
Length = 1167
Score = 27.3 bits (59), Expect = 1.8
Identities = 11/31 (35%), Positives = 19/31 (60%)
Frame = +2
Query: 15 RNTMAYEEGVKRFIDFAFERSSIEGKIICPC 45
R +YE+ +K+ +DF S++EG +C C
Sbjct: 266 RTQTSYEDNIKKIVDF----STVEGFWVCYC 346
>TC17474 similar to UP|Q8VXT1 (Q8VXT1) Protein kinase 2, partial (30%)
Length = 560
Score = 26.2 bits (56), Expect = 4.0
Identities = 11/23 (47%), Positives = 13/23 (55%)
Frame = +2
Query: 159 GCTKYSKLSFLVKLYHIKTLCGV 181
GC YS+L FL +Y LC V
Sbjct: 377 GCLSYSRLVFLWIIYQFHYLCSV 445
>TC15625
Length = 594
Score = 25.4 bits (54), Expect = 6.9
Identities = 9/17 (52%), Positives = 11/17 (63%)
Frame = +1
Query: 42 ICPCPRCEFRKRQTRDE 58
+CPCPR FR T+ E
Sbjct: 523 VCPCPRGIFRSPDTKPE 573
>AV772161
Length = 523
Score = 25.0 bits (53), Expect = 9.0
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Frame = +2
Query: 120 ESNEDVP-DGEGVIPDATQERHETRDFY---DLARDGEQP 155
E+ E +P D EGVI + + + H+TR + D + G +P
Sbjct: 326 ETREKLPSDFEGVISEKSSQSHKTRGNHKPQDTGKHGSRP 445
>TC10207 homologue to UP|Q8LG48 (Q8LG48) Contains similarity to
poly(A)-binding protein II, partial (8%)
Length = 521
Score = 25.0 bits (53), Expect = 9.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 30 FAFERSSIEGKIICPCPR 47
F +R + GK+I PCPR
Sbjct: 261 FLHQRILLHGKLITPCPR 208
>TC14534 similar to UP|Q9LWB4 (Q9LWB4) Ribosomal protein L1, partial (28%)
Length = 671
Score = 25.0 bits (53), Expect = 9.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 167 SFLVKLYHIKTLCGVTDKAMTMILELLHD 195
SFLV +H + CG + + + +L+HD
Sbjct: 524 SFLVINFHFTSTCGASSACVVV*HDLVHD 610
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.138 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,735,227
Number of Sequences: 28460
Number of extensions: 51200
Number of successful extensions: 202
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of query: 199
length of database: 4,897,600
effective HSP length: 86
effective length of query: 113
effective length of database: 2,450,040
effective search space: 276854520
effective search space used: 276854520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)
Lotus: description of TM0206b.5