TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0206b.2
         (121 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP047893                                                              142  2e-35
TC12009 similar to PIR|T52589|T52589 ribose-phosphate diphosphok...    86  2e-18
TC10031 similar to UP|Q43382 (Q43382) PSI type II chlorophyll a/...    27  0.95
AV765037                                                               25  2.8
BP046586                                                               25  3.6
TC9322 UP|P2A_MEDSA (Q06009) Serine/threonine protein phosphatas...    25  4.7
TC17524 similar to UP|O04897 (O04897) Fructokinase  , partial (12%)    25  4.7
TC13175                                                                24  6.2

>BP047893 
          Length = 514

 Score =  142 bits (358), Expect = 2e-35
 Identities = 69/70 (98%), Positives = 70/70 (99%)
 Frame = -2

Query: 52  RRVVW*TCCFLAQLSSPTQGFEQFTAIYALHCLFVASFALVPPFFPTGSFE*KEEGDVTT 111
           RRVVW*TCCFLAQLSSPTQGFEQFTAIYALHCLFVASFALVPPFFPTGSF+*KEEGDVTT
Sbjct: 312 RRVVW*TCCFLAQLSSPTQGFEQFTAIYALHCLFVASFALVPPFFPTGSFK*KEEGDVTT 133

Query: 112 AFTLARMLSN 121
           AFTLARMLSN
Sbjct: 132 AFTLARMLSN 103


>TC12009 similar to PIR|T52589|T52589 ribose-phosphate diphosphokinase
           [imported] -                Arabidopsis thaliana
           {Arabidopsis thaliana;} , partial (42%)
          Length = 526

 Score = 85.5 bits (210), Expect = 2e-18
 Identities = 47/62 (75%), Positives = 49/62 (78%), Gaps = 1/62 (1%)
 Frame = +1

Query: 61  FLAQLSSPTQGFEQFTAIYALHCLFVASFALVPPFFPTGSFE-*KEEGDVTTAFTLARML 119
           FLA  SSP Q FEQ + IYAL  LFVASF LV PFFPTGSFE  +EEGDV TAFTLARML
Sbjct: 256 FLASFSSPAQVFEQLSVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTLARML 435

Query: 120 SN 121
           SN
Sbjct: 436 SN 441



 Score = 37.4 bits (85), Expect = 7e-04
 Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = +3

Query: 39  FC**VSKSMYE*CRRVVW*TCCF--LAQLSSPT 69
           FC* V + +Y+*CRR  W*TCC   + QL SP+
Sbjct: 189 FC*WVPEPIYK*CRRASW*TCCLFGIIQLPSPS 287


>TC10031 similar to UP|Q43382 (Q43382) PSI type II chlorophyll a/b-binding
           protein, partial (34%)
          Length = 604

 Score = 26.9 bits (58), Expect = 0.95
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 3/20 (15%)
 Frame = +2

Query: 59  CCFLA---QLSSPTQGFEQF 75
           CCFL    Q++ PTQGF+ F
Sbjct: 374 CCFLI*GLQMTQPTQGFDSF 433


>AV765037 
          Length = 584

 Score = 25.4 bits (54), Expect = 2.8
 Identities = 11/32 (34%), Positives = 17/32 (52%)
 Frame = +1

Query: 67  SPTQGFEQFTAIYALHCLFVASFALVPPFFPT 98
           +P Q  ++   +  +HCLF  +  LV   FPT
Sbjct: 157 APQQEDKKMIGVSVIHCLFHRALRLVLLLFPT 252


>BP046586 
          Length = 338

 Score = 25.0 bits (53), Expect = 3.6
 Identities = 15/51 (29%), Positives = 21/51 (40%), Gaps = 12/51 (23%)
 Frame = -1

Query: 58  TCCFLAQLSSPTQGFEQFTAIYALH-----------CLFVASF-ALVPPFF 96
           TC F   + +P    E    +  LH           C+ ++ F  LVPPFF
Sbjct: 215 TCIFCMHMKAPVLSSEILAGVMLLHVCTYCYYLLPSCISLSPFFLLVPPFF 63


>TC9322 UP|P2A_MEDSA (Q06009) Serine/threonine protein phosphatase PP2A
           catalytic subunit  , partial (16%)
          Length = 627

 Score = 24.6 bits (52), Expect = 4.7
 Identities = 7/18 (38%), Positives = 13/18 (71%)
 Frame = +3

Query: 78  IYALHCLFVASFALVPPF 95
           +++  CLF + F ++PPF
Sbjct: 462 LFSFTCLFFSCFIIIPPF 515


>TC17524 similar to UP|O04897 (O04897) Fructokinase  , partial (12%)
          Length = 581

 Score = 24.6 bits (52), Expect = 4.7
 Identities = 13/40 (32%), Positives = 18/40 (44%)
 Frame = +1

Query: 59  CCFLAQLSSPTQGFEQFTAIYALHCLFVASFALVPPFFPT 98
           CCFL Q     +GF  +         + + F L  PFFP+
Sbjct: 292 CCFLLQ----KRGFSPYWFSQVRSAHYQSFFCLCMPFFPS 399


>TC13175 
          Length = 591

 Score = 24.3 bits (51), Expect = 6.2
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 4/22 (18%)
 Frame = +2

Query: 72  FEQFTAIYAL----HCLFVASF 89
           F QF A Y +    HCLFV +F
Sbjct: 86  FNQFMAFYGIRGNFHCLFVLNF 151


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.370    0.164    0.657 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,423,187
Number of Sequences: 28460
Number of extensions: 34846
Number of successful extensions: 420
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of query: 121
length of database: 4,897,600
effective HSP length: 79
effective length of query: 42
effective length of database: 2,649,260
effective search space: 111268920
effective search space used: 111268920
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.8 bits)
S2: 49 (23.5 bits)