BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0192.13
(1558 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP041998 110 3e-25
BP054819 106 3e-23
BP063694 64 1e-10
AV781229 57 6e-09
AV766088 50 3e-06
BP033602 49 5e-06
BP066094 42 7e-04
TC11361 36 0.041
AV764934 36 0.054
BP081717 35 0.12
TC17890 weakly similar to UP|Q9ZSR3 (Q9ZSR3) Cytochrome (Fragmen... 32 0.77
TC13132 similar to UP|Q9FJA1 (Q9FJA1) Similarity to retroelement... 31 1.3
AV406379 30 2.3
BP078157 30 2.9
AV426216 30 3.8
BP063902 30 3.8
TC8256 homologue to UP|AAR12195 (AAR12195) Molecular chaperone H... 29 6.6
TC15451 29 6.6
AV769820 29 6.6
BP030995 28 8.6
>BP041998
Length = 485
Score = 110 bits (274), Expect(2) = 3e-25
Identities = 55/70 (78%), Positives = 58/70 (82%), Gaps = 1/70 (1%)
Frame = -3
Query: 4 FLKSIDSKTWKSIVKRWKHPVKSDKEGTSTTEL-KPEEEWTKEEDEEALGNSKALNAIFN 62
FLKSID+KTWK+IV WKHP KS EGTSTT + KPEEEWT EDE ALGNSKALNAIF
Sbjct: 240 FLKSIDNKTWKAIVNGWKHPTKSQVEGTSTTVVEKPEEEWTSVEDEAALGNSKALNAIFY 61
Query: 63 GVDKNMFRLI 72
GVD NMFRLI
Sbjct: 60 GVDXNMFRLI 31
Score = 23.9 bits (50), Expect(2) = 3e-25
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = -2
Query: 73 NTCTVAKDAW 82
++CTVAKDAW
Sbjct: 31 HSCTVAKDAW 2
>BP054819
Length = 537
Score = 106 bits (264), Expect = 3e-23
Identities = 52/67 (77%), Positives = 57/67 (84%), Gaps = 1/67 (1%)
Frame = -3
Query: 1 MIAFLKSIDSKTWKSIVKRWKHPVKSDKEGTSTTEL-KPEEEWTKEEDEEALGNSKALNA 59
M AFLKSID+KTWK+IVK WKHP K + EGTSTT + KPEEEWT EDE ALGNSKALNA
Sbjct: 235 MTAFLKSIDNKTWKAIVKGWKHPTKVEVEGTSTTVVEKPEEEWTSVEDEAALGNSKALNA 56
Query: 60 IFNGVDK 66
IFNGVD+
Sbjct: 55 IFNGVDR 35
>BP063694
Length = 511
Score = 64.3 bits (155), Expect = 1e-10
Identities = 45/141 (31%), Positives = 67/141 (46%), Gaps = 6/141 (4%)
Frame = -2
Query: 654 YMWSPLSKGLITKCLVSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVC 713
Y+ + S+ L+T +LWH +LGH+N +K++ K + + + + C
Sbjct: 429 YVLNQDSQALLTTSSPLPRASFELWHSRLGHVNFDIIKQL-HKHGCLDVSSI-LPKPICC 256
Query: 714 GECQIGKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWV 773
CQ+ K + + A S L+L+H DL GP S G Y + VDDFSRFTW
Sbjct: 255 TSCQMAKSKRLVFHDNNKRA-SAVLDLIHCDLRGPSPVASIDGFSYFVIFVDDFSRFTWF 79
Query: 774 SFIAEKSD------TFEVFRE 788
+ KSD F+VF E
Sbjct: 78 YPLKRKSDFSDVLLRFKVFME 16
>AV781229
Length = 208
Score = 56.6 bits (135), Expect(2) = 6e-09
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = +3
Query: 270 KAK*VQCHECEGYGHIRSECATFLKKQGKGMV 301
K+K V CHE EGYGHIRSECAT+LKKQ KGMV
Sbjct: 108 KSKGV*CHEWEGYGHIRSECATYLKKQKKGMV 203
Score = 21.9 bits (45), Expect(2) = 6e-09
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 236 RFDRKYRPNVTNKQSDIIKNSGNALKDKEEDKS 268
+ D + R + +SD K+ K KEEDKS
Sbjct: 4 KIDSRTRSKCQDIKSDNFKSYNFQRKVKEEDKS 102
>AV766088
Length = 501
Score = 50.1 bits (118), Expect = 3e-06
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Frame = -3
Query: 677 LWHKKLGHLNPKSMK-----KIITKEAIRGLPKLKIEEGKVCGECQIGKQTQAPYKKLTH 731
LWH +LGH + +++ K I+ E + P VC C GK + P+ +
Sbjct: 307 LWHSRLGHPSSSALRYLRSNKFISYELLNYSP--------VCESCVFGKHVRLPFVSSNN 152
Query: 732 IATSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVSFIAEKSDTF 783
+ T ++LH DL S G + YV +DDF+ F W ++ KS F
Sbjct: 151 V-TVMPFDILHSDLWTSPVLSSAGHRFYVLF-LDDFTDFLWTFPLSNKSQVF 2
>BP033602
Length = 533
Score = 49.3 bits (116), Expect = 5e-06
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 6/149 (4%)
Frame = +3
Query: 624 LNVSFIKVGCRVTDENEEVVMIGIRSV-DNCYMW-----SPLSKGLITKCLVSKEEETKL 677
+N+SFI+ C + ++ MIG + D Y + + ++GL S ++ L
Sbjct: 105 INLSFIQS*CCYSGT*QK--MIGSAKMKDGLYYFEDTFRNKAAQGLCGMSCTSVRDQIML 278
Query: 678 WHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGECQIGKQTQAPYKKLTHIATSKS 737
WH +LGH N + ++ + + + + +E C C + K +APY + A S+
Sbjct: 279 WHNRLGHPNFQYLRHLF-PDLFKNVNCSSLE----CESCVLAKNQRAPYYSQPYHA-SRP 440
Query: 738 LELLHMDLMGPMQKESFGGKRYVFVCVDD 766
L+H D+ GP + + GKR+ +DD
Sbjct: 441 FYLIHSDVWGPSKITTQFGKRWFVTFIDD 527
>BP066094
Length = 532
Score = 42.0 bits (97), Expect = 7e-04
Identities = 42/128 (32%), Positives = 58/128 (44%)
Frame = +3
Query: 1157 IKWMLRVHS*MAI*MRRFMLNNQKALWIQLFQIMFTN*ERLCMD*SKHLGHGMKD*LIS* 1216
I+ MLRV *M R+ M N + ++ +F+N* L M *SK HGM+D S
Sbjct: 147 IR*MLRVPF*MVTSQRKSMFINPQVXKMRRTLTIFSN*RNLSMV*SKLPEHGMRDSAHSF 326
Query: 1217 QIKDTGKEG*TRLYL*EMIMET***LRYMWMI*YLEECQTIWCNSLFNK*SQNLK*VWWG 1276
* +L ++ * ++M MI YL+ ++ S NLK V W
Sbjct: 327 WKMSX*GVK*IQLSFAKLTKMIY*LCKFMLMILYLDLLIHLYAKSFLR*CRLNLKCV*WE 506
Query: 1277 N*TTFWDY 1284
N TFW Y
Sbjct: 507 NSNTFWVY 530
>TC11361
Length = 549
Score = 36.2 bits (82), Expect = 0.041
Identities = 16/43 (37%), Positives = 22/43 (50%)
Frame = +3
Query: 478 SQKEINSRWRCHHCGKHGHIRPYCYRLYRTPQHWKPTQKNVSM 520
S+ R C HCG GH + CYRL P H+K ++ S+
Sbjct: 12 SKSHKKDRPTCTHCGILGHTKDKCYRLIGFPPHYKKSKSVASV 140
>AV764934
Length = 406
Score = 35.8 bits (81), Expect = 0.054
Identities = 22/71 (30%), Positives = 37/71 (51%)
Frame = -2
Query: 678 WHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGECQIGKQTQAPYKKLTHIATSKS 737
WH +LGH + ++K++++ + PK +E C C +GK + P + T T
Sbjct: 213 WHSRLGHPHLDNLKRVLSSCNVSYSPKDTVEFRTAC--C-LGKAHRLPSQMST--TTYLP 49
Query: 738 LELLHMDLMGP 748
EL++ DL GP
Sbjct: 48 FELIYSDLWGP 16
>BP081717
Length = 291
Score = 34.7 bits (78), Expect = 0.12
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -1
Query: 677 LWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGECQIGKQTQAPY 726
+WH +LGH + K ++ I + P +K+ +C C + KQT+ P+
Sbjct: 168 MWHFRLGHPSSKVLQHI-----SKVFPYVKLHSNIICDFCHMAKQTKLPF 34
>TC17890 weakly similar to UP|Q9ZSR3 (Q9ZSR3) Cytochrome (Fragment), partial
(59%)
Length = 434
Score = 32.0 bits (71), Expect = 0.77
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = -1
Query: 653 CYMWSPLSKGLITKCLVSKEEETKLWHKKLGHLNPKSMKKIITKE-AIRGLPKLKIEEGK 711
C MW S + CL +KE+ET+ HK++ N K + +II A+ P + ++GK
Sbjct: 269 CLMWCWYSL-V*QYCLTNKEDETEEHHKRVNIENAKWIVRIIFNSLAVMQQPNKQEDDGK 93
Query: 712 ----VCGEC 716
VC C
Sbjct: 92 NAKQVCQNC 66
>TC13132 similar to UP|Q9FJA1 (Q9FJA1) Similarity to retroelement pol
polyprotein, partial (3%)
Length = 591
Score = 31.2 bits (69), Expect = 1.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 488 CHHCGKHGHIRPYCYRLYRTPQHWKPTQK 516
C HCG GH C++L+ P KP K
Sbjct: 40 CSHCGIPGHTAAKCFKLHGYPPGMKPKYK 126
>AV406379
Length = 226
Score = 30.4 bits (67), Expect = 2.3
Identities = 22/68 (32%), Positives = 33/68 (48%)
Frame = -3
Query: 663 LITKCLVSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGECQIGKQT 722
L T C + E L H +LGH + + +K+++ K L LK E C CQ+GK
Sbjct: 203 LSTLCAIF--ESPDLLHCRLGHPSLERLKQMVPK-----LSHLKTLE---CESCQLGKHV 54
Query: 723 QAPYKKLT 730
+A + T
Sbjct: 53 RASFPSST 30
>BP078157
Length = 395
Score = 30.0 bits (66), Expect = 2.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 676 KLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVC 713
+LWH +LGHL+ K +K + LP VC
Sbjct: 151 RLWHSRLGHLSDKVLKVVSNLVPFTVLPDFHSHNCNVC 38
>AV426216
Length = 413
Score = 29.6 bits (65), Expect = 3.8
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +1
Query: 959 WLLMTVESIWKKMMQMQMMV*LTQLM 984
WL +T S+ KKMM+M+M++ +T LM
Sbjct: 136 WLFLTGISLKKKMMKMRMLMKITPLM 213
>BP063902
Length = 494
Score = 29.6 bits (65), Expect = 3.8
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = -3
Query: 675 TKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGECQIGKQTQAPY 726
+ +WH +LGH ++ + + I P VC C +GK + P+
Sbjct: 189 SSVWHHRLGHPASSALNHLRNNKLIFCEPS---RSSSVCDSCVLGKHVRLPF 43
>TC8256 homologue to UP|AAR12195 (AAR12195) Molecular chaperone Hsp90-1,
partial (47%)
Length = 1251
Score = 28.9 bits (63), Expect = 6.6
Identities = 18/41 (43%), Positives = 21/41 (50%)
Frame = +2
Query: 810 KEFENSKFSEYCIKEGIKHEFSAPITTQQNGVVEKKTGLCK 850
KEFE K KEG+K E S +Q + EK GLCK
Sbjct: 407 KEFEGKKLVS-ATKEGLKLEESEDEKKKQEELKEKFDGLCK 526
>TC15451
Length = 662
Score = 28.9 bits (63), Expect = 6.6
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 950 LRQ*RNLLMWLLMTVESIWKKMMQMQMMV*LTQLMIDQLLLTTGLTLKLM 999
LR +++L W L++ S WKK + M++ L L ++ G T K +
Sbjct: 107 LRVDQDMLTWKLISKLSPWKKQLMMKVQRLLVSLNSQMAVMLQGTTTKTL 256
>AV769820
Length = 316
Score = 28.9 bits (63), Expect = 6.6
Identities = 13/31 (41%), Positives = 16/31 (50%)
Frame = -2
Query: 473 YSYPLSQKEINSRWRCHHCGKHGHIRPYCYR 503
Y Y L Q C+ CGK GH+ YC+R
Sbjct: 300 YRYKLDQN--TKGIACNVCGKKGHLSIYCWR 214
>BP030995
Length = 458
Score = 28.5 bits (62), Expect = 8.6
Identities = 30/126 (23%), Positives = 51/126 (39%), Gaps = 31/126 (24%)
Frame = -3
Query: 600 LTDVLLVEGLTANLISISQLCDLDLNV--SFIKVGCRVTDENEEVVMI------GIRSVD 651
L ++L V G+ NL S+S C + NV F C V + E ++ G+ + D
Sbjct: 420 LNNLLHVPGVCKNLSSVSXFCKQN-NVFFEFHSDSCLVKSQETEETLLQGTLRNGLCAFD 244
Query: 652 NC------YMWSPLSKGLI-----------------TKCLVSKEEETKLWHKKLGHLNPK 688
N + S LS + KC + +++LWH +LGH + K
Sbjct: 243 NLLHKVNLHSASTLSNSALLSSSSPASALSVSVFSSNKC-AQADIDSRLWHSRLGHASQK 67
Query: 689 SMKKII 694
+ ++
Sbjct: 66 IVSHVL 49
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.339 0.147 0.472
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,194,354
Number of Sequences: 28460
Number of extensions: 332511
Number of successful extensions: 2567
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 2486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2550
length of query: 1558
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1456
effective length of database: 1,994,680
effective search space: 2904254080
effective search space used: 2904254080
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0192.13