TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0199.9
         (56 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15950 similar to UP|VATC_ARATH (Q9SDS7) Vacuolar ATP synthase ...    82  2e-17
TC19342                                                                26  1.4
BP041900                                                               26  1.4
TC14495 UP|O22618 (O22618) Aspartate aminotransferase  , complete      26  1.8
AV409453                                                               25  2.4
BP042612                                                               24  5.3
TC14094 homologue to emb|X02559.1|MIOBRN26 Oenothera berteriana ...    24  6.9
TC12023                                                                24  6.9
TC9685                                                                 23  9.1
AU089239                                                               23  9.1

>TC15950 similar to UP|VATC_ARATH (Q9SDS7) Vacuolar ATP synthase subunit C
           (V-ATPase C subunit) (Vacuolar proton pump C subunit)
          , partial (48%)
          Length = 562

 Score = 82.0 bits (201), Expect(2) = 2e-17
 Identities = 36/38 (94%), Positives = 38/38 (99%)
 Frame = +1

Query: 5  WWVVSLPVHNSASELWNRLQQNVSKHSFDTPLYRFNIP 42
          +WVVSLPVHNSASELWN+LQQNVSKHSFDTPLYRFNIP
Sbjct: 31 YWVVSLPVHNSASELWNQLQQNVSKHSFDTPLYRFNIP 144



 Score = 20.4 bits (41), Expect(2) = 2e-17
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +2

Query: 43  ISGSEP*TLSAM 54
           IS SEP*TLS++
Sbjct: 146 ISASEP*TLSSL 181


>TC19342 
          Length = 548

 Score = 26.2 bits (56), Expect = 1.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 12  VHNSASELWNRLQQNVSKHS 31
           +HN+  E WNRLQ  + K S
Sbjct: 380 IHNNRDEGWNRLQGPIHKRS 439


>BP041900 
          Length = 282

 Score = 26.2 bits (56), Expect = 1.4
 Identities = 13/45 (28%), Positives = 24/45 (52%), Gaps = 2/45 (4%)
 Frame = -2

Query: 1   GAVVWWVVSLPVHNSASELWNRLQ--QNVSKHSFDTPLYRFNIPI 43
           GA+ WW+ +  VH   + ++ RL+     +K   D  ++ F +PI
Sbjct: 227 GAIKWWIGNAAVHGKFATVFARLRLPNYDAKGVSDMGVHAFIVPI 93


>TC14495 UP|O22618 (O22618) Aspartate aminotransferase  , complete
          Length = 2030

 Score = 25.8 bits (55), Expect = 1.8
 Identities = 11/30 (36%), Positives = 19/30 (62%)
 Frame = -3

Query: 8   VSLPVHNSASELWNRLQQNVSKHSFDTPLY 37
           +S P +NSA  L N  Q ++ ++S  +PL+
Sbjct: 489 LSAPSNNSAVALLNAAQPSIGRYSLFSPLF 400


>AV409453 
          Length = 402

 Score = 25.4 bits (54), Expect = 2.4
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 13 HNSASELWNRLQQNVSKHSFDTPLYR 38
          H+S+S+L   L  + S  SFD+PL+R
Sbjct: 69 HSSSSKLSISLSGSPSSASFDSPLHR 146


>BP042612 
          Length = 351

 Score = 24.3 bits (51), Expect = 5.3
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 22  RLQQNVSKHSFDT 34
           RL QN+SKH +DT
Sbjct: 207 RLHQNLSKHMYDT 245


>TC14094 homologue to emb|X02559.1|MIOBRN26 Oenothera berteriana
           mitochondrial gene for 26S ribosomal RNA, partial (83%)
          Length = 3140

 Score = 23.9 bits (50), Expect = 6.9
 Identities = 7/27 (25%), Positives = 14/27 (50%)
 Frame = -2

Query: 6   WVVSLPVHNSASELWNRLQQNVSKHSF 32
           W    P+HN ++E W +  ++ +   F
Sbjct: 361 WFFHHPIHN*SNETWRKRSEHFAAEEF 281


>TC12023 
          Length = 553

 Score = 23.9 bits (50), Expect = 6.9
 Identities = 12/28 (42%), Positives = 17/28 (59%)
 Frame = +1

Query: 9   SLPVHNSASELWNRLQQNVSKHSFDTPL 36
           +LPV +  + L N L  NV++ S  TPL
Sbjct: 466 TLPVSHMTAMLCNALIPNVNRFSAPTPL 549


>TC9685 
          Length = 919

 Score = 23.5 bits (49), Expect = 9.1
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 13 HNSASELWNRLQQNVSKHSFDTPLYRFNIPISG 45
          H+S++ L   L    S H F  PL  F    SG
Sbjct: 21 HSSSTRLLLML*NQSSSHEFHNPLAPFTFACSG 119


>AU089239 
          Length = 500

 Score = 23.5 bits (49), Expect = 9.1
 Identities = 6/16 (37%), Positives = 13/16 (80%)
 Frame = -1

Query: 6  WVVSLPVHNSASELWN 21
          W+++LP+H  A++ W+
Sbjct: 95 WILNLPIHFVANQPWS 48


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.327    0.135    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,156,342
Number of Sequences: 28460
Number of extensions: 12461
Number of successful extensions: 104
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of query: 56
length of database: 4,897,600
effective HSP length: 32
effective length of query: 24
effective length of database: 3,986,880
effective search space: 95685120
effective search space used: 95685120
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)