TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0195b.8
         (83 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC16709 weakly similar to PIR|T47573|T47573 peptide transport-li...    76  1e-15
TC18768                                                                60  7e-11
TC14389 weakly similar to UP|Q9FNL8 (Q9FNL8) Peptide transporter...    57  8e-10
TC19180 similar to PIR|T10255|T10255 nitrite transport protein, ...    52  2e-08
AV416871                                                               49  2e-07
TC14955 UP|O22305 (O22305) Peptide transporter, complete               47  6e-07
BU494138                                                               46  1e-06
CB828687                                                               36  0.001
CN824992                                                               33  0.007
AV411896                                                               31  0.046
AV429083                                                               25  3.3
AV765423                                                               25  3.3
TC14896 homologue to UP|RS18_ARATH (P34788) 40S ribosomal protei...    24  5.6

>TC16709 weakly similar to PIR|T47573|T47573 peptide transport-like protein
           - Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (41%)
          Length = 712

 Score = 75.9 bits (185), Expect = 1e-15
 Identities = 37/66 (56%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
 Frame = +1

Query: 18  DYANPWRLFTVTQVEELKILIRVLPIWATEIVFSAVYALLSTLLVEQGTMMNRSFG--SF 75
           D  +PWRL T TQVEELK ++R+LP+WAT I+F+ VY  +STL V QG  MN   G  +F
Sbjct: 277 DSVDPWRLCTETQVEELKSILRMLPVWATGIIFATVYGQMSTLFVLQGQTMNTHVGNSNF 456

Query: 76  NIPPAS 81
            IPPA+
Sbjct: 457 KIPPAA 474


>TC18768 
          Length = 738

 Score = 60.1 bits (144), Expect = 7e-11
 Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
 Frame = +2

Query: 13  ESRSGDYANPWRLFTVTQVEELKILIRVLPIWATEIVFSAVYALLSTLLVEQGTMMNRSF 72
           E+ S    + WRL +V QVE++KIL+ V+PI++  IVF+ + A L T  V+QG+ M+   
Sbjct: 284 EAGSNTKKSSWRLCSVGQVEQVKILLSVIPIFSCTIVFNTILAQLQTFSVQQGSAMDTHL 463

Query: 73  -GSFNIPPASCE 83
             SF+IPPAS +
Sbjct: 464 TKSFHIPPASLQ 499


>TC14389 weakly similar to UP|Q9FNL8 (Q9FNL8) Peptide transporter, partial
           (72%)
          Length = 1990

 Score = 56.6 bits (135), Expect = 8e-10
 Identities = 28/61 (45%), Positives = 41/61 (66%), Gaps = 1/61 (1%)
 Frame = +3

Query: 21  NPWRLFTVTQVEELKILIRVLPIWATEIVFSAVYALLSTLLVEQGTMMNRSFG-SFNIPP 79
           +PWRL TVTQVEE K + +++PI  T ++   +     TL ++QGT ++RS G +F IPP
Sbjct: 849 SPWRLCTVTQVEETKQMTKMVPILITTLIPCTMLIQAHTLFIKQGTTLDRSMGPNFEIPP 1028

Query: 80  A 80
           A
Sbjct: 1029A 1031


>TC19180 similar to PIR|T10255|T10255 nitrite transport protein,
          chloroplast - cucumber {Cucumis sativus;} , partial
          (12%)
          Length = 408

 Score = 52.0 bits (123), Expect = 2e-08
 Identities = 29/62 (46%), Positives = 37/62 (58%), Gaps = 1/62 (1%)
 Frame = +1

Query: 21 NPWRLFTVTQVEELKILIRVLPIWATEIVFSAVYALLSTLLVEQGTMMNRSF-GSFNIPP 79
          N WRL TV +VEELK +IR+ PIWA+ I+    YA   T  ++Q   M+R    SF IP 
Sbjct: 34 NKWRLNTVHRVEELKSIIRMGPIWASGILLITAYAQQGTFSLQQAKTMDRHITKSFQIPA 213

Query: 80 AS 81
           S
Sbjct: 214GS 219


>AV416871 
          Length = 354

 Score = 48.5 bits (114), Expect = 2e-07
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +3

Query: 11  DSESRSGDYANPWRLFTVTQVEELKILIRVLPIWATEIVFSAVYALLSTLLVEQG-TMMN 69
           D E    +  + W+L  VTQVE  KI++ + P++   I+ +   A + T  V+QG TM  
Sbjct: 105 DMELEKPESTSQWKLCRVTQVENAKIILSMGPVFLCTIIMTLCLAQIQTFSVQQGYTMDT 284

Query: 70  RSFGSFNIPPAS 81
           +    FN+PPAS
Sbjct: 285 KITKDFNMPPAS 320


>TC14955 UP|O22305 (O22305) Peptide transporter, complete
          Length = 2300

 Score = 47.0 bits (110), Expect = 6e-07
 Identities = 30/77 (38%), Positives = 46/77 (58%), Gaps = 1/77 (1%)
 Frame = +1

Query: 6   IDLVSDSESRSGDYANPWRLFTVTQVEELKILIRVLPIWATEIVFSAVYALLSTLLVEQG 65
           +D  +  ES + D +NP    TVTQVE  K+++ +  IW   ++ +  +AL ST+ V QG
Sbjct: 919 LDRAAIRESNT-DLSNP--PCTVTQVEGTKLVLGMFQIWLLMLIPTNCWALESTIFVRQG 1089

Query: 66  TMMNRSFG-SFNIPPAS 81
           T M+R+ G  F +P AS
Sbjct: 1090TTMDRTLGPKFRLPAAS 1140


>BU494138 
          Length = 518

 Score = 46.2 bits (108), Expect = 1e-06
 Identities = 26/62 (41%), Positives = 33/62 (52%), Gaps = 1/62 (1%)
 Frame = +2

Query: 21 NPWRLFTVTQVEELKILIRVLPIWATEIVFSAVYALLSTLLVEQGTMMNRSFGS-FNIPP 79
          N  R+ ++ QVEE+K L R+ PIWA  I+     A   T  V Q   M+R  GS F IP 
Sbjct: 2  NSARVVSIQQVEEIKCLARIFPIWAAGILGFTAMAQQGTFTVSQAMKMDRHIGSKFQIPA 181

Query: 80 AS 81
           S
Sbjct: 182GS 187


>CB828687 
          Length = 554

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = +1

Query: 21  NPWRLFTVTQVEELKILIRVLPIWATEIV 49
           +PWRL TVTQVEE K + +++PI  T ++
Sbjct: 454 SPWRLCTVTQVEETKQMTKMVPILITTLI 540


>CN824992 
          Length = 708

 Score = 33.5 bits (75), Expect = 0.007
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +2

Query: 8   LVSDSESRSGDYANPWRLFTVTQVEELKILIRV 40
           L++  ES+  +  + W L TVTQVEE+K ++R+
Sbjct: 608 LITSQESKQENECSLWHLSTVTQVEEVKCILRL 706


>AV411896 
          Length = 323

 Score = 30.8 bits (68), Expect = 0.046
 Identities = 15/29 (51%), Positives = 19/29 (64%)
 Frame = +1

Query: 7   DLVSDSESRSGDYANPWRLFTVTQVEELK 35
           D+ SD     G  ++PWRL T+ QVEELK
Sbjct: 247 DITSD-----GSASDPWRLCTIDQVEELK 318


>AV429083 
          Length = 316

 Score = 24.6 bits (52), Expect = 3.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 45  ATEIVFSAVYALLSTLLVEQGTMMN 69
           + E +FS V+ L  T+ ++QGT+ N
Sbjct: 227 SVEYIFSLVHVLS*TIPIQQGTISN 153


>AV765423 
          Length = 395

 Score = 24.6 bits (52), Expect = 3.3
 Identities = 9/22 (40%), Positives = 17/22 (76%)
 Frame = +1

Query: 23  WRLFTVTQVEELKILIRVLPIW 44
           W++F+ +Q+ ELK+ ++  PIW
Sbjct: 259 WQIFSASQLMELKVHMK--PIW 318


>TC14896 homologue to UP|RS18_ARATH (P34788) 40S ribosomal protein S18,
           complete
          Length = 906

 Score = 23.9 bits (50), Expect = 5.6
 Identities = 19/65 (29%), Positives = 30/65 (45%), Gaps = 1/65 (1%)
 Frame = -3

Query: 14  SRSGDYANPWRLFTVTQVEELKILIRVLPIWATEIVFSAVYALLSTLLVEQGTM-MNRSF 72
           S S    +P  LF  T     ++L  +LPI   E+  + ++   STL+     M  N SF
Sbjct: 253 SNSAALNSPALLFMSTSAFLQQMLANLLPIPLMEVRANMIFCFPSTLVFSTRRMCWNSSF 74

Query: 73  GSFNI 77
            + +I
Sbjct: 73  ATRDI 59


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,359,397
Number of Sequences: 28460
Number of extensions: 12902
Number of successful extensions: 65
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of query: 83
length of database: 4,897,600
effective HSP length: 59
effective length of query: 24
effective length of database: 3,218,460
effective search space: 77243040
effective search space used: 77243040
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)