TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0192.7
         (263 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP065719                                                               52  1e-07
BP033666                                                               37  2e-07
BP064236                                                               30  0.42
AV769356                                                               28  1.2
TC15811 similar to UP|RL13_ARATH (P41127) 60S ribosomal protein ...    27  2.7

>BP065719 
          Length = 567

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 32/120 (26%), Positives = 58/120 (47%), Gaps = 2/120 (1%)
 Frame = +3

Query: 12  FSEDVESVAILDNMKALVLDSYSGDSDPK--DHLLYFNTKMVIIAASDAVKCRMFPSTFK 69
           F E+V    +    K      +SGDS     +H+  +  +   +A ++ +K + FPS+  
Sbjct: 135 FIEEVLESELPRGWKVPKFTKFSGDSGESTVEHIARYQIEAGDLAINENLKMKYFPSSLT 314

Query: 70  STAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYSIRQQEGESLKEYVARY 129
             A  WFTTL   S+  +      F  QF   + + V+  DL S++++  ES+ +Y+ R+
Sbjct: 315 KNAFTWFTTLAPRSVHTWAQLERIFHEQFFRGECK-VSXKDLASVKRKPAESIDDYLNRF 491


>BP033666 
          Length = 342

 Score = 36.6 bits (83), Expect(2) = 2e-07
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = -1

Query: 90  FSSKFLVQFSANKNQPVTINDLYSIRQQEGESLKEYVARY 129
           F + FL  FSAN+ Q  T  DL++I QQ GE ++ Y + Y
Sbjct: 273 FFN*FLTXFSANQTQKATSADLFNICQQVGERVRPYFSLY 154



 Score = 33.9 bits (76), Expect(2) = 2e-07
 Identities = 15/26 (57%), Positives = 17/26 (64%)
 Frame = -2

Query: 67  TFKSTAMAWFTTLPRGSISNFRDFSS 92
           +FK  AM WF   P  SISNF DFS+
Sbjct: 341 SFKGVAMTWFIKQPPYSISNFTDFST 264


>BP064236 
          Length = 578

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 26/91 (28%), Positives = 41/91 (44%), Gaps = 8/91 (8%)
 Frame = -3

Query: 13  SEDVESVAILDNMKALVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTA 72
           S+ + S AI+D +KAL   S      P D  ++  TKMV IA  +  + R+  S+     
Sbjct: 513 SQKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKMVEIAHYNMNRIRLVWSSIWHVL 334

Query: 73  MAWFTTLPRG--------SISNFRDFSSKFL 95
             +F T+           ++ + R  S KFL
Sbjct: 333 SDFFVTIGCSANLSIAIFAMDSLRQLSMKFL 241


>AV769356 
          Length = 574

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 19/59 (32%), Positives = 26/59 (43%), Gaps = 1/59 (1%)
 Frame = -2

Query: 39  PKDHLLYFNTKMV-IIAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLV 96
           PK  +  F T ++  +    A +    P TFK   + W T L   S SN RD   K L+
Sbjct: 546 PKGDVYSFGTVLLEFVTGERATQVAKAPETFKGNLVEWITQLT--SHSNLRDAIDKSLL 376


>TC15811 similar to UP|RL13_ARATH (P41127) 60S ribosomal protein L13 (BBC1
           protein homolog), complete
          Length = 981

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 17/46 (36%), Positives = 27/46 (57%), Gaps = 3/46 (6%)
 Frame = +2

Query: 163 RKPARSMEEMRA---RASTYILDEEDDAFKRKRAKLEKGDTSPEQR 205
           R+  RS+E ++A   R  TY    +   F R+  K++ GD+SPE+R
Sbjct: 332 RRRNRSLESLQANVQRLKTY--KAKLVVFPRRARKVKAGDSSPEER 463


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,968,661
Number of Sequences: 28460
Number of extensions: 30027
Number of successful extensions: 153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of query: 263
length of database: 4,897,600
effective HSP length: 88
effective length of query: 175
effective length of database: 2,393,120
effective search space: 418796000
effective search space used: 418796000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)