TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0191.15
         (398 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC7998 homologue to UP|HEM6_SOYBN (P35055) Coproporphyrinogen II...   830  0.0
AV418910                                                              164  3e-41
TC19408 homologue to PIR|S39523|S39523 coproporphyrinogen oxidas...   157  3e-39
BP061811                                                               37  0.004
TC14620                                                                31  0.32
TC17970                                                                27  4.6
TC18748 similar to GB|AAN28890.1|23506061|AY143951 At4g02590/T10...    27  4.6
TC8032 similar to UP|Q9M0B6 (Q9M0B6) Nucleotide sugar epimerase-...    27  6.0
TC16449 similar to UP|Q940R4 (Q940R4) AT4g16560/dl4305c, partial...    27  6.0
BI419489                                                               27  6.0
BP052607                                                               27  6.0
BP040276                                                               27  7.8
AV778807                                                               27  7.8
TC14844 similar to UP|Q8L553 (Q8L553) SCARECROW transcriptional ...    27  7.8

>TC7998 homologue to UP|HEM6_SOYBN (P35055) Coproporphyrinogen III oxidase,
           chloroplast precursor  (Coproporphyrinogenase) (Coprogen
           oxidase) , partial (88%)
          Length = 1573

 Score =  830 bits (2144), Expect = 0.0
 Identities = 398/398 (100%), Positives = 398/398 (100%)
 Frame = +2

Query: 1   MPSCATIVSPPSYAIPFFTSTSSTSSPTAKLLSKRRWNPLIQTKTMTSLGSKGAVRAGVS 60
           MPSCATIVSPPSYAIPFFTSTSSTSSPTAKLLSKRRWNPLIQTKTMTSLGSKGAVRAGVS
Sbjct: 62  MPSCATIVSPPSYAIPFFTSTSSTSSPTAKLLSKRRWNPLIQTKTMTSLGSKGAVRAGVS 241

Query: 61  IEKETPEAERPETFLRGGDTAEALSSSSSVRARFEKMIREAQDSVCDAIEAADGGAKFKE 120
           IEKETPEAERPETFLRGGDTAEALSSSSSVRARFEKMIREAQDSVCDAIEAADGGAKFKE
Sbjct: 242 IEKETPEAERPETFLRGGDTAEALSSSSSVRARFEKMIREAQDSVCDAIEAADGGAKFKE 421

Query: 121 DVWSRPGGGGGISRVLQDGAVWEKAGVNVSVVYGVMPPDAYRAAKGAAASPDEKPGPVPF 180
           DVWSRPGGGGGISRVLQDGAVWEKAGVNVSVVYGVMPPDAYRAAKGAAASPDEKPGPVPF
Sbjct: 422 DVWSRPGGGGGISRVLQDGAVWEKAGVNVSVVYGVMPPDAYRAAKGAAASPDEKPGPVPF 601

Query: 181 FAAGISSVLHPKNPFAPTMHFNYRYFETDAPKDAPGAPKQWWFGGGTDLTPAYIFEEDVK 240
           FAAGISSVLHPKNPFAPTMHFNYRYFETDAPKDAPGAPKQWWFGGGTDLTPAYIFEEDVK
Sbjct: 602 FAAGISSVLHPKNPFAPTMHFNYRYFETDAPKDAPGAPKQWWFGGGTDLTPAYIFEEDVK 781

Query: 241 HFHSIQKQACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGIFFDDLNDYDQEMLLSFA 300
           HFHSIQKQACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGIFFDDLNDYDQEMLLSFA
Sbjct: 782 HFHSIQKQACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGIFFDDLNDYDQEMLLSFA 961

Query: 301 TECANSVVPSYIPIIEKRKDTPFTDHQKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIE 360
           TECANSVVPSYIPIIEKRKDTPFTDHQKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIE
Sbjct: 962 TECANSVVPSYIPIIEKRKDTPFTDHQKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIE 1141

Query: 361 SILVSLPLTSRWEYDHKPEEGSEEWKLLDACINPKEWI 398
           SILVSLPLTSRWEYDHKPEEGSEEWKLLDACINPKEWI
Sbjct: 1142SILVSLPLTSRWEYDHKPEEGSEEWKLLDACINPKEWI 1255


>AV418910 
          Length = 298

 Score =  164 bits (414), Expect = 3e-41
 Identities = 86/102 (84%), Positives = 88/102 (85%)
 Frame = +2

Query: 42  QTKTMTSLGSKGAVRAGVSIEKETPEAERPETFLRGGDTAEALSSSSSVRARFEKMIREA 101
           +TKTM S   K  VRA VSIEKETPEAERPETFLRGGD A A + S SVRARFEKMIREA
Sbjct: 2   ETKTMRS--KKSVVRATVSIEKETPEAERPETFLRGGDAATA-AESLSVRARFEKMIREA 172

Query: 102 QDSVCDAIEAADGGAKFKEDVWSRPGGGGGISRVLQDGAVWE 143
           QDSVCDAIEAADGG KFKEDVWSRPGGGGGISRVLQDG VWE
Sbjct: 173 QDSVCDAIEAADGGGKFKEDVWSRPGGGGGISRVLQDGVVWE 298


>TC19408 homologue to PIR|S39523|S39523 coproporphyrinogen oxidase
           precursor - soybean {Glycine max;}  , partial (19%)
          Length = 593

 Score =  157 bits (397), Expect = 3e-39
 Identities = 71/73 (97%), Positives = 73/73 (99%)
 Frame = +2

Query: 326 HQKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTSRWEYDHKPEEGSEEW 385
           HQKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLT+RWEYDHKPEEGSEEW
Sbjct: 2   HQKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHKPEEGSEEW 181

Query: 386 KLLDACINPKEWI 398
           KLLDAC+NPKEWI
Sbjct: 182 KLLDACMNPKEWI 220


>BP061811 
          Length = 492

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = -3

Query: 320 DTPFTDHQKAWQQLRRG 336
           DTPFTDHQKAWQ LR G
Sbjct: 490 DTPFTDHQKAWQLLRMG 440


>TC14620 
          Length = 1260

 Score = 31.2 bits (69), Expect = 0.32
 Identities = 22/82 (26%), Positives = 35/82 (41%)
 Frame = -2

Query: 79  DTAEALSSSSSVRARFEKMIREAQDSVCDAIEAADGGAKFKEDVWSRPGGGGGISRVLQD 138
           + A + ++  SV AR   + R  + +  DA+    G A           GGGG+  + + 
Sbjct: 455 EEAHSAAAKGSVLARLRPVTRRVEPAFEDAVGEVAGVASVAVSFAEVRAGGGGVVVLARV 276

Query: 139 GAVWEKAGVNVSVVYGVMPPDA 160
            A    AGV V  +  V+ P A
Sbjct: 275 SATGFLAGVGVGAICPVVWPAA 210


>TC17970 
          Length = 542

 Score = 27.3 bits (59), Expect = 4.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 1   MPSCATIVSPPSYAIPFFTSTSSTSSPTAKLLS 33
           +P   +   PP  A PF  ST+S SSPT   L+
Sbjct: 255 VPELTSPSLPPPTASPFKPSTASRSSPTLPFLT 353


>TC18748 similar to GB|AAN28890.1|23506061|AY143951 At4g02590/T10P11_13
           {Arabidopsis thaliana;}, partial (36%)
          Length = 803

 Score = 27.3 bits (59), Expect = 4.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 120 EDVWSRPGGGGGISRVLQDGAVWEK 144
           ED+     GGGG+ RV++  +VW +
Sbjct: 153 EDLLEEVVGGGGVGRVIRHDSVWTR 79


>TC8032 similar to UP|Q9M0B6 (Q9M0B6) Nucleotide sugar epimerase-like
           protein, partial (97%)
          Length = 2230

 Score = 26.9 bits (58), Expect = 6.0
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 9   SPPSYAIPFFTSTSSTSSPTAKLLSKRRWNPLI 41
           +P    IP FT+TS  SSP+ K  + +  NPL+
Sbjct: 694 TPWRILIPTFTATSPPSSPSWKPANLQTRNPLL 792


>TC16449 similar to UP|Q940R4 (Q940R4) AT4g16560/dl4305c, partial (18%)
          Length = 613

 Score = 26.9 bits (58), Expect = 6.0
 Identities = 25/70 (35%), Positives = 29/70 (40%), Gaps = 11/70 (15%)
 Frame = -2

Query: 117 KFKEDVWSRPGGGGGISRVLQDGAVWEKAG--------VNVSVVYGVMPPD---AYRAAK 165
           K  E V    GGGGG+  VL +G  W   G          +SV+ GV P D     RA  
Sbjct: 276 KVAERVGVVGGGGGGVGSVLLNGLRWF*GGGGYC*IGIWKLSVLRGVGPFDMSVKCRA*S 97

Query: 166 GAAASPDEKP 175
            A     EKP
Sbjct: 96  RAETGEKEKP 67


>BI419489 
          Length = 479

 Score = 26.9 bits (58), Expect = 6.0
 Identities = 21/88 (23%), Positives = 37/88 (41%)
 Frame = +2

Query: 2   PSCATIVSPPSYAIPFFTSTSSTSSPTAKLLSKRRWNPLIQTKTMTSLGSKGAVRAGVSI 61
           P+     SPP  A P     +S+++PTAK     R        T  S+ +  + ++  S 
Sbjct: 107 PTAYLTASPPPTATPAAL*KTSSTTPTAKCTVPSRTTTAATAPTGASVAAAASGQSSSSS 286

Query: 62  EKETPEAERPETFLRGGDTAEALSSSSS 89
              +P    P    R   ++ AL++ +S
Sbjct: 287 SPRSP----PPLSARHSTSSTALTARNS 358


>BP052607 
          Length = 466

 Score = 26.9 bits (58), Expect = 6.0
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 179 PFFAAGISSVLHPKNPFAP 197
           P FAAG SSV+ P+ P AP
Sbjct: 334 PEFAAGSSSVVRPQGPGAP 278


>BP040276 
          Length = 556

 Score = 26.6 bits (57), Expect = 7.8
 Identities = 13/32 (40%), Positives = 19/32 (58%)
 Frame = +1

Query: 163 AAKGAAASPDEKPGPVPFFAAGISSVLHPKNP 194
           A  GAAASP+  P P P ++  +S+   P +P
Sbjct: 112 AMSGAAASPNHSPSPSP-WSQIVSAAAPPSSP 204


>AV778807 
          Length = 590

 Score = 26.6 bits (57), Expect = 7.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 13  YAIPFFTSTSSTSSPTAKLLSKRRWN 38
           Y  P+F + +ST  PT+K+   + WN
Sbjct: 161 YLSPWFAAINSTQLPTSKVHRSKFWN 238


>TC14844 similar to UP|Q8L553 (Q8L553) SCARECROW transcriptional
           regulator-like, partial (49%)
          Length = 1051

 Score = 26.6 bits (57), Expect = 7.8
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -3

Query: 11  PSYAIPFFTSTSSTSSPTAKLLSKRRWNPLIQTKTMTSLGSKGAVRAGVS 60
           P +AIP FTS      PT  LL       L + + +  +  +  VRA +S
Sbjct: 536 PLHAIPPFTSHRVPHLPTQSLLDLHTLQALTRHRGLNRVKQRAVVRARLS 387


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.135    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,762,133
Number of Sequences: 28460
Number of extensions: 114944
Number of successful extensions: 714
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of query: 398
length of database: 4,897,600
effective HSP length: 92
effective length of query: 306
effective length of database: 2,279,280
effective search space: 697459680
effective search space used: 697459680
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)