BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0197.6
(158 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CN825120 278 2e-76
TC14831 homologue to UP|P93499 (P93499) DnaJ-like protein (Fragm... 181 7e-47
TC13524 similar to UP|O48678 (O48678) F3I6.4 protein, partial (19%) 62 4e-11
AV411199 58 7e-10
TC8101 similar to UP|O24074 (O24074) DNAJ-like protein, partial ... 57 1e-09
AV767621 57 1e-09
BP035098 56 3e-09
TC16999 similar to UP|Q9T024 (Q9T024) DNAJ-like protein (AT4g391... 55 6e-09
BP039305 55 7e-09
TC16983 similar to UP|Q9ZSY2 (Q9ZSY2) ALTERED response to gravit... 55 7e-09
TC15224 homologue to UP|Q9SWB5 (Q9SWB5) Seed maturation protein ... 54 2e-08
TC8761 homologue to UP|Q9SWB5 (Q9SWB5) Seed maturation protein P... 52 5e-08
BP059356 34 5e-06
TC12876 45 6e-06
TC9507 similar to UP|Q8VZB6 (Q8VZB6) DnaJ-like protein, partial ... 39 5e-04
AV775648 38 7e-04
TC19451 similar to GB|AAM65667.1|21593700|AY088122 J8-like prote... 35 0.006
BP037331 35 0.008
TC19536 similar to UP|BAC84247 (BAC84247) DnaJ protein family-li... 32 0.039
BP052094 32 0.039
>CN825120
Length = 667
Score = 278 bits (712), Expect = 2e-76
Identities = 142/158 (89%), Positives = 148/158 (92%)
Frame = +3
Query: 1 MLSPSFTTATTFSGQIATSPTGHVRSRPVLAFATATEADYRPTPSLHLSTHGDSGMASCS 60
MLSPSFTTATTFSGQIATSP G+VRSRPV+AFATATEADYRPTPSL+LSTHGD MASC+
Sbjct: 24 MLSPSFTTATTFSGQIATSPIGYVRSRPVIAFATATEADYRPTPSLYLSTHGDGDMASCT 203
Query: 61 SSLYEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHAAYSTLSDPE 120
S LYEILGIAAAASDQEIKAAYRRLARVRHP+VAAVDRKDSS +EFMKIHAAYSTLSDPE
Sbjct: 204 S-LYEILGIAAAASDQEIKAAYRRLARVRHPDVAAVDRKDSSTNEFMKIHAAYSTLSDPE 380
Query: 121 KRASYDRSMNRRRRPLTAAVTSRFSGYKGRNWETDQCW 158
KRASYDRSMNRRRR LTA VT R SGYKGRN ETDQCW
Sbjct: 381 KRASYDRSMNRRRRSLTATVTPRLSGYKGRN*ETDQCW 494
>TC14831 homologue to UP|P93499 (P93499) DnaJ-like protein (Fragment),
partial (63%)
Length = 851
Score = 181 bits (458), Expect = 7e-47
Identities = 99/160 (61%), Positives = 116/160 (71%), Gaps = 5/160 (3%)
Frame = +3
Query: 4 PSFTTATTFSGQIATSPTGHVRSRPVLAFATATE-----ADYRPTPSLHLSTHGDSGMAS 58
PS +A +G +P VRSRPV++FATAT AD R T + ++
Sbjct: 57 PSSLSAANLTGNTVATPPRRVRSRPVVSFATATATATSTADARSTWTEQPRPSSTYLISP 236
Query: 59 CSSSLYEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHAAYSTLSD 118
CSS LYEILGI A AS QEIKAAYRRLARV HP+VAA+DRK+SSAD+FMKIHAAYSTLSD
Sbjct: 237 CSS-LYEILGIPAGASSQEIKAAYRRLARVCHPDVAAIDRKNSSADDFMKIHAAYSTLSD 413
Query: 119 PEKRASYDRSMNRRRRPLTAAVTSRFSGYKGRNWETDQCW 158
PEKRA+YDRS+ RR+RP++ AV FSGY RNWETDQCW
Sbjct: 414 PEKRATYDRSLFRRQRPMSTAVV--FSGYSSRNWETDQCW 527
>TC13524 similar to UP|O48678 (O48678) F3I6.4 protein, partial (19%)
Length = 485
Score = 62.4 bits (150), Expect = 4e-11
Identities = 30/63 (47%), Positives = 45/63 (70%)
Frame = +1
Query: 64 YEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHAAYSTLSDPEKRA 123
YE+LG++ +++DQEIK AYR++A HP+ A D K +AD F ++ +Y+ LSDP+KR
Sbjct: 298 YEVLGVSRSSTDQEIKTAYRKMALKYHPDKNANDPK--AADMFKEVTFSYNILSDPDKRR 471
Query: 124 SYD 126
YD
Sbjct: 472 QYD 480
>AV411199
Length = 423
Score = 58.2 bits (139), Expect = 7e-10
Identities = 31/64 (48%), Positives = 41/64 (63%)
Frame = +2
Query: 64 YEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHAAYSTLSDPEKRA 123
YEIL + A+D+E+K AYRRLA HP+ D K+ + +F I +Y LSDP+KRA
Sbjct: 74 YEILEVDHHATDEELKKAYRRLAMKWHPD-KNPDNKNDAETKFKLISESYEVLSDPQKRA 250
Query: 124 SYDR 127
YDR
Sbjct: 251 IYDR 262
>TC8101 similar to UP|O24074 (O24074) DNAJ-like protein, partial (90%)
Length = 1737
Score = 57.4 bits (137), Expect = 1e-09
Identities = 29/76 (38%), Positives = 44/76 (57%)
Frame = +1
Query: 52 GDSGMASCSSSLYEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHA 111
G + S ++ YE+LG+ +AS+ EIK AYR+ A HP+ K ++F ++
Sbjct: 154 GRAPRKSDNTKFYEVLGVPKSASEDEIKKAYRKAAMKNHPD------KGGDPEKFKELGQ 315
Query: 112 AYSTLSDPEKRASYDR 127
AY LSDPEK+ YD+
Sbjct: 316 AYEVLSDPEKKELYDQ 363
>AV767621
Length = 560
Score = 57.0 bits (136), Expect = 1e-09
Identities = 29/64 (45%), Positives = 43/64 (66%)
Frame = +1
Query: 64 YEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHAAYSTLSDPEKRA 123
Y+IL + ASD ++K AYR+LA HP+ ++K++ A +F +I AY LSDP+KRA
Sbjct: 67 YKILQVDRGASDDDLKKAYRKLAMKWHPDKNPNNKKEAEA-KFKQISEAYDVLSDPQKRA 243
Query: 124 SYDR 127
YD+
Sbjct: 244 VYDQ 255
>BP035098
Length = 458
Score = 56.2 bits (134), Expect = 3e-09
Identities = 31/62 (50%), Positives = 38/62 (61%), Gaps = 8/62 (12%)
Frame = -1
Query: 105 EFMKIHAAYSTLSDPEKRASYDRSMN-----RRRR---PLTAAVTSRFSGYKGRNWETDQ 156
+F++I AY TLSDP RA+YD S++ RRRR PLT + R Y R WETDQ
Sbjct: 443 DFIQIRNAYETLSDPSARATYDMSLSAANGGRRRRFSSPLT--MNRRAGSYPTRRWETDQ 270
Query: 157 CW 158
CW
Sbjct: 269 CW 264
>TC16999 similar to UP|Q9T024 (Q9T024) DNAJ-like protein
(AT4g39150/T22F8_50), partial (35%)
Length = 648
Score = 55.1 bits (131), Expect = 6e-09
Identities = 29/68 (42%), Positives = 42/68 (61%)
Frame = +3
Query: 61 SSLYEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHAAYSTLSDPE 120
S+ Y++LG+ AS +IK AY AR+ HP+ D K +A+ F + AY LSDPE
Sbjct: 123 SAYYDVLGVNVDASAADIKKAYYIKARIVHPDKNPGDPK--AAENFQMLGEAYQVLSDPE 296
Query: 121 KRASYDRS 128
KR +YD++
Sbjct: 297 KREAYDKN 320
>BP039305
Length = 555
Score = 54.7 bits (130), Expect = 7e-09
Identities = 29/65 (44%), Positives = 42/65 (64%)
Frame = +3
Query: 58 SCSSSLYEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHAAYSTLS 117
+ S+ Y LG+ +A+ +EIKAAYRRLAR HP+V ++ + D+F +I AY LS
Sbjct: 369 AASADYYNTLGVPKSATVKEIKAAYRRLARQYHPDVY---KEPGATDKFKEISNAYEVLS 539
Query: 118 DPEKR 122
D +KR
Sbjct: 540 DDKKR 554
>TC16983 similar to UP|Q9ZSY2 (Q9ZSY2) ALTERED response to gravity (ARG1
protein), partial (42%)
Length = 716
Score = 54.7 bits (130), Expect = 7e-09
Identities = 27/63 (42%), Positives = 40/63 (62%)
Frame = +2
Query: 64 YEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHAAYSTLSDPEKRA 123
YE+L ++ ++DQEIK AYR+LA HP+ +++ F ++ +YS LSDPEKR
Sbjct: 245 YEVLSVSRDSTDQEIKTAYRKLALKYHPDKNV--NNPEASELFKEVAYSYSILSDPEKRR 418
Query: 124 SYD 126
YD
Sbjct: 419 QYD 427
Score = 25.0 bits (53), Expect = 6.2
Identities = 10/21 (47%), Positives = 12/21 (56%)
Frame = -2
Query: 38 ADYRPTPSLHLSTHGDSGMAS 58
+DYR S HL THG +S
Sbjct: 235 SDYRGRRSFHLGTHGSPSFSS 173
>TC15224 homologue to UP|Q9SWB5 (Q9SWB5) Seed maturation protein PM37,
partial (71%)
Length = 1031
Score = 53.5 bits (127), Expect = 2e-08
Identities = 29/76 (38%), Positives = 42/76 (55%)
Frame = +3
Query: 52 GDSGMASCSSSLYEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHA 111
G + S S+ YEILG+ AS ++K AY++ A HP+ K ++F ++
Sbjct: 144 GRAPKKSDSTRYYEILGVPKNASQDDLKKAYKKAAIKNHPD------KGGDPEKFKELAQ 305
Query: 112 AYSTLSDPEKRASYDR 127
AY LSDPEKR YD+
Sbjct: 306 AYEVLSDPEKREIYDQ 353
>TC8761 homologue to UP|Q9SWB5 (Q9SWB5) Seed maturation protein PM37,
partial (74%)
Length = 1050
Score = 52.0 bits (123), Expect = 5e-08
Identities = 26/69 (37%), Positives = 40/69 (57%)
Frame = +3
Query: 58 SCSSSLYEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHAAYSTLS 117
S S+ Y+ILG++ AS ++K AY++ A HP+ K ++F ++ AY L+
Sbjct: 105 SDSTRYYDILGVSKTASQDDLKKAYKKAAIKNHPD------KGGDPEKFKELAQAYEVLN 266
Query: 118 DPEKRASYD 126
DPEKR YD
Sbjct: 267 DPEKREIYD 293
>BP059356
Length = 436
Score = 34.3 bits (77), Expect(2) = 5e-06
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = +1
Query: 89 RHPNVAAVDRKDSSADEFMKIHAAYSTLSDPEKRASYDR 127
++PN ++K++ A+ F KI AY LSDP+KRA YD+
Sbjct: 187 KNPN----NKKEAEAN-FKKISEAYDVLSDPQKRAVYDQ 288
Score = 30.4 bits (67), Expect(2) = 5e-06
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 64 YEILGIAAAASDQEIKAAYRRLARVRHP 91
Y++L + +A D ++K AYR+LA HP
Sbjct: 99 YKVLQVDRSAKDDDLKKAYRKLAMKWHP 182
>TC12876
Length = 820
Score = 45.1 bits (105), Expect = 6e-06
Identities = 23/71 (32%), Positives = 37/71 (51%), Gaps = 4/71 (5%)
Frame = -1
Query: 60 SSSLYEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRK----DSSADEFMKIHAAYST 115
S+ Y +LG+ ++ E++ AY++LA HP+ + + + +F I AYS
Sbjct: 241 SNDFYAVLGLNKECTESELRNAYKKLALKWHPDRCSASGNLKFVEEAKKKFQSIQEAYSV 62
Query: 116 LSDPEKRASYD 126
LSD KR YD
Sbjct: 61 LSDANKRLMYD 29
>TC9507 similar to UP|Q8VZB6 (Q8VZB6) DnaJ-like protein, partial (40%)
Length = 905
Score = 38.5 bits (88), Expect = 5e-04
Identities = 25/101 (24%), Positives = 52/101 (50%), Gaps = 8/101 (7%)
Frame = +1
Query: 64 YEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHAAYSTLSDPEKRA 123
YEILG+ + + ++++ +YR+L+ HP+ ++ + + F + A+ L + E +
Sbjct: 523 YEILGLEKSCTVEDVRKSYRKLSLKVHPD---KNKAPGAEEAFKAVSKAFQCLGNEESKR 693
Query: 124 SY-----DRSMNRRR---RPLTAAVTSRFSGYKGRNWETDQ 156
Y D S+ RR RP A + ++GY +++ D+
Sbjct: 694 KYDLSGEDESVYERRAAARPGPGAARA-YNGYYEADFDADE 813
>AV775648
Length = 371
Score = 38.1 bits (87), Expect = 7e-04
Identities = 25/82 (30%), Positives = 38/82 (45%), Gaps = 1/82 (1%)
Frame = +1
Query: 46 LHLSTHGDSGMASCSSS-LYEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSAD 104
L L+T S C Y+++G++ A+ EIK AY +L+ HP+ + S
Sbjct: 88 LILTTISPSHAIYCDEDDCYDLVGVSQNANSSEIKKAYYKLSLKHHPD---TNPDPESKK 258
Query: 105 EFMKIHAAYSTLSDPEKRASYD 126
+K+ AY L D R YD
Sbjct: 259 LLVKVANAYEILKDEATREQYD 324
>TC19451 similar to GB|AAM65667.1|21593700|AY088122 J8-like protein
{Arabidopsis thaliana;}, partial (35%)
Length = 480
Score = 35.0 bits (79), Expect = 0.006
Identities = 23/64 (35%), Positives = 32/64 (49%), Gaps = 3/64 (4%)
Frame = +2
Query: 56 MASCSSSL---YEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHAA 112
M CSSSL Y+ L + AS E+K A+R LA HP+V + +F I+ A
Sbjct: 200 MICCSSSLMDSYKTLRVQPGASQTEVKKAFRHLALQYHPDVC---QGSKCGVQFHHINEA 370
Query: 113 YSTL 116
Y +
Sbjct: 371 YDVV 382
>BP037331
Length = 405
Score = 34.7 bits (78), Expect = 0.008
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +3
Query: 62 SLYEILGIAAAASDQEIKAAYRRLARVRHPNV 93
S YE L + A +++IK AYRRLA+ HP+V
Sbjct: 288 SPYETLELERDADEEQIKIAYRRLAKFYHPDV 383
>TC19536 similar to UP|BAC84247 (BAC84247) DnaJ protein family-like protein,
partial (27%)
Length = 597
Score = 32.3 bits (72), Expect = 0.039
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +3
Query: 64 YEILGI----AAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHAAYSTLSDP 119
Y +LG+ A SD EIK+A+R A+ HP+ +R+ + A +F ++ ++Y +
Sbjct: 18 YSVLGLDRFRQAPYSDAEIKSAFRTKAKEHHPDQNQNNREVAEA-KFKEVMSSYEAIKQE 194
Query: 120 EK 121
K
Sbjct: 195 RK 200
>BP052094
Length = 503
Score = 32.3 bits (72), Expect = 0.039
Identities = 24/93 (25%), Positives = 46/93 (48%), Gaps = 11/93 (11%)
Frame = +3
Query: 4 PSFTTATTFSGQIATSPTGHVRSRPVLAFATATEADYRPTPSLHLSTH-----------G 52
P ++ +G+ A+S + +V +R ++F A + + SLH+ + G
Sbjct: 234 PQLLLRSSLTGKGASS-SHNVTTR--VSFMAAPSSSFLSPDSLHILFNAGLYQSLKCRKG 404
Query: 53 DSGMASCSSSLYEILGIAAAASDQEIKAAYRRL 85
+ ++ Y +LG++ AS EIK+AYR+L
Sbjct: 405 SRLIVRANTDYYSVLGVSRNASKSEIKSAYRKL 503
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.125 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,435,679
Number of Sequences: 28460
Number of extensions: 29468
Number of successful extensions: 222
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of query: 158
length of database: 4,897,600
effective HSP length: 83
effective length of query: 75
effective length of database: 2,535,420
effective search space: 190156500
effective search space used: 190156500
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0197.6