TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0199.8
         (105 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CN825055                                                               26  1.2
TC19147                                                                26  1.2
TC12220                                                                26  1.2
TC14844 similar to UP|Q8L553 (Q8L553) SCARECROW transcriptional ...    25  1.6
TC8174 similar to GB|AAO24559.1|27808558|BT003127 At5g39890 {Ara...    25  2.0
BI418774                                                               25  2.6
TC8448 weakly similar to UP|WSC4_YEAST (P38739) Cell wall integr...    24  3.5
TC16201 similar to UP|Q42810 (Q42810) GmCK2p  , partial (33%)          24  3.5
BP068691                                                               24  4.5
BP056069                                                               24  4.5
TC8661 weakly similar to UP|O81348 (O81348) Symbiotic ammonium t...    24  4.5
TC19524 weakly similar to UP|SNAA_SOLTU (Q9M5P8) Alpha-soluble N...    24  4.5
BP052884                                                               24  4.5
TC15254                                                                23  5.9
BP079006                                                               23  7.7

>CN825055 
          Length = 593

 Score = 25.8 bits (55), Expect = 1.2
 Identities = 16/54 (29%), Positives = 26/54 (47%)
 Frame = -2

Query: 44  RFDSSYDTANKYIDSYADLHK*VSHRNPRGNICGVDFICIFNPNQALKPLKTSW 97
           R  S+ D  +  I ++ D    ++  +P  N      I IFNP   L P+KT++
Sbjct: 565 RLPSTLDLVSVSITAHEDTLNNLT--SPSSNRLSQKVIVIFNPGSKLLPIKTTF 410


>TC19147 
          Length = 471

 Score = 25.8 bits (55), Expect = 1.2
 Identities = 21/49 (42%), Positives = 24/49 (48%)
 Frame = -1

Query: 48  SYDTANKYIDSYADLHK*VSHRNPRGNICGVDFICIFNPNQALKPLKTS 96
           +YDT NKY+DS              GNI   D I I N +  LKPLK S
Sbjct: 336 AYDTCNKYMDS--------------GNI--TDQISISNGD--LKPLKVS 244


>TC12220 
          Length = 473

 Score = 25.8 bits (55), Expect = 1.2
 Identities = 11/17 (64%), Positives = 15/17 (87%)
 Frame = +3

Query: 50  DTANKYIDSYADLHK*V 66
           +TA+KYIDS A +H+*V
Sbjct: 186 ETASKYIDSGAHIHR*V 236


>TC14844 similar to UP|Q8L553 (Q8L553) SCARECROW transcriptional
           regulator-like, partial (49%)
          Length = 1051

 Score = 25.4 bits (54), Expect = 1.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 37  YKFLRTQRFDSSYDTANKYIDSYADLH 63
           YKF  T    S YD+ N ++ SY DLH
Sbjct: 929 YKFYMT--CCSIYDSYNSFVYSYLDLH 1003


>TC8174 similar to GB|AAO24559.1|27808558|BT003127 At5g39890 {Arabidopsis
           thaliana;}, partial (24%)
          Length = 1091

 Score = 25.0 bits (53), Expect = 2.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 72  RGNICGVDFICIFNPN 87
           RGN C +  +C+ NPN
Sbjct: 122 RGNYCSMCSVCLHNPN 75


>BI418774 
          Length = 554

 Score = 24.6 bits (52), Expect = 2.6
 Identities = 11/31 (35%), Positives = 18/31 (57%)
 Frame = +3

Query: 75  ICGVDFICIFNPNQALKPLKTSWAEAVLTII 105
           ICG++ ICI++P    K   TS +  +L  +
Sbjct: 108 ICGIEGICIYSPRVFEKTGITSKSNLLLATV 200


>TC8448 weakly similar to UP|WSC4_YEAST (P38739) Cell wall integrity and
           stress response component 4 precursor, partial (5%)
          Length = 1049

 Score = 24.3 bits (51), Expect = 3.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 66  VSHRNPRGNICGVDFICIFNPNQAL 90
           +S  N     C +DF+CI N N A+
Sbjct: 507 LSRVNSFDTACPIDFVCIKNINAAI 433


>TC16201 similar to UP|Q42810 (Q42810) GmCK2p  , partial (33%)
          Length = 600

 Score = 24.3 bits (51), Expect = 3.5
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
 Frame = +2

Query: 48 SYDTANKYIDSYADLHK*VSHRNPRGNICGVD----FICIFNPNQALKP 92
          +YD AN + +  AD H    H        G++    FI I+  +Q  KP
Sbjct: 20 AYDLANHFCEMVADYHSDTPHVLDYSKYPGLEERQRFIRIYLSSQGKKP 166


>BP068691 
          Length = 500

 Score = 23.9 bits (50), Expect = 4.5
 Identities = 10/23 (43%), Positives = 12/23 (51%)
 Frame = +2

Query: 25  CSDWNGSKLGHVYKFLRTQRFDS 47
           C  WN  K GH Y   R + F+S
Sbjct: 182 CQGWNLQKEGHCY*RQRDEGFES 250


>BP056069 
          Length = 373

 Score = 23.9 bits (50), Expect = 4.5
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +1

Query: 26 SDWNGSKLGHVY 37
          +DW GSK+G++Y
Sbjct: 7  NDWQGSKIGNLY 42


>TC8661 weakly similar to UP|O81348 (O81348) Symbiotic ammonium
           transporter, partial (34%)
          Length = 1007

 Score = 23.9 bits (50), Expect = 4.5
 Identities = 10/23 (43%), Positives = 12/23 (51%)
 Frame = -2

Query: 25  CSDWNGSKLGHVYKFLRTQRFDS 47
           C  WN  K GH Y   R + F+S
Sbjct: 472 CQGWNLQKEGHCY*RQRDEGFES 404


>TC19524 weakly similar to UP|SNAA_SOLTU (Q9M5P8) Alpha-soluble NSF
           attachment protein (Alpha-SNAP)
           (N-ethylmaleimide-sensitive factor attachment protein,
           alpha), partial (34%)
          Length = 600

 Score = 23.9 bits (50), Expect = 4.5
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +3

Query: 16  RFKSMSIVLCSDWNGSKLGHVYKFLRT----QRFDSSYDTANKYIDS 58
           R  + S  L   W+  K G V  F+R      + DS YD AN Y+D+
Sbjct: 270 RKSANSFKLGKSWD--KAGSV--FIRAAECHMKTDSKYDAANAYVDA 398


>BP052884 
          Length = 502

 Score = 23.9 bits (50), Expect = 4.5
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = +1

Query: 75  ICGVDFICIFNPNQALKPLKT 95
           +C   ++CI N    +KP+++
Sbjct: 418 VCAATWVCIHNEQNVIKPVRS 480


>TC15254 
          Length = 581

 Score = 23.5 bits (49), Expect = 5.9
 Identities = 10/34 (29%), Positives = 17/34 (49%)
 Frame = -1

Query: 2   YQILQYVESYQKENRFKSMSIVLCSDWNGSKLGH 35
           Y+ +    +YQ ++R K  S +LC   + S   H
Sbjct: 413 YKTIHIQPNYQLQHRLKRQSFMLCKTCSPSTSRH 312


>BP079006 
          Length = 388

 Score = 23.1 bits (48), Expect = 7.7
 Identities = 11/24 (45%), Positives = 15/24 (61%)
 Frame = +2

Query: 37  YKFLRTQRFDSSYDTANKYIDSYA 60
           YKFLR+    + Y   + YI+SYA
Sbjct: 92  YKFLRSINSLTVYAILSMYINSYA 163


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.327    0.139    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,891,215
Number of Sequences: 28460
Number of extensions: 21860
Number of successful extensions: 146
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of query: 105
length of database: 4,897,600
effective HSP length: 81
effective length of query: 24
effective length of database: 2,592,340
effective search space: 62216160
effective search space used: 62216160
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.7 bits)