TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0195a.7
         (69 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC17933 homologue to UP|CAF02296 (CAF02296) Rho GDP dissociation...   122  1e-29
TC18770 similar to UP|Q7Y0Q8 (Q7Y0Q8) Rac GDP-dissociation inhib...   100  7e-23
TC8108 homologue to UP|CAF02295 (CAF02295) Rho GDP dissociation ...    68  4e-13
CB828383                                                               24  4.8
TC12981                                                                24  4.8
TC12962 similar to AAQ89629 (AAQ89629) At3g50330, partial (27%)        23  8.2
BP050493                                                               23  8.2

>TC17933 homologue to UP|CAF02296 (CAF02296) Rho GDP dissociation inhibitor
           2, partial (34%)
          Length = 482

 Score =  122 bits (306), Expect = 1e-29
 Identities = 55/66 (83%), Positives = 61/66 (92%)
 Frame = +1

Query: 4   VTVDSSKEMIGTFSPQTDPYTHEMPDETTPSGIFARRAYSARSKFVDDDNKCYLEIDYTF 63
           + VDS+KEMIGTFSPQ +PYTHEMP+ETTPSGIFAR  YSAR+KFVDDDNK YLEI+YTF
Sbjct: 43  IKVDSTKEMIGTFSPQAEPYTHEMPEETTPSGIFARGTYSARTKFVDDDNKMYLEINYTF 222

Query: 64  DIRKDW 69
           DIRKDW
Sbjct: 223 DIRKDW 240


>TC18770 similar to UP|Q7Y0Q8 (Q7Y0Q8) Rac GDP-dissociation inhibitor 1,
           partial (66%)
          Length = 948

 Score =  100 bits (248), Expect = 7e-23
 Identities = 42/66 (63%), Positives = 56/66 (84%)
 Frame = +1

Query: 4   VTVDSSKEMIGTFSPQTDPYTHEMPDETTPSGIFARRAYSARSKFVDDDNKCYLEIDYTF 63
           V VD++K M+GT+SPQ +PYT+E+ +ETTPSG+FAR  YSAR+KFVDDD KCYL+  Y F
Sbjct: 643 VRVDNAKRMLGTYSPQQEPYTYELEEETTPSGLFARGTYSARTKFVDDDRKCYLDATYHF 822

Query: 64  DIRKDW 69
           +I+K+W
Sbjct: 823 EIQKNW 840


>TC8108 homologue to UP|CAF02295 (CAF02295) Rho GDP dissociation inhibitor
           1, partial (28%)
          Length = 599

 Score = 67.8 bits (164), Expect = 4e-13
 Identities = 28/52 (53%), Positives = 39/52 (74%)
 Frame = +2

Query: 5   TVDSSKEMIGTFSPQTDPYTHEMPDETTPSGIFARRAYSARSKFVDDDNKCY 56
           +VD SK M+GTF+PQ +PY + + ++TTPSG  AR  YSA+ KF DDD +C+
Sbjct: 191 SVDQSKGMLGTFAPQKEPYVYALKEDTTPSGALARGVYSAKLKFEDDDQRCH 346


>CB828383 
          Length = 372

 Score = 24.3 bits (51), Expect = 4.8
 Identities = 10/22 (45%), Positives = 13/22 (58%)
 Frame = -2

Query: 13  IGTFSPQTDPYTHEMPDETTPS 34
           +G F P   P+T  +P ET PS
Sbjct: 356 LGRFDP*FWPHTQSLPVETVPS 291


>TC12981 
          Length = 614

 Score = 24.3 bits (51), Expect = 4.8
 Identities = 11/21 (52%), Positives = 12/21 (56%)
 Frame = -2

Query: 20  TDPYTHEMPDETTPSGIFARR 40
           T+  TH  P  T PSGI  RR
Sbjct: 463 TNSNTHSAPSSTYPSGIRHRR 401


>TC12962 similar to AAQ89629 (AAQ89629) At3g50330, partial (27%)
          Length = 545

 Score = 23.5 bits (49), Expect = 8.2
 Identities = 14/38 (36%), Positives = 18/38 (46%), Gaps = 2/38 (5%)
 Frame = +2

Query: 8   SSKEMIGTFSPQT--DPYTHEMPDETTPSGIFARRAYS 43
           SS   I   +P T    +TH  P  TTPS  F  + Y+
Sbjct: 167 SSATSINNNNPPTPWSTFTHHFPSSTTPS--FPNKLYT 274


>BP050493 
          Length = 549

 Score = 23.5 bits (49), Expect = 8.2
 Identities = 7/16 (43%), Positives = 12/16 (74%)
 Frame = -3

Query: 54  KCYLEIDYTFDIRKDW 69
           KCY E+++  ++RK W
Sbjct: 166 KCY*EMNFKANVRKSW 119


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 971,487
Number of Sequences: 28460
Number of extensions: 8528
Number of successful extensions: 39
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of query: 69
length of database: 4,897,600
effective HSP length: 45
effective length of query: 24
effective length of database: 3,616,900
effective search space: 86805600
effective search space used: 86805600
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)