BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0191.8
(1758 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18710 184 1e-46
CN825238 142 6e-34
TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, p... 136 2e-32
TC9793 105 1e-28
AV780705 122 5e-28
AU251850 103 2e-22
AV767121 101 1e-21
TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA po... 96 4e-20
AV411435 86 7e-17
BP060613 83 4e-16
AV780221 81 1e-15
AV768060 75 7e-14
TC11350 similar to UP|Q9LJP7 (Q9LJP7) Genomic DNA, chromosome 3,... 72 6e-13
CN825682 66 5e-11
TC12829 64 3e-10
BP033174 59 9e-09
TC13242 47 9e-09
BP053577 58 1e-08
CB827358 53 4e-08
TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%) 53 4e-07
>TC18710
Length = 843
Score = 184 bits (467), Expect = 1e-46
Identities = 95/218 (43%), Positives = 128/218 (58%)
Frame = +2
Query: 851 GPDGFPALFYQKYWKLVGGDVTSQVLEILNKGVDPASLNQTFICLIPKVKAPENPMEFRP 910
G DG LFYQK +V VT +L L + P +N+T + LIPKV PE+ +FRP
Sbjct: 188 GMDGMNGLFYQKNGDVVKDSVT*AILAFLERAEIPNEINETLVTLIPKVPHPESINQFRP 367
Query: 911 ISLCNVIMKLVTKCIANRIKDVLGEVVGEQQSAFIPGRLITDNALTGFEVFHYMKKKRKG 970
IS C + K+++K R+KD + +++ QS FI GR I DN L E FH + +
Sbjct: 368 ISGCTFLYKVISKIFVARLKDAMPDLISPMQSGFIQGRQIQDNLLIVQEAFHAINRPGAL 547
Query: 971 KKGYMALKLDMSKAYDRIEWDFLKQVLTTMGFPSKITELISICVSSVSYSLLVNGEPSPP 1030
+ + +KLDM+KAYDR+EW FL+ L GF + ++I I VS VSY+ +NG P
Sbjct: 548 GRNHSIIKLDMNKAYDRVEWKFLESSLLAFGFSTNWVKMIMILVSGVSYNYKINGVVGPK 727
Query: 1031 FSPQRGLRQGDPLSPYLFILCVEAFSGLISNQIRLRNL 1068
PQRGLRQGDP SPYLF+ +E S LI N + NL
Sbjct: 728 LLPQRGLRQGDPFSPYLFLFTMEVLSLLIQNSFNMGNL 841
>CN825238
Length = 692
Score = 142 bits (357), Expect = 6e-34
Identities = 65/125 (52%), Positives = 82/125 (65%)
Frame = +3
Query: 1376 WNISKIDQLFNPAEAQLIKSIRLSWRDSEDKLIWRWSRDGMFSVKSAYYQIQSQKIAATA 1435
WN+ IDQLF A +IKSI L WR + + +WRWSR+G FSV+SAYY IQ K T+
Sbjct: 321 WNVQLIDQLFPKETAAVIKSIPLGWRTTRNSCLWRWSRNGAFSVRSAYYNIQVAKEMQTS 500
Query: 1436 SGSNSPSFSWKTLWRVKIQNKVKHFMYRVINNLTPCRANLARRGIQIQEQCALCSQDVVE 1495
S + S SF WK LWR + NK+KHF YRV N+ PCR NL RRGI +Q +C C+ + E
Sbjct: 501 SSAAS-SFPWKKLWRTPVPNKMKHFAYRVARNIIPCRENLQRRGIAVQNECPTCNHQIPE 677
Query: 1496 TQDHL 1500
+ HL
Sbjct: 678 SMSHL 692
>TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, partial
(14%)
Length = 592
Score = 136 bits (343), Expect = 2e-32
Identities = 73/182 (40%), Positives = 101/182 (55%)
Frame = -3
Query: 749 LKEGDKNTSFFHGKANQRQKQNRIARIRDDHGNWVYKQDQVTTAFSNYFEGIFKSSQPNN 808
LK GD NT FFH QR+ NRI +I+D HG WV Q +V A NYF I+ SS
Sbjct: 578 LK*GDHNTRFFHASTIQRRDFNRILKIKDAHGIWVEGQKKVNEAAVNYFSDIYSSSPLQY 399
Query: 809 IEEVCQKIQNKLNQEMREHLEEEFTADEVAYALNQMHPLKAPGPDGFPALFYQKYWKLVG 868
+ E I + + L + + DE+ A+ M LKAPG DG LFYQ+ ++V
Sbjct: 398 LRECLAPIPKLVTDRLNHKLCAQVSTDEIKEAVFSMGDLKAPGMDGINGLFYQQNREIVK 219
Query: 869 GDVTSQVLEILNKGVDPASLNQTFICLIPKVKAPENPMEFRPISLCNVIMKLVTKCIANR 928
DV + +L+ + G P LN+T + LIPK+ E +FRPIS C+ I K+++K I R
Sbjct: 218 NDVNNAILDFFDHGELPVELNETLVTLIPKIPHAEAIQQFRPISCCSFIYKVISKIIVAR 39
Query: 929 IK 930
+K
Sbjct: 38 LK 33
>TC9793
Length = 568
Score = 105 bits (262), Expect(2) = 1e-28
Identities = 50/139 (35%), Positives = 81/139 (57%)
Frame = +2
Query: 1582 EWKEAQEHHAPCVQEKRPQQWSAPSQGRIKINVDAGWSGPHSTGLGFVARDHRGIIMLAG 1641
EW +AQ+ ++ R W P +G IK+N+DAGWSG STG VAR H ++++A
Sbjct: 2 EWTDAQDRKESSIEAPRRMVWEPPPEGIIKVNIDAGWSGSCSTGFSLVARSHNAVMLVAA 181
Query: 1642 TCLEAQRLDPLIAEAMALRWSLHTALEVSLDSVIFKLDSISVVKAMRTNSSLWTIQNLM* 1701
T LE +++P +AEA+ALRW L E+ ++ +I + S+ V+ + + I+ ++
Sbjct: 182 THLEETQIEPTLAEALALRWCLSMIKEMEMERIIVESYSLVVLNTLHQKTKRPDIELVVY 361
Query: 1702 DCIYLASLFTSISFNHVSR 1720
D LA+ F I+F H+ R
Sbjct: 362 DSRELAAEFNFINFKHIGR 418
Score = 40.0 bits (92), Expect(2) = 1e-28
Identities = 16/30 (53%), Positives = 21/30 (69%)
Frame = +3
Query: 1726 AHTLASLACSYNTKLWWDVPPPEIEQALFV 1755
AH LA+LA Y K+WWDV P + +A+FV
Sbjct: 435 AHVLAALAVDYPDKVWWDVSPRALAEAIFV 524
>AV780705
Length = 524
Score = 122 bits (306), Expect = 5e-28
Identities = 63/143 (44%), Positives = 90/143 (62%), Gaps = 1/143 (0%)
Frame = -2
Query: 1154 YLGLPTVIGHSKKAIFGKIQERVWRKLKGWKEKTLSKAGKEILIKAVAQAIPSYVMSCFK 1213
YLGLP + G +K I+E+V KL+GWKE L++AGKE+LIKA+ QAIPSY M+
Sbjct: 484 YLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAIIQAIPSYAMTIVH 305
Query: 1214 LPNGICSKIESLLANFWW-GQKENERKIHWAAWQHLCKTKNRGDLGFRNLEDFNRALLAK 1272
P C+ + +L+A+FWW Q E + A +K +G +GFR+L N A LA+
Sbjct: 304 FPKTFCNSLYALVADFWWKSQGEGAVEYTGAVGTK*PLSKEKGGVGFRDLRTQNLAFLAR 125
Query: 1273 QAWRLLNSEKSLLYKVWKAKYFP 1295
QAWR+L + ++L +V K+ YFP
Sbjct: 124 QAWRVLTNPEALWVRVMKSLYFP 56
>AU251850
Length = 343
Score = 103 bits (257), Expect = 2e-22
Identities = 49/111 (44%), Positives = 68/111 (61%)
Frame = +2
Query: 386 GGAGRPALPGAMKTISWNCRGVGSPRTVKVLQRIIKAEDPDIVFLMETHKKNGELKNIVA 445
G GRP P AMK +SWNCRG+GSPR V+ LQR+++ E P +VFLMET K E + I
Sbjct: 5 GVVGRPTSPTAMKLLSWNCRGLGSPRAVEALQRLVRKEIPQLVFLMETKLKKFETEKISL 184
Query: 446 RLGFKNHLGVECRGEGRSSGGGLALLWKEDFNIDIISYSLHHITASHTNAD 496
G N L V+C G+ + GGLA+ W ++ ++S+S +HI + D
Sbjct: 185 GFGLSNCLIVDCVGDEKERKGGLAMWWNASVDVSLVSFSGNHIVVACVEDD 337
>AV767121
Length = 525
Score = 101 bits (251), Expect = 1e-21
Identities = 58/170 (34%), Positives = 80/170 (46%), Gaps = 5/170 (2%)
Frame = +2
Query: 1180 LKGWKEKTLSKAGKEILIKAVAQAIPSYVMSCFKLPNGICSKIESLLANFWWGQKENERK 1239
L WK+KT+S G+ LI++V A+P + +S FKLP G+ L+ NF WG ENE K
Sbjct: 2 LSKWKQKTVSFGGRIFLIQSVLTALPLFFLSFFKLPIGVGKSCVRLMRNFLWGGSENENK 181
Query: 1240 IHWAAWQHLCKTKNRGDLGFRNLEDFNRALLAKQAWRLLNSEKSLLYKVWKAKYFPKCDL 1299
I W +CK K G LG ++L FN+ALL K WR L SL W+ + D
Sbjct: 182 IA*VKWTDVCKPKELGGLGIKDLFTFNKALLGK*RWRYLTEPDSL----WRRVIEAQPDH 349
Query: 1300 LKAGVGYQPSYAWRSVWGTLK-----FIEEGCKWSIGNGKKVSIWKDPWL 1344
G + W + + G K +G G + W + WL
Sbjct: 350 YSCGSSW-----WNDILSLCPEDADGWFSSGLKKLVGEGDQTKFWSEDWL 484
>TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA
polymerase-like protein, partial (3%)
Length = 530
Score = 96.3 bits (238), Expect = 4e-20
Identities = 51/170 (30%), Positives = 88/170 (51%), Gaps = 8/170 (4%)
Frame = -3
Query: 663 LRQAWQSGGDNAEQKLA----QAKETIMAL----ETEFGSIRKKLHDLEQRLKAAQKWNP 714
+++AW + + A + + T +AL F K++ +L+ +L+ Q ++
Sbjct: 513 IKKAWDNTSETASSHCSNLSGKTTNTKLALTEWHHQNFSRADKEIAELKNQLEHLQNYSN 334
Query: 715 TEENIMRRKEMENEFAELMGREELYWRQRSRATWLKEGDKNTSFFHGKANQRQKQNRIAR 774
+ E+ K+ + +L +EEL+W QRSR WLK GDKNT FFH QR+++NRI R
Sbjct: 333 SGEDWQEIKQRKMRLKDLWRQEELFWSQRSRIKWLKSGDKNTKFFHASTVQRRERNRIER 154
Query: 775 IRDDHGNWVYKQDQVTTAFSNYFEGIFKSSQPNNIEEVCQKIQNKLNQEM 824
I+D G WV Q + +++ I+KS+ NI E + + + +
Sbjct: 153 IKDMQGTWVRSQLAINRDVPDFYPDIYKSTNRQNITECLNAVPRVIYESL 4
>AV411435
Length = 426
Score = 85.5 bits (210), Expect = 7e-17
Identities = 42/113 (37%), Positives = 65/113 (57%), Gaps = 3/113 (2%)
Frame = +3
Query: 1403 SEDKLIWRWSRDGMFSVKSAYYQIQSQK--IAATASGSNSPS-FSWKTLWRVKIQNKVKH 1459
SED+L W + G +SVKS Y +++ + ++ AS S+ PS F W T+W ++ KV+
Sbjct: 33 SEDRLFWPFIPSGEYSVKSGYRAVKATQFNLSNLASSSSHPSSFLWHTIWGAQVPKKVRS 212
Query: 1460 FMYRVINNLTPCRANLARRGIQIQEQCALCSQDVVETQDHLFLQCSWARAAWF 1512
F++R NN P + NL RR + + C +C++ E +H L C W RA WF
Sbjct: 213 FLWRAANNAIPVKRNLKRRNMGRDDFCPICNKG-PEDINHALLACEWTRAVWF 368
>BP060613
Length = 378
Score = 82.8 bits (203), Expect = 4e-16
Identities = 40/107 (37%), Positives = 62/107 (57%)
Frame = +1
Query: 1230 WWGQKENERKIHWAAWQHLCKTKNRGDLGFRNLEDFNRALLAKQAWRLLNSEKSLLYKVW 1289
WW K R +HW W L + K+ G LGF++ E N+ALLAKQAWR+L++ +L ++
Sbjct: 46 WWSSK-GTRGVHWRKWDLLTELKDEGGLGFKDFEIQNQALLAKQAWRILHNPDALWVQIL 222
Query: 1290 KAKYFPKCDLLKAGVGYQPSYAWRSVWGTLKFIEEGCKWSIGNGKKV 1336
KA YFP D L+ S+ W S+ + + + +W +G+G+ V
Sbjct: 223 KALYFPHHDFLQTTKRTGASWVWSSLLHGRELLLKQGQWQLGSGETV 363
>AV780221
Length = 461
Score = 81.3 bits (199), Expect = 1e-15
Identities = 52/157 (33%), Positives = 74/157 (47%), Gaps = 8/157 (5%)
Frame = +3
Query: 1196 LIKAVAQAIPSYVMSCFKLPNG-ICSKIESLLANFWWGQKENERKIHWAAWQHLCKTKNR 1254
LI++V A+P + + FKLP G + + + F+ + E +KI W W +C+ K+
Sbjct: 9 LIRSVLIALPLFHLPFFKLPTGGFYTNVNN**DPFFGREVEGGKKIAWVKWSTVCRPKDE 188
Query: 1255 GDLGFRNLEDFNRALLAKQAWRLLNSEKSLLYKVWKAKYFPKCDLLKAGVGYQPSYAWRS 1314
G LG +NL FN+ALL K WR+L L YKV KY K + S W
Sbjct: 189 GGLGVQNLGLFNKALLGKWRWRMLKERDGLWYKVLLIKY-------KNAIPQSASSWWND 347
Query: 1315 VWGTLKFIEEGCKW-------SIGNGKKVSIWKDPWL 1344
+ T F + G W IG G +V W + WL
Sbjct: 348 LHSTC-FEDGGGGWMQRGLCRRIGEGTEVKFWNENWL 455
>AV768060
Length = 416
Score = 75.5 bits (184), Expect = 7e-14
Identities = 41/104 (39%), Positives = 55/104 (52%)
Frame = -3
Query: 1643 CLEAQRLDPLIAEAMALRWSLHTALEVSLDSVIFKLDSISVVKAMRTNSSLWTIQNLM*D 1702
C E R +PLIAEAM RW+L+ A LDS++F D +VKA S ++ ++M D
Sbjct: 324 CYEDCRREPLIAEAMCFRWALNLAANWGLDSLVFSSDCQQLVKAFHCPSEFPSLAHIMLD 145
Query: 1703 CIYLASLFTSISFNHVSRNANVPAHTLASLACSYNTKLWWDVPP 1746
C L + F + SF R N AH LA+ + Y WW PP
Sbjct: 144 CTQLVNSFRNFSFCFEYRQTNRVAHALAAESHLYKDCEWWGDPP 13
>TC11350 similar to UP|Q9LJP7 (Q9LJP7) Genomic DNA, chromosome 3, P1 clone:
MIG10, partial (18%)
Length = 1118
Score = 72.4 bits (176), Expect = 6e-13
Identities = 51/183 (27%), Positives = 87/183 (46%), Gaps = 10/183 (5%)
Frame = -3
Query: 1518 LRMDLVQTSFLEWLQSFCANQEDEIVAQVFHGTWAIWKARNESLFNNVQVHPATA----- 1572
LR D +++ + N E+++ F WAIWK RN +F + +P
Sbjct: 1071 LRFDRWFVERSQFILNHSLNHEEDLATLSFT-LWAIWKNRNRVIFQLEEPNPVNTIFQIR 895
Query: 1573 -MEKAQNLLAEW---KEAQEHHAPCVQEKRPQQWSAPSQGRIKINVDAGWSGPH-STGLG 1627
M++ NL++ K+ V R + W P G K+N DA W P S +G
Sbjct: 894 HMQQDANLMSTSQSNKQTTRERNINVTSARDRSWRPPPLGVYKLNSDASWKAPSPSCTVG 715
Query: 1628 FVARDHRGIIMLAGTCLEAQRLDPLIAEAMALRWSLHTALEVSLDSVIFKLDSISVVKAM 1687
V RD+ G ++++GT P+++EA+ALR L A + LD ++ + D +++A
Sbjct: 714 VVIRDNLG-LLISGTASRPLAPSPIVSEALALREGLILARSLGLDRILSESDCQPLIEAC 538
Query: 1688 RTN 1690
R++
Sbjct: 537 RSS 529
>CN825682
Length = 626
Score = 65.9 bits (159), Expect = 5e-11
Identities = 33/104 (31%), Positives = 59/104 (56%)
Frame = -3
Query: 523 RLKGETSGPWMCFGDFNEITSNAEKKGGIDRPIEHMKKFVRCLNQCGLEDMGFQGDPFTW 582
+ K T+ W C+GDFNEI + EK+G D+ ++ F L+ L D+ +G FTW
Sbjct: 327 KFKSNTNTFWTCYGDFNEILHHQEKEGARDQDPTRIQVFRDFLDGANLMDLELKGCRFTW 148
Query: 583 CNGRKDEAHIQERLDRGVISQSFKEIWPASSVQHLLRYNSDHAP 626
+ ++ +ERLDR +++ +++ +P ++ L +SDH+P
Sbjct: 147 LSNLRNGLVTKERLDRVLVNWTWRLDYPNATAMALPIISSDHSP 16
>TC12829
Length = 448
Score = 63.5 bits (153), Expect = 3e-10
Identities = 29/60 (48%), Positives = 42/60 (69%), Gaps = 2/60 (3%)
Frame = +3
Query: 1185 EKTLSKAGKEILIKAVAQAIPSYVMSCFKLPNGICSKIESLLANFW--WGQKENERKIHW 1242
EK L +AG+E+LIK+V +AIP+Y+MSCF LP+ ICS+IE ++ F+ W E + W
Sbjct: 252 EKFLYRAGREVLIKSVTKAIPTYIMSCFALPDSICSQIEGMVGKFYLEW*CVSEEYSLAW 431
Score = 31.6 bits (70), Expect = 1.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 1221 KIESLLANFWWGQKENERKIHWAAWQHLC 1249
++++ L +F W + R IHW W+ LC
Sbjct: 361 RLKAWLVSFIWSGDVSRRSIHWLGWKKLC 447
>BP033174
Length = 510
Score = 58.5 bits (140), Expect = 9e-09
Identities = 36/116 (31%), Positives = 62/116 (53%)
Frame = -1
Query: 1601 QWSAPSQGRIKINVDAGWSGPHSTGLGFVARDHRGIIMLAGTCLEAQRLDPLIAEAMALR 1660
+W P+ +K+N D GW G +GLG + +G A T +D ++AE++AL
Sbjct: 399 KWLPPAPKVLKVNGDVGWRG--ESGLGICS--SQGEFCNAATHYIETTVDHVVAESLALT 232
Query: 1661 WSLHTALEVSLDSVIFKLDSISVVKAMRTNSSLWTIQNLM*DCIYLASLFTSISFN 1716
W L A+E L+ V +++++ ++KA + I +++ DC LAS F S + N
Sbjct: 231 WCLKNAVE*QLNCVEVEINALFLIKAFNDMDYVPIISHIVQDCRTLASNFQSFTLN 64
>TC13242
Length = 567
Score = 47.4 bits (111), Expect(2) = 9e-09
Identities = 25/68 (36%), Positives = 37/68 (53%)
Frame = +1
Query: 1617 GWSGPHSTGLGFVARDHRGIIMLAGTCLEAQRLDPLIAEAMALRWSLHTALEVSLDSVIF 1676
G G G V RDH G M A T +++ +AEA ALRW+L E+ +D+++
Sbjct: 352 GGPGGRGQGAAMVVRDHHGECMYAATEYFTAQVEATMAEAKALRWTLLRLQELGIDALVV 531
Query: 1677 KLDSISVV 1684
++DS VV
Sbjct: 532 EMDSQLVV 555
Score = 30.8 bits (68), Expect(2) = 9e-09
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 1603 SAPSQGRIKINVDAGWSG 1620
S P G +K+N+DAGWSG
Sbjct: 309 SPPVAGMLKVNIDAGWSG 362
>BP053577
Length = 463
Score = 57.8 bits (138), Expect = 1e-08
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Frame = +3
Query: 1625 GLGFVARDHRGIIMLAGTCLEAQRLDPLIAEAMALRWSLHTALEVSLDSVIFKLDSISVV 1684
GLG VAR+ G +M + PL+AEA+ LRW++ A ++ + + D + +
Sbjct: 15 GLGMVARNCDGEVMASACSSPVSISSPLLAEALGLRWTMQLATDLGFRRITLETDCLQLF 194
Query: 1685 KAMRTNSSLWT-IQNLM*DCIYLASLFTSISFNHVSRNANVPAHTLASLACSYNTKLWWD 1743
R+ + + +++ DC L S F +S + V R N A LA + +Y +W +
Sbjct: 195 NTWRSQEEGRSYLSSIISDCRILISAFDYVSVSFVRRTGNTVADFLARNSDTYANMVWVE 374
Query: 1744 VPPPEIEQALFVD 1756
P + + D
Sbjct: 375 EVPLTVVSLIDAD 413
>CB827358
Length = 453
Score = 52.8 bits (125), Expect(2) = 4e-08
Identities = 29/111 (26%), Positives = 51/111 (45%)
Frame = +2
Query: 1530 WLQSFCANQEDEIVAQVFHGTWAIWKARNESLFNNVQVHPATAMEKAQNLLAEWKEAQEH 1589
+L F + ++VA + A+W+A N+ +F V A+++A ++ +
Sbjct: 125 FLLQFLVEADSDVVASCQMASCALWEAHNKLIFQEVPFRCEAAIQRATSMSQVDVSTVDP 304
Query: 1590 HAPCVQEKRPQQWSAPSQGRIKINVDAGWSGPHSTGLGFVARDHRGIIMLA 1640
A W P +G K+N D W +G+G VAR+H G+I+ A
Sbjct: 305 SAN--GPVHDAIWRRPPRGVFKVNFDGSWKSDSVSGIGMVARNHDGLILAA 451
Score = 23.1 bits (48), Expect(2) = 4e-08
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +3
Query: 1471 CRANLARRGIQIQEQCALCSQD 1492
CR +L R+G+ C LC +
Sbjct: 48 CR*SLWRKGVNSDPSCPLCGNE 113
>TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%)
Length = 912
Score = 53.1 bits (126), Expect = 4e-07
Identities = 36/121 (29%), Positives = 64/121 (52%)
Frame = -3
Query: 1080 INHLFFADDSLIFSRATQEEASSLLDVIRQYEQASGQLVNMDKSEISFSRNVPQTSMDTI 1139
I+HL FAD+ ++FS E + + +V+ ++ SG N KSE+ V +T+ + I
Sbjct: 373 ISHLCFADNLMVFSNGYLESIAIINNVLHIFQHLSGLTPNPAKSEVFIL--VKETTKNQI 200
Query: 1140 RNRMGVKAVIVHDKYLGLPTVIGHSKKAIFGKIQERVWRKLKGWKEKTLSKAGKEILIKA 1199
N +G K + + LG+P + K + + +R KL+ W ++LS AG+ LI +
Sbjct: 199 TNMLGYKEGKLPVR*LGVPQLTTKLKASDCKVLVDRKPSKLQHWTGRSLSYAGRLQLINS 20
Query: 1200 V 1200
+
Sbjct: 19 I 17
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.329 0.141 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,842,882
Number of Sequences: 28460
Number of extensions: 539409
Number of successful extensions: 3642
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 3569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3631
length of query: 1758
length of database: 4,897,600
effective HSP length: 103
effective length of query: 1655
effective length of database: 1,966,220
effective search space: 3254094100
effective search space used: 3254094100
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0191.8