BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0199.3
(462 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC15939 123 7e-29
AV415521 77 6e-15
BP082023 72 3e-13
TC11928 69 2e-12
BP055161 61 3e-10
TC11226 58 4e-09
BP034215 45 3e-05
AU089487 35 0.001
TC9519 38 0.004
BP033226 35 0.034
TC10693 similar to UP|Q93VA8 (Q93VA8) At1g76010/T4O12_22, partia... 32 0.29
TC14264 similar to UP|Q84NF9 (Q84NF9) Histone H1 (Fragment), par... 30 0.84
TC14551 similar to GB|AAL05900.1|15777879|AY055100 AT3g15640/MSJ... 30 1.1
TC19666 30 1.1
TC17252 similar to UP|O04237 (O04237) Transcription factor, part... 28 2.4
CN825745 28 2.4
NP459444 rac GTPase activating protein 3 [Lotus japonicus] 28 4.2
AV425810 27 5.5
TC8582 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetyla... 27 7.1
AV771384 27 7.1
>TC15939
Length = 841
Score = 123 bits (308), Expect = 7e-29
Identities = 58/108 (53%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Frame = +2
Query: 331 ADALKQNEQPNRVTFAPYNMGDHWVLLVIYTSEFAIEYFDSFDGEPTDDVHMKNIFDAGL 390
+DAL NE PNR+ PYN G HWVL+VI S+ +I Y+DS G+P MKN+FD+GL
Sbjct: 2 SDALLANENPNRIFSTPYNCGGHWVLIVINASDASITYYDSMRGDPRTYTAMKNLFDSGL 181
Query: 391 MIYHANSNDV-PKKKVKYIKWRKMKCPKQKNLTDCGYYVLKYMRDIII 437
M Y A V PKKK I W +KCP Q N DCGYYVL+YMR +I+
Sbjct: 182 MTYRAQREHVLPKKKSNTINWSSVKCPHQMNDVDCGYYVLRYMRSLIL 325
>AV415521
Length = 384
Score = 77.0 bits (188), Expect = 6e-15
Identities = 36/84 (42%), Positives = 57/84 (67%)
Frame = +1
Query: 224 ASSKDKLQNCKFVWAYARSVLKSEDLLKIPMPENILNTNTEEEFVEQIGEEQVNEIYYHT 283
+ ++KL NC+++WA+A+++L K+ MP ++ N E V+ IG EQ E+ +H
Sbjct: 145 SGKQEKLPNCQYIWAHAKNLLALGKQEKVEMPFSLFNC----EQVDFIGAEQFKEVTHHQ 312
Query: 284 KLSASVICVYMRFLYSEVLVQNQL 307
K+SASV+CVY+RFLY +VL+ N L
Sbjct: 313 KISASVVCVYIRFLYDQVLLPNNL 384
>BP082023
Length = 485
Score = 71.6 bits (174), Expect = 3e-13
Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Frame = -3
Query: 352 DHWVLLVIYTSEF--AIEYFDSFDGEPTDDVHMKNIFDAGLMIYHANSN-DVPKKKVKYI 408
+HWVL+VI + I Y DS G P D MK IF+ L +Y A+ +PK K I
Sbjct: 471 NHWVLVVINPNSKLDTIYYLDSMHGTPRDWPGMKEIFNIALYMYRASRRVSLPKAKANKI 292
Query: 409 KWRKMKCPKQKNLTDCGYYVLKYMRDIII 437
W ++CP+Q N DCG+YV+++M+ +I+
Sbjct: 291 NWVVVECPQQTNGIDCGFYVMRFMKKLIL 205
>TC11928
Length = 571
Score = 68.9 bits (167), Expect = 2e-12
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +1
Query: 362 SEFAIEYFDSFDGEPTDDVHMKNIFDAGLMIYHANSN-DVPKKKVKYIKWRKMKCPKQKN 420
SE I Y D G+P MK +FD L IY ++ VP + +I+W +KCP+ +
Sbjct: 7 SEGKIYYLDPLHGDPRHXPEMKTLFDTALKIYRVTTSATVPGARRSHIQWDHIKCPRPTH 186
Query: 421 LTDCGYYVLKYMRDII 436
DCGYY+LK+M+DII
Sbjct: 187 NIDCGYYILKFMKDII 234
>BP055161
Length = 504
Score = 61.2 bits (147), Expect = 3e-10
Identities = 28/57 (49%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Frame = -1
Query: 382 MKNIFDAGLMIYHANSNDVPKKKVKY--IKWRKMKCPKQKNLTDCGYYVLKYMRDII 436
MK +FD +MIY AN ND K++ + KW +KCP Q N DCGYYVL ++++II
Sbjct: 477 MKEMFDNAMMIYRANCND---KRITWSKAKWNTIKCPAQTNYIDCGYYVLSFLKEII 316
>TC11226
Length = 601
Score = 57.8 bits (138), Expect = 4e-09
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Frame = +2
Query: 384 NIFDAGLMIYHANSN-DVPKKKVKYIKWRKMKCPKQKNLTDCGYYVLKYMRDII 436
++FD L ++ + S VP+ K YI W ++CP+Q N DCGYYV+K+M+D I
Sbjct: 5 SMFDTALKVHRSTSGMSVPQPKPIYISWNIIECPRQTNSVDCGYYVMKFMKDTI 166
>BP034215
Length = 524
Score = 44.7 bits (104), Expect = 3e-05
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = -1
Query: 413 MKCPKQKNLTDCGYYVLKYMRDIIIAGDSQTLQEVVILVIKYIVFIEFIS 462
+KCP+Q N DCGYYV+K+M+DII +++ KY +F+S
Sbjct: 335 VKCPRQTNSVDCGYYVMKFMKDII-------THPPLVIPTKYFEDCQFVS 207
>AU089487
Length = 439
Score = 34.7 bits (78), Expect(2) = 0.001
Identities = 17/37 (45%), Positives = 20/37 (53%)
Frame = +3
Query: 368 YFDSFDGEPTDDVHMKNIFDAGLMIYHANSNDVPKKK 404
Y DS G+P M N+FD+GLM Y A V KK
Sbjct: 279 YNDSMRGDPRTYTAMXNLFDSGLMTYRAQREHVLPKK 389
Score = 24.3 bits (51), Expect(2) = 0.001
Identities = 9/21 (42%), Positives = 12/21 (56%)
Frame = +2
Query: 400 VPKKKVKYIKWRKMKCPKQKN 420
V +K+ I W +KCP Q N
Sbjct: 377 VAQKESNTINWSSVKCPHQMN 439
>TC9519
Length = 635
Score = 37.7 bits (86), Expect = 0.004
Identities = 12/28 (42%), Positives = 20/28 (70%)
Frame = +1
Query: 409 KWRKMKCPKQKNLTDCGYYVLKYMRDII 436
+W +KCP + DCGYYVL ++++I+
Sbjct: 118 QWNTIKCPAPTDEIDCGYYVLSFLKEIV 201
>BP033226
Length = 494
Score = 34.7 bits (78), Expect = 0.034
Identities = 14/21 (66%), Positives = 16/21 (75%)
Frame = -3
Query: 416 PKQKNLTDCGYYVLKYMRDII 436
P Q N DCGYYV+K M+DII
Sbjct: 372 PCQTNSVDCGYYVMKLMKDII 310
>TC10693 similar to UP|Q93VA8 (Q93VA8) At1g76010/T4O12_22, partial (43%)
Length = 564
Score = 31.6 bits (70), Expect = 0.29
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 51 EGINACILYLATPTHRKVASGTMYNNSIDTL---HSCPLPSDHVKVSVEFAIEGE 102
E + +L T H + + T+ N +DT + PLP+D VK + +F EGE
Sbjct: 353 EPLEEGLLPWETTRHVSMITITLSKNELDTASVGYQPPLPADQVKAATDFDYEGE 517
>TC14264 similar to UP|Q84NF9 (Q84NF9) Histone H1 (Fragment), partial (76%)
Length = 1277
Score = 30.0 bits (66), Expect = 0.84
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 4/95 (4%)
Frame = +2
Query: 131 KRLVSTMTPASSDNNHKATSRAKGITAVQAKKPAGQVKKP----AERANKPVAQGEKVHE 186
K+LV+ N+ K S AK A A KPA KKP A+ KP A+ +
Sbjct: 386 KKLVAAGKLVKVKNSFKLPS-AKSSAAAAASKPAAAKKKPQPAAAKSKPKPKAKAKPAAA 562
Query: 187 QAKKQVDKGKKDVGQGKRAPGQAKKQADKGTEIQP 221
K + K + +AK A + +P
Sbjct: 563 ATKAKAKPAPKSKAAATKTTAKAKPAAAAKPKAKP 667
>TC14551 similar to GB|AAL05900.1|15777879|AY055100 AT3g15640/MSJ11_4
{Arabidopsis thaliana;}, partial (59%)
Length = 813
Score = 29.6 bits (65), Expect = 1.1
Identities = 22/90 (24%), Positives = 39/90 (42%), Gaps = 2/90 (2%)
Frame = +2
Query: 24 KKADVQPGDSPCYSGEG--SCPPSPVILPEGINACILYLATPTHRKVASGTMYNNSIDTL 81
K+ D++ SPC G + P P++LP +L +A P H V S +
Sbjct: 44 KRCDLRT--SPCGGGFSLLTSKP*PLVLPNLFPPSLLLIAPPFHSSVTSLILLR*KKKVE 217
Query: 82 HSCPLPSDHVKVSVEFAIEGEEKSYIPVPI 111
P+ + H + ++ +EG + I P+
Sbjct: 218 DVMPIATGHEREELQANLEGRDILEINHPV 307
>TC19666
Length = 521
Score = 29.6 bits (65), Expect = 1.1
Identities = 15/47 (31%), Positives = 21/47 (43%), Gaps = 1/47 (2%)
Frame = -2
Query: 378 DDVHMKNIFDAGLMIYHAN-SNDVPKKKVKYIKWRKMKCPKQKNLTD 423
+ +H K D +I H N + KK+ + KW KC K TD
Sbjct: 406 NSIH*KKTMDPSCLILHRNLERKISKKQGVWCKWNSYKCVG*KPFTD 266
>TC17252 similar to UP|O04237 (O04237) Transcription factor, partial (21%)
Length = 492
Score = 28.5 bits (62), Expect = 2.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 163 PAGQVKKPAERANKPVAQGEKVHEQAKKQVDKGKKDVGQG 202
PA Q KPA+ +KP+ + V E +K + +G + G+G
Sbjct: 319 PAAQQNKPAQLPSKPLPPTQAVRE-SKNEASRGGRGGGRG 435
>CN825745
Length = 664
Score = 28.5 bits (62), Expect = 2.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 349 NMGDHWVLLVIYTSEFAIEYFDS 371
N HW L+VI E+ I YFDS
Sbjct: 307 NDSGHWYLMVISIVEYVIYYFDS 375
>NP459444 rac GTPase activating protein 3 [Lotus japonicus]
Length = 1300
Score = 27.7 bits (60), Expect = 4.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 255 PENILNTNTEEEFVEQIGEEQVNEI 279
PE +L NTEEEFV+ + + + E+
Sbjct: 530 PEQVLECNTEEEFVQLVKQLKPTEL 604
>AV425810
Length = 433
Score = 27.3 bits (59), Expect = 5.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 167 VKKPAERANKPVAQGEKVHEQAKKQVDKGK 196
+KKP E+ N V G + HEQ Q +GK
Sbjct: 360 LKKPLEQKNHKVECGTQAHEQKAIQSHQGK 271
>TC8582 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (65%)
Length = 1341
Score = 26.9 bits (58), Expect = 7.1
Identities = 24/74 (32%), Positives = 32/74 (42%)
Frame = +1
Query: 142 SDNNHKATSRAKGITAVQAKKPAGQVKKPAERANKPVAQGEKVHEQAKKQVDKGKKDVGQ 201
SD+ S + T AKK K+P E A+K G+K ++ D GKK+V
Sbjct: 619 SDDESDDESDDEEETPTPAKKVDQGKKRPNESASKTPVSGKKAKNATPEKPD-GKKNVHT 795
Query: 202 GKRAPGQAKKQADK 215
P KKQ K
Sbjct: 796 ATPHP---KKQDGK 828
>AV771384
Length = 359
Score = 26.9 bits (58), Expect = 7.1
Identities = 10/23 (43%), Positives = 15/23 (64%)
Frame = +2
Query: 389 GLMIYHANSNDVPKKKVKYIKWR 411
G+ ++HA + V +KYIKWR
Sbjct: 104 GMKLFHAKGDAVLPCVIKYIKWR 172
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.133 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,406,429
Number of Sequences: 28460
Number of extensions: 99021
Number of successful extensions: 520
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of query: 462
length of database: 4,897,600
effective HSP length: 93
effective length of query: 369
effective length of database: 2,250,820
effective search space: 830552580
effective search space used: 830552580
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0199.3