TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0199.2
         (160 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP036062                                                               30  0.20
TC15349 homologue to UP|143C_SOYBN (Q96452) 14-3-3-like protein ...    27  1.3
TC12706 UP|Q7X9C0 (Q7X9C0) NIN-like protein 2, complete                26  3.7
TC13056 similar to UP|IF38_MEDTR (Q9XHM1) Eukaryotic translation...    25  4.9
TC14221 similar to GB|AAP37784.1|30725524|BT008425 At4g24690 {Ar...    25  6.4
TC18732 similar to UP|Q84LB8 (Q84LB8) Glycolate oxidase  , parti...    25  8.3

>BP036062 
          Length = 512

 Score = 30.0 bits (66), Expect = 0.20
 Identities = 9/37 (24%), Positives = 24/37 (64%)
 Frame = -3

Query: 92  NDPFILASQAEQVFFVTDPADKKWSMVQLSNKINDNK 128
           N+P +++S  +++F  + P   +W + Q++++  D+K
Sbjct: 219 NNPTLISSTCQRIFSTSHPTTSRWKINQMNHQQQDSK 109


>TC15349 homologue to UP|143C_SOYBN (Q96452) 14-3-3-like protein C (SGF14C),
            complete
          Length = 1149

 Score = 27.3 bits (59), Expect = 1.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 37   HGSMSYFGVIELIWELDYTIFQVPVFGCRWVD 68
            H S+S++  +   W L+  +  + +FGC  VD
Sbjct: 992  HVSLSFYACLCYYWRLELRLHWLVLFGCNLVD 1087


>TC12706 UP|Q7X9C0 (Q7X9C0) NIN-like protein 2, complete
          Length = 3814

 Score = 25.8 bits (55), Expect = 3.7
 Identities = 18/89 (20%), Positives = 38/89 (42%)
 Frame = +3

Query: 65   RWVDNNNGVRIDDLGFTQVDLNRVGYKNDPFILASQAEQVFFVTDPADKKWSMVQLSNKI 124
            +WV NN+G+R+++L    V  +   + +D   +    ++V  +  P     +   L+   
Sbjct: 2709 KWVLNNDGLRVENLKCNTVGQSSGSFTDDEMGIDVDNDEVVELNHP-----TCSSLTGSS 2873

Query: 125  NDNKDYDENQQKSVDKEDDPFKGISHSLD 153
            N +         S    ++  KG S ++D
Sbjct: 2874 NGSSPMIHGSSSSSQSFENQSKGKSTTVD 2960


>TC13056 similar to UP|IF38_MEDTR (Q9XHM1) Eukaryotic translation initiation
           factor 3 subunit 8 (eIF3 p110) (eIF3c), partial (12%)
          Length = 607

 Score = 25.4 bits (54), Expect = 4.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 125 NDNKDYDENQQKSVDKEDDPFKGISHSLDDDLIED 159
           N NK Y EN+  S D +DD  K +  S  D   E+
Sbjct: 224 NSNKYYAENEGNSDDSDDDQ-KRVVRSAKDKRFEE 325


>TC14221 similar to GB|AAP37784.1|30725524|BT008425 At4g24690 {Arabidopsis
           thaliana;}, partial (12%)
          Length = 827

 Score = 25.0 bits (53), Expect = 6.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 75  IDDLGFTQVDLNRVGYKNDPFIL 97
           +D++GF QVDLN+   +N+ + L
Sbjct: 342 LDEMGFKQVDLNQEILRNNGYNL 410


>TC18732 similar to UP|Q84LB8 (Q84LB8) Glycolate oxidase  , partial (60%)
          Length = 678

 Score = 24.6 bits (52), Expect = 8.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 100 QAEQVFFVTDPADKKWSMVQLSN 122
           Q + VF+++ P  KKWS+    N
Sbjct: 201 QCKSVFYISLPTTKKWSVHSKGN 133


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,506,301
Number of Sequences: 28460
Number of extensions: 30206
Number of successful extensions: 143
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of query: 160
length of database: 4,897,600
effective HSP length: 83
effective length of query: 77
effective length of database: 2,535,420
effective search space: 195227340
effective search space used: 195227340
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)