BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0192.11
(571 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC13802 similar to UP|Q9M1T1 (Q9M1T1) Sugar-phosphate isomerase-... 32 0.21
TC15357 similar to UP|Q9ZV06 (Q9ZV06) At2g39020 protein, partial... 31 0.62
BF177499 30 1.1
TC15083 similar to UP|GAR1_YEAST (P28007) snoRNP protein GAR1, p... 30 1.1
TC10538 weakly similar to UP|Q8RW90 (Q8RW90) At1g12050/F12F1_8, ... 30 1.4
AV411945 30 1.4
TC16587 weakly similar to UP|Q9JGS5 (Q9JGS5) PORF1, partial (3%) 29 1.8
AV767530 29 2.4
TC17283 similar to UP|O65760 (O65760) Extensin (Fragment), parti... 29 2.4
AV780231 28 3.1
TC15380 similar to UP|Q8H5P5 (Q8H5P5) OJ1003_C06.27 protein, par... 28 3.1
TC12640 similar to UP|Q7X9B4 (Q7X9B4) Allene oxide synthase prec... 28 3.1
TC9502 similar to UP|Q8LG88 (Q8LG88) Sodium-dicarboxylate cotran... 28 3.1
TC10090 weakly similar to UP|Q9ZWP6 (Q9ZWP6) Lectin, partial (43%) 28 3.1
TC19805 28 4.0
CN824962 28 4.0
TC9384 similar to UP|Q7XAB8 (Q7XAB8) Light-regulated chloroplast... 28 4.0
TC19356 similar to UP|O64862 (O64862) At2g44270 protein, partial... 28 4.0
BI418811 28 4.0
BP063245 28 5.2
>TC13802 similar to UP|Q9M1T1 (Q9M1T1) Sugar-phosphate isomerase-like
protein, partial (41%)
Length = 522
Score = 32.3 bits (72), Expect = 0.21
Identities = 30/104 (28%), Positives = 44/104 (41%), Gaps = 1/104 (0%)
Frame = +2
Query: 45 EWSLHQSFAFIFINAPPALPNVIIRSCHHESRFPTNSTRTPRAPCKTSPYAYKNPAPSSL 104
+W L+ F + P L + + + S P +T T +P T+P +PAPSS
Sbjct: 11 KWVLYLHFQSTILPNKP-LHSTLTKPPSQISSNPNKTTSTTSSPTSTTPKPSPSPAPSS- 184
Query: 105 LTFQTPPYSPDFFEQTSGVFLFRHRCQP-ATYPFFNPFLTPSSA 147
T + P SP S P A+ P + LTPS+A
Sbjct: 185 -TLRAPSSSPASASPASSPTKSPKPSSPSASAPPSSTPLTPSTA 313
>TC15357 similar to UP|Q9ZV06 (Q9ZV06) At2g39020 protein, partial (69%)
Length = 1578
Score = 30.8 bits (68), Expect = 0.62
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +1
Query: 60 PPALPNVIIRSCHHESRFPTNSTRTPRAPCKTSPYAYKNPAPSSLLTFQTPP 111
PP+ P +R+ + + P++S+++PR P +P P+S T T P
Sbjct: 556 PPSPPRSSLRTTNPSTPSPSSSSKSPRTP---------SPTPTSTTTLSTSP 684
>BF177499
Length = 316
Score = 30.0 bits (66), Expect = 1.1
Identities = 23/82 (28%), Positives = 32/82 (38%), Gaps = 4/82 (4%)
Frame = -1
Query: 316 CSKLAAARRLAKFPPN----FNTENPKKKRHQRDNEVCENSNPVRQGTGEKESRTALREK 371
C +L A R K PP FN P+ R +R+ + + K R REK
Sbjct: 253 CFRLCHASRKKKPPPKRPQGFNIHQPEAPRLRRET----------RKSNRKNQRERKREK 104
Query: 372 EGHFDLAEKEARPNLGEKEKEV 393
E L +E KEK++
Sbjct: 103 ENQIGLEREEEERKKERKEKKL 38
>TC15083 similar to UP|GAR1_YEAST (P28007) snoRNP protein GAR1, partial (7%)
Length = 1367
Score = 30.0 bits (66), Expect = 1.1
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 25/81 (30%)
Frame = +2
Query: 59 APPALPNVIIR----------SCHHESRFPT----NSTRTPR-----------APCKTSP 93
+PP P ++R SC E+ FP+ + T TP AP +SP
Sbjct: 92 SPPLSPPKLLRAHPTSQ*SQASCG*ENHFPSLNQSSETSTPNMAQLSPSASAPAPPSSSP 271
Query: 94 YAYKNPAPSSLLTFQTPPYSP 114
A PS F+TPPYSP
Sbjct: 272 TAPSPTVPS----FKTPPYSP 322
Score = 26.9 bits (58), Expect = 9.0
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Frame = -2
Query: 58 NAPPALPNVIIRSCHHESRFPTNSTRTPRAPCKTSPYAYKNPAPSSLLTF---QTPPYSP 114
N PP+ P ++ S HH +S R P +P P PS+L + ++P
Sbjct: 1084 NLPPSPPCLLFPSSHH*FHLQYSSARVGIYPDSPAP----TPTPSTLCRYRR*ESPSTES 917
Query: 115 DFFEQTSGVFL--------FRHR 129
F ++ V L +RHR
Sbjct: 916 PFHSHSACVSLPATPIREAYRHR 848
>TC10538 weakly similar to UP|Q8RW90 (Q8RW90) At1g12050/F12F1_8, partial
(49%)
Length = 720
Score = 29.6 bits (65), Expect = 1.4
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 71 CHHESRFPTNSTRTPRAPCKTSPYAYKNPAPSSLLTFQTP 110
C+H S+F TRT +P +TSP A + P LL +P
Sbjct: 110 CNHSSKF----TRTLTSPYRTSPTACSSLNPLHLLALASP 217
>AV411945
Length = 405
Score = 29.6 bits (65), Expect = 1.4
Identities = 27/102 (26%), Positives = 49/102 (47%), Gaps = 13/102 (12%)
Frame = +3
Query: 481 RLDKVLTEAARD-KITIDKKLVSIANELVEARF------ELVCRSERIT------DLEEE 527
+L L +A+ D K +D++ E+ AR E + ER++ DLE+
Sbjct: 48 KLANFLKQASEDAKKLVDEERAFARAEIDNARAAVQRVEEALKEHERMSQASGKQDLEQL 227
Query: 528 IKETKQEAQLALAAKDDALALKDQELTSLRAELEEKKRDLLK 569
KE ++ ++ + + + + EL +LRA+L EK R L+
Sbjct: 228 KKEVQEARRIKMLHQPSKVMDMEHELQALRAQLAEKTRHYLR 353
Score = 27.7 bits (60), Expect = 5.2
Identities = 15/47 (31%), Positives = 25/47 (52%)
Frame = +3
Query: 518 SERITDLEEEIKETKQEAQLALAAKDDALALKDQELTSLRAELEEKK 564
++R +L +E E K+ A A +DA L D+E RAE++ +
Sbjct: 3 TQREGELIQEKSEVKKLANFLKQASEDAKKLVDEERAFARAEIDNAR 143
>TC16587 weakly similar to UP|Q9JGS5 (Q9JGS5) PORF1, partial (3%)
Length = 706
Score = 29.3 bits (64), Expect = 1.8
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 12/78 (15%)
Frame = +1
Query: 49 HQSFAFIFINAPPALPNVIIRSCHH--ESRF----------PTNSTRTPRAPCKTSPYAY 96
+Q+ FIF L N H E RF P +S TPR TSP++
Sbjct: 163 NQT*GFIFFTK*KLLSNSATNRRSHCSEPRFHSASSACRSNPASSPATPRNSHSTSPHSS 342
Query: 97 KNPAPSSLLTFQTPPYSP 114
PS LT T P +P
Sbjct: 343 NLALPSEPLTALTTPKTP 396
>AV767530
Length = 476
Score = 28.9 bits (63), Expect = 2.4
Identities = 22/93 (23%), Positives = 35/93 (36%)
Frame = +1
Query: 1 MAFQPKVANRSPSVHKSTSGEGRATTSNGRSLFKSITRHFRTEAEWSLHQSFAFIFINAP 60
M+ QP + + +S S AT + + TR R++ W+ H
Sbjct: 109 MSQQPTQSPAAGPCSQSQSSASAATRPPPWTAPR*PTRRARSQP*WTRHPRRGADGTTGR 288
Query: 61 PALPNVIIRSCHHESRFPTNSTRTPRAPCKTSP 93
+P + R C + P R P +PC SP
Sbjct: 289 TDVPPHLTRGCAASAHRPPRQLRRPWSPCAWSP 387
>TC17283 similar to UP|O65760 (O65760) Extensin (Fragment), partial (16%)
Length = 513
Score = 28.9 bits (63), Expect = 2.4
Identities = 21/82 (25%), Positives = 30/82 (35%), Gaps = 5/82 (6%)
Frame = +1
Query: 60 PPALPNVIIRSCHHESRFPTNSTR-----TPRAPCKTSPYAYKNPAPSSLLTFQTPPYSP 114
PPA P+ + S +ST P P +T Y + P S +PPY P
Sbjct: 148 PPATPSTLTTHPPPTSSSAFSSTLPIPRWNPPPPSRTPTSTYTSTPPFSAAPNTSPPYCP 327
Query: 115 DFFEQTSGVFLFRHRCQPATYP 136
+S + R + P P
Sbjct: 328 TAGSASSILIRLRRKTPPPPVP 393
>AV780231
Length = 530
Score = 28.5 bits (62), Expect = 3.1
Identities = 12/17 (70%), Positives = 15/17 (87%)
Frame = -3
Query: 248 AKTSFSQKYFMVAVHQA 264
AK+SF++KYF VAVH A
Sbjct: 528 AKSSFARKYFRVAVHPA 478
>TC15380 similar to UP|Q8H5P5 (Q8H5P5) OJ1003_C06.27 protein, partial (28%)
Length = 1306
Score = 28.5 bits (62), Expect = 3.1
Identities = 17/56 (30%), Positives = 23/56 (40%)
Frame = +2
Query: 59 APPALPNVIIRSCHHESRFPTNSTRTPRAPCKTSPYAYKNPAPSSLLTFQTPPYSP 114
A P P+ S +RFP + +P TSP+ PA S + PP P
Sbjct: 158 AAPTAPSTAASSTSSTARFPQTPNPSTASPPPTSPWT--PPATSGSASLPPPPPPP 319
>TC12640 similar to UP|Q7X9B4 (Q7X9B4) Allene oxide synthase precursor ,
partial (16%)
Length = 738
Score = 28.5 bits (62), Expect = 3.1
Identities = 18/47 (38%), Positives = 24/47 (50%), Gaps = 1/47 (2%)
Frame = +3
Query: 70 SCHHESRFPTNSTRTPRAPCKTSPY-AYKNPAPSSLLTFQTPPYSPD 115
SC H+ +FP +STR P P SP A + PSS+ SP+
Sbjct: 402 SCFHQLQFP-SSTRKPTKPFSVSPIRASVSEKPSSISVPSVSVSSPE 539
>TC9502 similar to UP|Q8LG88 (Q8LG88) Sodium-dicarboxylate
cotransporter-like, partial (42%)
Length = 1253
Score = 28.5 bits (62), Expect = 3.1
Identities = 17/42 (40%), Positives = 21/42 (49%), Gaps = 8/42 (19%)
Frame = -3
Query: 84 TPRAPCKTSPYAYKNPAPSS--------LLTFQTPPYSPDFF 117
T P +P A NPAPSS L +FQ+ +SP FF
Sbjct: 321 TSARPLDWTPSAIANPAPSSKMRLHGNFLHSFQSISFSPSFF 196
>TC10090 weakly similar to UP|Q9ZWP6 (Q9ZWP6) Lectin, partial (43%)
Length = 461
Score = 28.5 bits (62), Expect = 3.1
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = -1
Query: 494 ITIDKKLVSIANELVEARFELVCRSERITDLEEEIKETKQEAQLALAAKDDALAL 548
+T+++++ + ELVE E+VC + EEE + E LAL D+L L
Sbjct: 185 VTLEEQIRLLWCELVEGEREIVC*VHLVHKQEEEQG*ERSE*LLALETSHDSLQL 21
>TC19805
Length = 530
Score = 28.1 bits (61), Expect = 4.0
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -1
Query: 334 TENPKKKRHQRDNEVCENSNPVRQGTGEKESRTALREKE 372
TEN KKK+H N ++S G + RT REKE
Sbjct: 425 TENYKKKQH*IGNRESQSSKGSSSTKGLSKLRTQAREKE 309
>CN824962
Length = 673
Score = 28.1 bits (61), Expect = 4.0
Identities = 30/115 (26%), Positives = 58/115 (50%)
Frame = +1
Query: 456 ASTAEGEKLQADYTALRTEHAKCDDRLDKVLTEAARDKITIDKKLVSIANELVEARFELV 515
+S G ++ D + +++ D ++ VL++ RD + +D+ + +A++ + +V
Sbjct: 169 SSAVSGTEVPVDQSG-DSQNLVNQDVVNSVLSKF-RD-LNLDENMELVADDQKDE--VIV 333
Query: 516 CRSERITDLEEEIKETKQEAQLALAAKDDALALKDQELTSLRAELEEKKRDLLKK 570
+I DLE+++KE K+ A L+ EL LR E EE ++ LKK
Sbjct: 334 TLFHQIKDLEKQVKEVKEWAHKKAMQAARKLSNDLTELKMLRMEREETQK--LKK 492
>TC9384 similar to UP|Q7XAB8 (Q7XAB8) Light-regulated chloroplast-localized
protein, partial (37%)
Length = 636
Score = 28.1 bits (61), Expect = 4.0
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = -3
Query: 191 WAFMRCFEILC---VAIQVTPSPVHFFYLYDVDAKS 223
W F++C ++ +A+ +T P H +Y +AKS
Sbjct: 562 WVFLQCLDVCLKDGIAVLITRIPFHELLIYSDEAKS 455
>TC19356 similar to UP|O64862 (O64862) At2g44270 protein, partial (41%)
Length = 465
Score = 28.1 bits (61), Expect = 4.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 78 PTNSTRTPRAPCKTSPYAYKNPAPSSLLTFQTPPYS 113
P++ R+ ++ T+ A N +PS L +TPPYS
Sbjct: 106 PSSRMRSTKSSSPTTSSAAANASPSVLPAAKTPPYS 213
>BI418811
Length = 462
Score = 28.1 bits (61), Expect = 4.0
Identities = 19/58 (32%), Positives = 24/58 (40%), Gaps = 3/58 (5%)
Frame = -2
Query: 60 PPALPNVIIRSCHHESRFPTNSTRTPRAP---CKTSPYAYKNPAPSSLLTFQTPPYSP 114
PP L + HH S P +P+AP SPY+ P P + PP SP
Sbjct: 392 PPPLSSSPPPLYHHSSAAPPRPPSSPQAPP*QAHLSPYSAPKP*P-----YPKPPASP 234
>BP063245
Length = 109
Score = 27.7 bits (60), Expect = 5.2
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -1
Query: 72 HHESRFPTNSTRTPRAPCKTSPYAYKNPAPSSLLTFQTPPYSP 114
HH +P TSP+ KN PS+ LTF PP +P
Sbjct: 109 HHHHLYPN-----------TSPF--KNSTPSTKLTFLAPPSTP 20
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.134 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,464,947
Number of Sequences: 28460
Number of extensions: 171914
Number of successful extensions: 1084
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of query: 571
length of database: 4,897,600
effective HSP length: 95
effective length of query: 476
effective length of database: 2,193,900
effective search space: 1044296400
effective search space used: 1044296400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0192.11