TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0197.8
         (242 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP046665                                                               87  2e-18
AU089042                                                               69  9e-13
TC8084 similar to UP|PIF1_YEAST (P07271) DNA repair and recombin...    60  8e-12
TC15490 weakly similar to UP|Q9LTU4 (Q9LTU4) Helicase-like prote...    46  2e-10
TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination p...    58  1e-09
TC11129 weakly similar to UP|PDA6_MEDSA (P38661) Probable protei...    42  1e-04
TC9886 similar to UP|Q94K08 (Q94K08) Nucleotide pyrophosphatase-...    38  0.001
TC8555 similar to GB|AAM62930.1|21553837|AY085712 phytochelatin ...    29  0.83
BP033976                                                               27  2.4
BP030644                                                               25  9.2
BP063249                                                               25  9.2

>BP046665 
          Length = 524

 Score = 87.4 bits (215), Expect = 2e-18
 Identities = 45/82 (54%), Positives = 52/82 (62%)
 Frame = -1

Query: 67  GMSNHKLLLKVDIPIMLLRNIDQAAGLCNGTRLIVVELGERYIGATVITGTNANDKVHIS 126
           G+ NHK+ LK   PIMLLRNI QA G CNGTRLIV +LG   I ATVIT TN  D + I 
Sbjct: 509 GIPNHKITLKEGAPIMLLRNIYQAVGFCNGTRLIVADLGTNVIKATVIT*TNIGDDIFIP 330

Query: 127 IMDLVPSDPNFQLNSEEDSFQL 148
            MD+VPSD  +    E   F +
Sbjct: 329 RMDMVPSDSGYPFKFERRQFPI 264


>AU089042 
          Length = 191

 Score = 68.6 bits (166), Expect = 9e-13
 Identities = 32/61 (52%), Positives = 45/61 (73%)
 Frame = +3

Query: 74  LLKVDIPIMLLRNIDQAAGLCNGTRLIVVELGERYIGATVITGTNANDKVHISIMDLVPS 133
           +LK  +P+ML+ N+  + GLCNGTRLIV  LG   IGAT+++GT+    V+IS+M+L PS
Sbjct: 6   VLKXGVPVMLMXNLXISTGLCNGTRLIVDYLGPNVIGATILSGTHIGXVVYISMMNLXPS 185

Query: 134 D 134
           D
Sbjct: 186 D 188


>TC8084 similar to UP|PIF1_YEAST (P07271) DNA repair and recombination
           protein PIF1, mitochondrial precursor, partial (4%)
          Length = 560

 Score = 60.1 bits (144), Expect(2) = 8e-12
 Identities = 31/62 (50%), Positives = 38/62 (61%)
 Frame = +1

Query: 87  IDQAAGLCNGTRLIVVELGERYIGATVITGTNANDKVHISIMDLVPSDPNFQLNSEEDSF 146
           I +   LCNGTRLIVV+LG   I ATVITGTN  D + I  +D+VPSD  +    E   F
Sbjct: 43  IQKFENLCNGTRLIVVDLGTYVIKATVITGTNIGDDIFIPRLDMVPSDSGYPFKFERR*F 222

Query: 147 QL 148
            +
Sbjct: 223 PI 228



 Score = 25.4 bits (54), Expect(2) = 8e-12
 Identities = 24/79 (30%), Positives = 37/79 (46%)
 Frame = +2

Query: 145 SFQLQYALR*P*TKANDKHYLRWGSSFRDPSSLMVSYM*LSLEYAQERVLNFEYWNSQAN 204
           SF+   AL+* * K    HY      F    S MVS M LS    QE+  N+  W  +  
Sbjct: 218 SFRSVCALQ*L*IKVKVSHYPTLAYIFLALYSHMVSCMLLSPG*DQEKDSNY*CWMRKKK 397

Query: 205 NRPVL*M*CLRKFLEMFDV 223
            + +   *   K+L+++++
Sbjct: 398 *QTLQRT*FTEKYLKIYEI 454


>TC15490 weakly similar to UP|Q9LTU4 (Q9LTU4) Helicase-like protein, partial
           (8%)
          Length = 634

 Score = 46.2 bits (108), Expect(2) = 2e-10
 Identities = 22/25 (88%), Positives = 24/25 (96%)
 Frame = +1

Query: 81  IMLLRNIDQAAGLCNGTRLIVVELG 105
           IMLLRNI QA+GLCNGTRLIVV+LG
Sbjct: 58  IMLLRNIVQASGLCNGTRLIVVDLG 132



 Score = 34.3 bits (77), Expect(2) = 2e-10
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +2

Query: 109 IGATVITGTNANDKVHISIMDLVPSDPNFQLNSE 142
           I  TVITGT+  D + I  MD+VPSD ++    E
Sbjct: 137 IQVTVITGTHIGDDISIPRMDMVPSDSSYPFKFE 238


>TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination protein
           DMC1/LIM15 homolog, partial (12%)
          Length = 628

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 30/62 (48%), Positives = 38/62 (60%)
 Frame = +1

Query: 87  IDQAAGLCNGTRLIVVELGERYIGATVITGTNANDKVHISIMDLVPSDPNFQLNSEEDSF 146
           I +   LC+GTRLIVV+LG   I ATVITGTN  D + I  +D+VPSD  +    E   F
Sbjct: 151 IQKFENLCHGTRLIVVDLGTYVIKATVITGTNIGDDIFIPRLDMVPSDSGYPFKFERR*F 330

Query: 147 QL 148
            +
Sbjct: 331 PI 336


>TC11129 weakly similar to UP|PDA6_MEDSA (P38661) Probable protein disulfide
           isomerase A6 precursor  (P5) , partial (7%)
          Length = 600

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 19/46 (41%), Positives = 30/46 (64%)
 Frame = +2

Query: 12  PTLKAVEMINTYMLGMIAAPEHEYLSSNSALRSYEHSEI*GEWFTT 57
           PTL++VE +N +ML ++     EYLSS++  +  E +E+   WFTT
Sbjct: 458 PTLESVEKVNEFMLDLLPGNTTEYLSSDTTCKYDEDTELQS*WFTT 595


>TC9886 similar to UP|Q94K08 (Q94K08) Nucleotide pyrophosphatase-like
           protein, partial (50%)
          Length = 685

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 17/20 (85%), Positives = 17/20 (85%)
 Frame = -2

Query: 223 VYNTISFIYFIFLLIYYYTI 242
           VYNTISFIY IFL IYYY I
Sbjct: 684 VYNTISFIYSIFLFIYYYMI 625


>TC8555 similar to GB|AAM62930.1|21553837|AY085712 phytochelatin
            synthetase-like protein {Arabidopsis thaliana;} , partial
            (83%)
          Length = 1776

 Score = 28.9 bits (63), Expect = 0.83
 Identities = 23/70 (32%), Positives = 33/70 (46%)
 Frame = +1

Query: 102  VELGERYIGATVITGTNANDKVHISIMDLVPSDPNFQLNSEEDSFQLQYALR*P*TKAND 161
            V+L  +      IT TN N +++ S  +LV   PNF  ++  + F  QY    P    ND
Sbjct: 976  VKLNYKEYWRVKITITNFNYRMNYSQWNLVVQHPNF--DNLTEIFSFQYKSLTPYEGLND 1149

Query: 162  KHYLRWGSSF 171
               L WG+ F
Sbjct: 1150 TGML-WGTKF 1176


>BP033976 
          Length = 551

 Score = 27.3 bits (59), Expect = 2.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 120 NDKVHISIMDLVPSDPNFQLNSEEDSFQLQYALR 153
           N+K HI+I   +P D     N EE + + QY  R
Sbjct: 25  NEKNHINIAHQIPQDKT*TTNQEESN*KYQYHCR 126


>BP030644 
          Length = 288

 Score = 25.4 bits (54), Expect = 9.2
 Identities = 7/18 (38%), Positives = 14/18 (76%)
 Frame = -3

Query: 223 VYNTISFIYFIFLLIYYY 240
           V+   S++YF+FL ++Y+
Sbjct: 55  VFGMTSYLYFLFLFLFYF 2


>BP063249 
          Length = 515

 Score = 25.4 bits (54), Expect = 9.2
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = -3

Query: 193 VLNFEYWNSQANNRPVL*M*CLRKFLEMFDVYNTISFIYFIFLLIY 238
           V+  ++W  +   R    +  + +F+ +F +   +SF++FI+ LIY
Sbjct: 270 VMGLQWWGLKR*GRLQGVICFIFRFMFLFTLEILLSFLFFIYALIY 133


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.341    0.150    0.478 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,702,174
Number of Sequences: 28460
Number of extensions: 42825
Number of successful extensions: 352
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of query: 242
length of database: 4,897,600
effective HSP length: 88
effective length of query: 154
effective length of database: 2,393,120
effective search space: 368540480
effective search space used: 368540480
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 54 (25.4 bits)