TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0193.6
         (491 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14363 homologue to UP|CAT4_SOYBN (O48561) Catalase 4  , partia...   645  0.0
TC8016 homologue to UP|CAT4_SOYBN (O48561) Catalase 4  , partial...   298  1e-81
AV423314                                                               32  0.31
TC19125 UP|GBA1_LOTJA (P49082) Guanine nucleotide-binding protei...    29  1.5
TC16085                                                                28  3.4
TC12755 similar to UP|Q9C587 (Q9C587) Replication factor C large...    27  5.8
TC13465 similar to UP|O23110 (O23110) AP2 domain containing prot...    27  7.6
BP047231                                                               27  7.6
AV428867                                                               27  7.6
AV409973                                                               27  7.6
BP084682                                                               27  9.9
BP084260                                                               27  9.9
TC10410 weakly similar to UP|Q8H5W8 (Q8H5W8) OJ1123_B01.10 prote...    27  9.9
CN825229                                                               27  9.9

>TC14363 homologue to UP|CAT4_SOYBN (O48561) Catalase 4  , partial (63%)
          Length = 1045

 Score =  645 bits (1664), Expect = 0.0
 Identities = 304/305 (99%), Positives = 305/305 (99%)
 Frame = +3

Query: 4   QHRPSSAFNSPFWTTNSGAPVWNNNNSMTVGVRGPILLEDYHLVEKLANFDRERIPERVV 63
           +HRPSSAFNSPFWTTNSGAPVWNNNNSMTVGVRGPILLEDYHLVEKLANFDRERIPERVV
Sbjct: 129 KHRPSSAFNSPFWTTNSGAPVWNNNNSMTVGVRGPILLEDYHLVEKLANFDRERIPERVV 308

Query: 64  HARGASAKGFFEVTHDVSHLTCADFLRAPGVQTPIILRFSTVIHERGSPETLRDPRGFAV 123
           HARGASAKGFFEVTHDVSHLTCADFLRAPGVQTPIILRFSTVIHERGSPETLRDPRGFAV
Sbjct: 309 HARGASAKGFFEVTHDVSHLTCADFLRAPGVQTPIILRFSTVIHERGSPETLRDPRGFAV 488

Query: 124 KFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQENWRILDFFSHFPESLH 183
           KFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQENWRILDFFSHFPESLH
Sbjct: 489 KFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQENWRILDFFSHFPESLH 668

Query: 184 MFTFLFDDVGVPQDYRHMDGFGVNTYTLINKAGKVVYVKFHWKPTCGVKCLLEEEAIKVG 243
           MFTFLFDDVGVPQDYRHMDGFGVNTYTLINKAGKVVYVKFHWKPTCGVKCLLEEEAIKVG
Sbjct: 669 MFTFLFDDVGVPQDYRHMDGFGVNTYTLINKAGKVVYVKFHWKPTCGVKCLLEEEAIKVG 848

Query: 244 GSNHSHATQDLYESIAAGNYPEWKLFIQTIDPDHEDRFDFDPLDVTKTWPEDIIPLQPVG 303
           GSNHSHATQDLYESIAAGNYPEWKLFIQTIDPDHEDRFDFDPLDVTKTWPEDIIPLQPVG
Sbjct: 849 GSNHSHATQDLYESIAAGNYPEWKLFIQTIDPDHEDRFDFDPLDVTKTWPEDIIPLQPVG 1028

Query: 304 RMVLN 308
           RMVLN
Sbjct: 1029RMVLN 1043


>TC8016 homologue to UP|CAT4_SOYBN (O48561) Catalase 4  , partial (28%)
          Length = 727

 Score =  298 bits (763), Expect = 1e-81
 Identities = 137/137 (100%), Positives = 137/137 (100%)
 Frame = +1

Query: 355 LGPNYLQLPANAPKCAHHNNHHEGFMNFMHRDEEVNYFPSRYDPVRHAERYPIPPAICTG 414
           LGPNYLQLPANAPKCAHHNNHHEGFMNFMHRDEEVNYFPSRYDPVRHAERYPIPPAICTG
Sbjct: 1   LGPNYLQLPANAPKCAHHNNHHEGFMNFMHRDEEVNYFPSRYDPVRHAERYPIPPAICTG 180

Query: 415 SRERCAIEKENNFKQPGERYRSFAPDRQDRFVRRWVDALSDPRVTHEIRSTWISYWSQAD 474
           SRERCAIEKENNFKQPGERYRSFAPDRQDRFVRRWVDALSDPRVTHEIRSTWISYWSQAD
Sbjct: 181 SRERCAIEKENNFKQPGERYRSFAPDRQDRFVRRWVDALSDPRVTHEIRSTWISYWSQAD 360

Query: 475 RSLGQKIASHLNLRPSI 491
           RSLGQKIASHLNLRPSI
Sbjct: 361 RSLGQKIASHLNLRPSI 411


>AV423314 
          Length = 498

 Score = 31.6 bits (70), Expect = 0.31
 Identities = 22/71 (30%), Positives = 31/71 (42%)
 Frame = +2

Query: 11  FNSPFWTTNSGAPVWNNNNSMTVGVRGPILLEDYHLVEKLANFDRERIPERVVHARGASA 70
           + S  WT  +G  +W   N  T G+RG       HL+++ A F   R     VH +   A
Sbjct: 230 WTSRMWTKYTGVLIWKTQNPWT-GLRGQFY---DHLLDQTAGFYGCRCAAEPVHVQLNLA 397

Query: 71  KGFFEVTHDVS 81
             F EV +  S
Sbjct: 398 TYFIEVVNTTS 430


>TC19125 UP|GBA1_LOTJA (P49082) Guanine nucleotide-binding protein alpha-1
           subunit (GP-alpha-1), complete
          Length = 1597

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 23/84 (27%), Positives = 33/84 (38%)
 Frame = +2

Query: 367 PKCAHHNNHHEGFMNFMHRDEEVNYFPSRYDPVRHAERYPIPPAICTGSRERCAIEKENN 426
           P C H+      FM  +HR  + NY P++ D V +A        + T             
Sbjct: 494 PDCTHY------FMENLHRLSDANYVPTK-DDVLYAR-------VRTTGVVEIQFSPVGE 631

Query: 427 FKQPGERYRSFAPDRQDRFVRRWV 450
            K+ GE YR F    Q    R+W+
Sbjct: 632 NKKSGEVYRLFDVGGQRNERRKWI 703


>TC16085 
          Length = 501

 Score = 28.1 bits (61), Expect = 3.4
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 65  ARGASAKGFFEVTHDVSHLTC 85
           ARG S K  F V  D+ HLTC
Sbjct: 234 ARGTSLKWHFRVLKDMQHLTC 172


>TC12755 similar to UP|Q9C587 (Q9C587) Replication factor C large
           subunit-like protein, partial (3%)
          Length = 477

 Score = 27.3 bits (59), Expect = 5.8
 Identities = 10/23 (43%), Positives = 12/23 (51%)
 Frame = -2

Query: 390 NYFPSRYDPVRHAERYPIPPAIC 412
           N  PS Y P RH+   P P  +C
Sbjct: 413 NQLPSSYQPPRHSHHLPHPHQLC 345


>TC13465 similar to UP|O23110 (O23110) AP2 domain containing protein RAP2.8
           (Fragment), partial (18%)
          Length = 609

 Score = 26.9 bits (58), Expect = 7.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 356 GPNYLQLPANAPKCAHHNNHH 376
           G N L+LP +     +HNNHH
Sbjct: 238 GVNILKLPGSDANANNHNNHH 300


>BP047231 
          Length = 476

 Score = 26.9 bits (58), Expect = 7.6
 Identities = 17/53 (32%), Positives = 26/53 (48%), Gaps = 1/53 (1%)
 Frame = -1

Query: 284 DPLDVTKTWPEDIIPLQPVGRMVLNKNIDNFFAENEQLAFC-PAIVVPGISYS 335
           DP++V K + + +  LQP G     ++I      +  LA C P    PG +YS
Sbjct: 230 DPINVMKVFEKSVFCLQPPGDSYTRRSI-----FDSMLAGCVPVFFHPGTAYS 87


>AV428867 
          Length = 628

 Score = 26.9 bits (58), Expect = 7.6
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +1

Query: 417 ERCAIEKENNFKQPGERYRSFAPDRQDRFVRRWVDALSDPRVTHEIRSTWIS 468
           +R +  + + F +P    +S +  + DRF     D +S+PR + + RS  IS
Sbjct: 217 DRFSEPRGDRFSEPSGSTQSRSAAKGDRFSEPRGDRISEPRDSRQSRSATIS 372


>AV409973 
          Length = 415

 Score = 26.9 bits (58), Expect = 7.6
 Identities = 11/34 (32%), Positives = 15/34 (43%)
 Frame = +2

Query: 455 DPRVTHEIRSTWISYWSQADRSLGQKIASHLNLR 488
           D    H  +S W+S+W+           SHL LR
Sbjct: 191 DAPAMHGSKSAWMSHWANTSCKSATPARSHLTLR 292


>BP084682 
          Length = 236

 Score = 26.6 bits (57), Expect = 9.9
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 358 NYLQLPANAPKCAHHNNH 375
           ++L+LP+ A  C HH++H
Sbjct: 188 HHLELPSAASSCGHHHSH 135


>BP084260 
          Length = 333

 Score = 26.6 bits (57), Expect = 9.9
 Identities = 13/44 (29%), Positives = 22/44 (49%)
 Frame = +2

Query: 197 DYRHMDGFGVNTYTLINKAGKVVYVKFHWKPTCGVKCLLEEEAI 240
           +YRH      ++Y L +    +VY+   W P C + C  +E+ I
Sbjct: 152 EYRH------SSYRLSSSPLLLVYIYESWIPHCRIHCRKQEKCI 265


>TC10410 weakly similar to UP|Q8H5W8 (Q8H5W8) OJ1123_B01.10 protein, partial
           (12%)
          Length = 431

 Score = 26.6 bits (57), Expect = 9.9
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 5/112 (4%)
 Frame = +1

Query: 357 PNYLQLPANAPKCAHHNNHHEGFMNFMHRDEEVNYFPSRYDPV--RHAERYPIPPAICTG 414
           P  L  P N     HH NHH   +   HR       PS++ P+  +   +    P I T 
Sbjct: 34  PPPLGAPLNPHNLNHHYNHHLLSLKLHHRQP----LPSQHHPILPKTLTQPQFQPQIQTQ 201

Query: 415 SRERCAIEKENNFK--QPGERYRSFA-PDRQDRFVRRWVDALSDPRVTHEIR 463
           ++ +  I  ++  +   P +   + A P      +RR   +    R +H  R
Sbjct: 202 TQSKSKILTQSTTQTLDPLQLLHNLALPPHSTELLRRSSSSRRISRTSHRFR 357


>CN825229 
          Length = 641

 Score = 26.6 bits (57), Expect = 9.9
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
 Frame = +3

Query: 296 IIPLQPVG-RMVLNKNIDNFFAENEQLAFCPA-IVVPGISYSDDKMLQT----RIFSYAD 349
           +  L P G R+V++   D  + E E L    A +++  +SY++DK+ +     R+F Y  
Sbjct: 186 VYKLLPQGTRLVVSVRGDEPYEELEILKGVDATMLLHDLSYAEDKVSRVHAARRLFEY-- 359

Query: 350 SQRHRLGPNYLQLPANAPKCAHHNNHHEGFMNFMHRDEEV 389
                L  N L  P           HH  F N +HRD+ V
Sbjct: 360 -----LSDNSLNFPVI---------HHIQFPNGIHRDDLV 437


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.139    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,842,934
Number of Sequences: 28460
Number of extensions: 154034
Number of successful extensions: 718
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of query: 491
length of database: 4,897,600
effective HSP length: 94
effective length of query: 397
effective length of database: 2,222,360
effective search space: 882276920
effective search space used: 882276920
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)