TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0206b.1
         (35 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CN825332                                                               59  2e-10
TC15215 similar to UP|CYP4_ARATH (P34791) Peptidyl-prolyl cis-tr...    58  5e-10
TC13932 similar to UP|Q38901 (Q38901) Cytosolic cyclophilin  (Pe...    55  2e-09
TC14183 homologue to UP|Q8W435 (Q8W435) CYP1  (Peptidyl-prolyl c...    54  6e-09
TC11878 similar to UP|O49605 (O49605)  (Cyclophilin-like protein...    44  7e-06
BP050662                                                               29  0.25
BP036096                                                               24  6.1

>CN825332 
          Length = 612

 Score = 58.9 bits (141), Expect = 2e-10
 Identities = 27/30 (90%), Positives = 28/30 (93%)
 Frame = +3

Query: 6   FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
           F +KHVGPGVLSMANAGPNTNGSQFFI TV
Sbjct: 516 FSLKHVGPGVLSMANAGPNTNGSQFFICTV 605


>TC15215 similar to UP|CYP4_ARATH (P34791) Peptidyl-prolyl cis-trans
           isomerase, chloroplast precursor  (PPIase) (Rotamase)
           (Cyclophilin) (Cyclosporin A-binding protein) , partial
           (45%)
          Length = 654

 Score = 57.8 bits (138), Expect = 5e-10
 Identities = 26/30 (86%), Positives = 28/30 (92%)
 Frame = +2

Query: 6   FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
           F +KHVGPGVLSMANAGPNT+GSQFFI TV
Sbjct: 110 FALKHVGPGVLSMANAGPNTHGSQFFICTV 199


>TC13932 similar to UP|Q38901 (Q38901) Cytosolic cyclophilin
           (Peptidyl-prolyl cis-trans isomerase) (PPIase)
           (Rotamase) , partial (96%)
          Length = 580

 Score = 55.5 bits (132), Expect = 2e-09
 Identities = 24/29 (82%), Positives = 26/29 (88%)
 Frame = +3

Query: 6   FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
           F +KH GPG+LSMANAGPNTNGSQFFI T
Sbjct: 327 FKLKHTGPGILSMANAGPNTNGSQFFICT 413


>TC14183 homologue to UP|Q8W435 (Q8W435) CYP1  (Peptidyl-prolyl cis-trans
           isomerase) (PPIase) (Rotamase) , complete
          Length = 913

 Score = 54.3 bits (129), Expect = 6e-09
 Identities = 24/29 (82%), Positives = 25/29 (85%)
 Frame = +1

Query: 6   FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
           FV KH GPG+LSMANAGP TNGSQFFI T
Sbjct: 319 FVKKHTGPGILSMANAGPGTNGSQFFICT 405


>TC11878 similar to UP|O49605 (O49605)  (Cyclophilin-like protein)
          (Peptidyl-prolyl cis-trans isomerase) (PPIase)
          (Rotamase) , partial (47%)
          Length = 504

 Score = 43.9 bits (102), Expect = 7e-06
 Identities = 19/30 (63%), Positives = 26/30 (86%)
 Frame = +3

Query: 6  FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
          F +KH   GV+SMAN+GP+++GSQFFI+TV
Sbjct: 63 FRIKHSHAGVVSMANSGPDSHGSQFFITTV 152


>BP050662 
          Length = 498

 Score = 28.9 bits (63), Expect = 0.25
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = -3

Query: 21  AGPNTNGSQFFISTV 35
           AGP+T GSQFFI+TV
Sbjct: 496 AGPDTXGSQFFITTV 452


>BP036096 
          Length = 487

 Score = 24.3 bits (51), Expect = 6.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 2   FNTFFVVKHVGPGVLSMANAGPNTN 26
           + T F V H  PG  +++N  PN +
Sbjct: 236 WRTHFFVTHTAPGEKTLSNKEPNNH 310


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 493,928
Number of Sequences: 28460
Number of extensions: 2639
Number of successful extensions: 17
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of query: 35
length of database: 4,897,600
effective HSP length: 11
effective length of query: 24
effective length of database: 4,584,540
effective search space: 110028960
effective search space used: 110028960
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)