TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0197.5
         (317 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC12794 homologue to UP|Q9SXF7 (Q9SXF7) Amino acid transporter-l...    27  4.5
TC8984 similar to UP|Q8LBA3 (Q8LBA3) Phosphoserine aminotransfer...    27  4.5
TC9535                                                                 27  5.9

>TC12794 homologue to UP|Q9SXF7 (Q9SXF7) Amino acid transporter-like protein
           1, partial (19%)
          Length = 679

 Score = 26.9 bits (58), Expect = 4.5
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +1

Query: 184 KEVTVLMVGWVHNWLVGSLRMGTRWVVQINNVW 216
           K+ T     W  NW++G L +G      I  +W
Sbjct: 154 KQPTKYSFNWYFNWILGWLGVGFSLAFSIGGIW 252


>TC8984 similar to UP|Q8LBA3 (Q8LBA3) Phosphoserine aminotransferase,
           partial (25%)
          Length = 563

 Score = 26.9 bits (58), Expect = 4.5
 Identities = 12/29 (41%), Positives = 16/29 (54%)
 Frame = -2

Query: 183 RKEVTVLMVGWVHNWLVGSLRMGTRWVVQ 211
           R E  V  VGW  NW+   + MG + VV+
Sbjct: 241 RSEDWVWWVGWGSNWVAHLMEMGLKEVVE 155


>TC9535 
          Length = 1083

 Score = 26.6 bits (57), Expect = 5.9
 Identities = 13/42 (30%), Positives = 21/42 (49%)
 Frame = +2

Query: 138 HEEKPLDLGRMSHLVCGESKGATEEAMSVTAEARHVVKNADV 179
           HEE      +  HLV  + KG+T E + V +E R  +  + +
Sbjct: 710 HEEDSQ*KLQCRHLVLAQEKGSTVETIPVASETRFPISRSRI 835


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,488,348
Number of Sequences: 28460
Number of extensions: 49948
Number of successful extensions: 267
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of query: 317
length of database: 4,897,600
effective HSP length: 90
effective length of query: 227
effective length of database: 2,336,200
effective search space: 530317400
effective search space used: 530317400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)