BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0192.10
(155 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14188 weakly similar to UP|Q8GVB8 (Q8GVB8) Fw2.2, partial (40%) 343 1e-95
TC14191 weakly similar to UP|Q8GVB8 (Q8GVB8) Fw2.2, partial (31%) 306 8e-85
TC14187 weakly similar to UP|Q9ZTM8 (Q9ZTM8) PGPS/D12, partial (... 220 7e-59
TC14189 weakly similar to UP|Q9ZTM8 (Q9ZTM8) PGPS/D12, partial (... 137 1e-33
BP071096 90 2e-19
TC14190 89 3e-19
TC13962 62 4e-11
TC8642 similar to UP|Q9ASR5 (Q9ASR5) AT4g35920/F4B14_190, partia... 47 1e-06
TC17428 46 3e-06
BP082509 41 1e-04
AV410275 30 0.14
BI418821 30 0.24
AW163889 29 0.32
AW719782 29 0.32
BP066245 29 0.32
AW719453 29 0.41
AV409159 29 0.41
TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding p... 29 0.41
AV420351 29 0.41
TC17058 28 0.54
>TC14188 weakly similar to UP|Q8GVB8 (Q8GVB8) Fw2.2, partial (40%)
Length = 550
Score = 343 bits (879), Expect = 1e-95
Identities = 154/155 (99%), Positives = 155/155 (99%)
Frame = +1
Query: 1 MYKTVAGSTDYQPTPPPPPQPPVEWSTGLYDCFSDYNNCCLTYWCPCVTFGRIAEIVDKG 60
MYKTVAGSTDYQPTPPPPPQPPVEWSTGLYDCFSDYNNCCLTYWCPCVTFGRIAEIVDKG
Sbjct: 28 MYKTVAGSTDYQPTPPPPPQPPVEWSTGLYDCFSDYNNCCLTYWCPCVTFGRIAEIVDKG 207
Query: 61 STSCGASGFYFVQHGVFYSADYRTKIRSQYNLKGNNCLDCLTHCFCSRCALCQEYRELEK 120
STSCGASGFYFVQHGVFYSA+YRTKIRSQYNLKGNNCLDCLTHCFCSRCALCQEYRELEK
Sbjct: 208 STSCGASGFYFVQHGVFYSANYRTKIRSQYNLKGNNCLDCLTHCFCSRCALCQEYRELEK 387
Query: 121 QGFNMKIGWHGNVEQQTRGVAMTSTAPTVEQSMTR 155
QGFNMKIGWHGNVEQQTRGVAMTSTAPTVEQSMTR
Sbjct: 388 QGFNMKIGWHGNVEQQTRGVAMTSTAPTVEQSMTR 492
>TC14191 weakly similar to UP|Q8GVB8 (Q8GVB8) Fw2.2, partial (31%)
Length = 1391
Score = 306 bits (785), Expect = 8e-85
Identities = 148/196 (75%), Positives = 149/196 (75%), Gaps = 41/196 (20%)
Frame = +2
Query: 1 MYKTVAGSTDYQPTPPPPPQPPVEWSTGLYDCFSDYNNCCLTYWCPCVTFGRIAEIVDKG 60
MYKTVAGSTD QPTPPPPPQPPVEWSTGLYDCFSDYNNCCLTYWCPCVTFGRIAEIVDKG
Sbjct: 176 MYKTVAGSTDCQPTPPPPPQPPVEWSTGLYDCFSDYNNCCLTYWCPCVTFGRIAEIVDKG 355
Query: 61 STSCGASGFYFVQHGVFYSADYRTKIRSQYNLKGNNCLDCLTHCFCSRCALCQEYRELEK 120
S SCGASGFYFVQ G YSA+YRTKIRSQYNLKGNNCLDCLTHCFCSRCALCQEYRELEK
Sbjct: 356 SASCGASGFYFVQLGGLYSANYRTKIRSQYNLKGNNCLDCLTHCFCSRCALCQEYRELEK 535
Query: 121 QGFNMK-----------------------------------------IGWHGNVEQQTRG 139
QGFNMK IGWHGNVEQQTRG
Sbjct: 536 QGFNMKINVYLILISSFFLRIIN*CLEDR*ILIINIIFFLLNLID**IGWHGNVEQQTRG 715
Query: 140 VAMTSTAPTVEQSMTR 155
VAMTSTAPTVEQ MTR
Sbjct: 716 VAMTSTAPTVEQGMTR 763
>TC14187 weakly similar to UP|Q9ZTM8 (Q9ZTM8) PGPS/D12, partial (66%)
Length = 1030
Score = 220 bits (561), Expect = 7e-59
Identities = 109/206 (52%), Positives = 126/206 (60%), Gaps = 58/206 (28%)
Frame = +1
Query: 8 STDYQPTPPPPPQPPVEWSTGLYDCFSDYNNCCLTYWCPCVTFGRIAEIVDKGSTSCGAS 67
S+DYQP PPPPP+P VEWSTGL DCFS+ NCC+T WCPCVTFGR+AEIVDKGSTSCGAS
Sbjct: 199 SSDYQPQPPPPPKPLVEWSTGLCDCFSNCGNCCMTCWCPCVTFGRVAEIVDKGSTSCGAS 378
Query: 68 GFYF------VQHGVFYSADYRTKIRSQYNLKGNNCLDCLTHCFCSRCALCQEYRELEKQ 121
G + + G YS YR+K+RSQ++LKGN+CLDCLTHCFC C+LCQEYRELE Q
Sbjct: 379 GALYTLITCLIGCGCLYSCFYRSKMRSQHHLKGNDCLDCLTHCFCESCSLCQEYRELENQ 558
Query: 122 GFNMK----------------------------------------------------IGW 129
GF+MK IGW
Sbjct: 559 GFDMKIGMLYDLLFFLY*DT*CLENTLYF*FIESVLLFFSGLI*LLIKFG*TQLA*LIGW 738
Query: 130 HGNVEQQTRGVAMTSTAPTVEQSMTR 155
HGNVEQ+TRGV M STAP +E M+R
Sbjct: 739 HGNVEQRTRGVQMASTAPAMEHGMSR 816
>TC14189 weakly similar to UP|Q9ZTM8 (Q9ZTM8) PGPS/D12, partial (46%)
Length = 1363
Score = 137 bits (344), Expect = 1e-33
Identities = 59/62 (95%), Positives = 60/62 (96%)
Frame = +2
Query: 1 MYKTVAGSTDYQPTPPPPPQPPVEWSTGLYDCFSDYNNCCLTYWCPCVTFGRIAEIVDKG 60
MYKTVAGSTD QPTPPPPPQPPVEWSTGLYDCFSDYNNCCLTY CPC+TFGRIAEIVDKG
Sbjct: 8 MYKTVAGSTDCQPTPPPPPQPPVEWSTGLYDCFSDYNNCCLTYRCPCITFGRIAEIVDKG 187
Query: 61 ST 62
ST
Sbjct: 188ST 193
Score = 130 bits (326), Expect = 1e-31
Identities = 61/79 (77%), Positives = 66/79 (83%)
Frame = +3
Query: 50 FGRIAEIVDKGSTSCGASGFYFVQHGVFYSADYRTKIRSQYNLKGNNCLDCLTHCFCSRC 109
FG + ++ +CGASGFYFV G YSA+YRTKIRSQYNLKGNN LDCLTHCFCSRC
Sbjct: 246 FGYVMF*INLLHAACGASGFYFVLLGGLYSANYRTKIRSQYNLKGNNWLDCLTHCFCSRC 425
Query: 110 ALCQEYRELEKQGFNMKIG 128
ALCQEYRELEKQGFNMKIG
Sbjct: 426 ALCQEYRELEKQGFNMKIG 482
Score = 63.2 bits (152), Expect = 2e-11
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = +1
Query: 127 IGWHGNVEQQTRGVAMTSTAPTVEQSMTR 155
IGWHGNVEQQTRGVAMTSTAPTVEQSMTR
Sbjct: 613 IGWHGNVEQQTRGVAMTSTAPTVEQSMTR 699
>BP071096
Length = 430
Score = 90.1 bits (222), Expect = 2e-19
Identities = 37/37 (100%), Positives = 37/37 (100%)
Frame = +3
Query: 3 KTVAGSTDYQPTPPPPPQPPVEWSTGLYDCFSDYNNC 39
KTVAGSTDYQPTPPPPPQPPVEWSTGLYDCFSDYNNC
Sbjct: 24 KTVAGSTDYQPTPPPPPQPPVEWSTGLYDCFSDYNNC 134
Score = 89.0 bits (219), Expect = 3e-19
Identities = 38/38 (100%), Positives = 38/38 (100%)
Frame = +1
Query: 40 CLTYWCPCVTFGRIAEIVDKGSTSCGASGFYFVQHGVF 77
CLTYWCPCVTFGRIAEIVDKGSTSCGASGFYFVQHGVF
Sbjct: 316 CLTYWCPCVTFGRIAEIVDKGSTSCGASGFYFVQHGVF 429
>TC14190
Length = 449
Score = 89.4 bits (220), Expect = 3e-19
Identities = 38/55 (69%), Positives = 43/55 (78%)
Frame = +2
Query: 101 LTHCFCSRCALCQEYRELEKQGFNMKIGWHGNVEQQTRGVAMTSTAPTVEQSMTR 155
LTHCFC C+LC EYRELE GF+MKIGWHGNVE + RGV M STAP +E M+R
Sbjct: 2 LTHCFCESCSLCPEYRELENPGFDMKIGWHGNVEPRRRGVPMASTAPAMEHGMSR 166
>TC13962
Length = 429
Score = 62.0 bits (149), Expect = 4e-11
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Frame = +3
Query: 25 WSTGLYDCFSDYNNCCLTYWCPCVTFGRIAEIVDKGSTSCGASGFYFVQ------HGVFY 78
WSTGL+DC + N +T + PCV FG+IAE++D G SC F ++
Sbjct: 189 WSTGLFDCHENQTNAVMTSFLPCVQFGQIAEVLDGGELSCPLGSFIYLLMMPALCTQWIM 368
Query: 79 SADYRTKIRSQYNL 92
+ YRTK+R +Y+L
Sbjct: 369 GSKYRTKLRKKYDL 410
>TC8642 similar to UP|Q9ASR5 (Q9ASR5) AT4g35920/F4B14_190, partial (19%)
Length = 651
Score = 47.0 bits (110), Expect = 1e-06
Identities = 27/83 (32%), Positives = 40/83 (47%), Gaps = 5/83 (6%)
Frame = +3
Query: 47 CVTFGRIAEIVDKGSTSCGASGFYFVQHGVF-----YSADYRTKIRSQYNLKGNNCLDCL 101
C TF +IA + S G + + + + Y+ R K+R N+ G D L
Sbjct: 3 CGTFSKIASVAKNRPISSGEACNELMAYSLILSCCCYTCCVRRKLRKMLNITGGFVDDFL 182
Query: 102 THCFCSRCALCQEYRELEKQGFN 124
+H C CAL QE+RE+E +G N
Sbjct: 183 SHLMCCCCALVQEWREVEIRGAN 251
>TC17428
Length = 595
Score = 45.8 bits (107), Expect = 3e-06
Identities = 25/70 (35%), Positives = 34/70 (47%), Gaps = 4/70 (5%)
Frame = +2
Query: 12 QPTP----PPPPQPPVEWSTGLYDCFSDYNNCCLTYWCPCVTFGRIAEIVDKGSTSCGAS 67
QP P PP +P W TG++ C D NC +CPCV FGR E +++ + G
Sbjct: 251 QPLPESYAPPADEP---WMTGIFGCAEDRENCLTGLFCPCVLFGRNVESLNEDTPWTGPC 421
Query: 68 GFYFVQHGVF 77
V H +F
Sbjct: 422 ----VCHAIF 439
>BP082509
Length = 475
Score = 40.8 bits (94), Expect = 1e-04
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = -1
Query: 86 IRSQYNLKGNNCLDCLTHCFCSRCALCQEYRELE 119
++ +Y+LK + C C HC CALCQE+RE++
Sbjct: 475 LQKKYHLKNSPCSACCVHCCLHWCALCQEHREMK 374
>AV410275
Length = 431
Score = 30.4 bits (67), Expect = 0.14
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 13 PTPPPPPQPPVEWS 26
P PPPPP PP WS
Sbjct: 43 PPPPPPPPPPPSWS 84
Score = 27.3 bits (59), Expect = 1.2
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 8 STDYQPTPPPPPQPP 22
ST P PPPPP PP
Sbjct: 22 STQSLPPPPPPPPPP 66
>BI418821
Length = 614
Score = 29.6 bits (65), Expect = 0.24
Identities = 11/19 (57%), Positives = 13/19 (67%)
Frame = -3
Query: 12 QPTPPPPPQPPVEWSTGLY 30
QP PPPPP PP+ S L+
Sbjct: 393 QPPPPPPPPPPLRLSPPLH 337
>AW163889
Length = 265
Score = 29.3 bits (64), Expect = 0.32
Identities = 10/28 (35%), Positives = 14/28 (49%)
Frame = +1
Query: 25 WSTGLYDCFSDYNNCCLTYWCPCVTFGR 52
W L+DCF + +CPC FG+
Sbjct: 163 WEGDLFDCFDHRRIALESIFCPCYRFGK 246
>AW719782
Length = 428
Score = 29.3 bits (64), Expect = 0.32
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -2
Query: 15 PPPPPQPPVEWST 27
PPPPP P VEW T
Sbjct: 274 PPPPPPPAVEWRT 236
>BP066245
Length = 476
Score = 29.3 bits (64), Expect = 0.32
Identities = 10/13 (76%), Positives = 11/13 (83%)
Frame = +3
Query: 10 DYQPTPPPPPQPP 22
D + TPPPPPQPP
Sbjct: 87 DLENTPPPPPQPP 125
>AW719453
Length = 546
Score = 28.9 bits (63), Expect = 0.41
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 13 PTPPPPPQPPVEWS 26
P PP PP PP++WS
Sbjct: 388 PPPPKPPLPPLDWS 429
>AV409159
Length = 422
Score = 28.9 bits (63), Expect = 0.41
Identities = 10/15 (66%), Positives = 11/15 (72%)
Frame = +2
Query: 13 PTPPPPPQPPVEWST 27
P PPPPPQPP +T
Sbjct: 53 PPPPPPPQPPPSMAT 97
>TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding protein 2,
partial (93%)
Length = 725
Score = 28.9 bits (63), Expect = 0.41
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 13 PTPPPPPQPPVEWST 27
P PPPPP PP W++
Sbjct: 350 PRPPPPPPPPRAWAS 306
Score = 25.4 bits (54), Expect = 4.6
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 13 PTPPPPPQPP 22
P PPPPP PP
Sbjct: 464 PPPPPPPYPP 435
>AV420351
Length = 188
Score = 28.9 bits (63), Expect = 0.41
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 13 PTPPPPPQPPVEWS 26
P PPPPPQPP +S
Sbjct: 69 PPPPPPPQPPQPYS 110
>TC17058
Length = 531
Score = 28.5 bits (62), Expect = 0.54
Identities = 15/39 (38%), Positives = 22/39 (55%), Gaps = 4/39 (10%)
Frame = -1
Query: 10 DYQPTPPPPPQPPV-EWSTGLYDCFS---DYNNCCLTYW 44
++Q PP PPQPP+ + L+D S N CC+ +W
Sbjct: 180 NHQYPPPQPPQPPLSDNPCTLFDPTSLLLIVNCCCIFFW 64
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.136 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,327,357
Number of Sequences: 28460
Number of extensions: 97757
Number of successful extensions: 3263
Number of sequences better than 10.0: 237
Number of HSP's better than 10.0 without gapping: 1664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2634
length of query: 155
length of database: 4,897,600
effective HSP length: 83
effective length of query: 72
effective length of database: 2,535,420
effective search space: 182550240
effective search space used: 182550240
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0192.10