TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0189.12
         (963 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG662087                                                              213  2e-55
TC18698                                                                75  5e-14
BI417841                                                               59  4e-09
AV410603                                                               52  4e-07
TC16320 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial ...    47  2e-05
TC18092                                                                32  0.37
TC19596                                                                31  0.82
TC11369 weakly similar to UP|BAC99695 (BAC99695) Brain protein 4...    28  5.3
BP028926                                                               28  5.3
AV773671                                                               28  6.9

>BG662087 
          Length = 373

 Score =  213 bits (541), Expect = 2e-55
 Identities = 102/120 (85%), Positives = 107/120 (89%)
 Frame = +1

Query: 237 NGKWRMCVDNTDLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQSDED 296
           +GKWRM VD TDLNK CPKDSYPLPSIDKLVDGA  NELLSLMDAYSGYHQIKMH SDED
Sbjct: 13  SGKWRMWVDYTDLNKACPKDSYPLPSIDKLVDGASDNELLSLMDAYSGYHQIKMHPSDED 192

Query: 297 KTTFMTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNH 356
           KT FMTARVNYCYQT+PFGLKNAGATYQ LMDRVF   VGRNMEVY+D+MIVKS L +NH
Sbjct: 193 KTAFMTARVNYCYQTIPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDNMIVKSALRANH 372


>TC18698 
          Length = 808

 Score = 75.1 bits (183), Expect = 5e-14
 Identities = 38/64 (59%), Positives = 44/64 (68%)
 Frame = -2

Query: 297 KTTFMTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNH 356
           KTT    RVNY YQ MP GLKN   TYQRLMD++F  Q+ +N+EVYV+DMIVKS     H
Sbjct: 801 KTTLKINRVNYYYQVMPLGLKNI*TTYQRLMDKIFHKQI*KNVEVYVEDMIVKSSQE*FH 622

Query: 357 HEDL 360
             DL
Sbjct: 621 RGDL 610


>BI417841 
          Length = 617

 Score = 58.9 bits (141), Expect = 4e-09
 Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 4/130 (3%)
 Frame = +1

Query: 622 DGSSNDNGSEAG----VTLQGPGELVLEQSLRFQFKTSNNQAEYEALIAGLKLAIEVQID 677
           DGSS  N   AG    +  +   ++ L + +  Q   +NNQAEY  LI GLK A E    
Sbjct: 151 DGSSKGNPGSAGAGAVLRAEDGSKVYLREGVGNQ---TNNQAEYRGLILGLKHAHEQGYQ 321

Query: 678 SLPVRTDSPLVANQVNGEFQVKELALIKYVERVRLLMGRLQQVVVEFVPRAQNQRADALA 737
            + V+ DS LV  QV G ++ +   +       + L  + Q   +  VPR  N  AD  A
Sbjct: 322 HINVKGDSQLVCKQVEGSWKARNPNIASLCNEAKELKSKFQSFDINHVPRQYNSEADVQA 501

Query: 738 KLASTRKPGN 747
            L      G+
Sbjct: 502 NLGVNLPAGH 531


>AV410603 
          Length = 162

 Score = 52.0 bits (123), Expect = 4e-07
 Identities = 22/48 (45%), Positives = 32/48 (65%)
 Frame = +1

Query: 255 KDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKTTFMT 302
           KDS+P+P++D+L+D   G++  S +D  SGYHQI +   D  KT F T
Sbjct: 10  KDSFPMPTVDELLDELRGSQFFSKLDLRSGYHQILVKPEDRHKTVFRT 153


>TC16320 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial (11%)
          Length = 632

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 27/91 (29%), Positives = 40/91 (43%)
 Frame = +2

Query: 661 YEALIAGLKLAIEVQIDSLPVRTDSPLVANQVNGEFQVKELALIKYVERVRLLMGRLQQV 720
           Y  LI GLK AI+     + V+ DS LV NQV G +++K   +       + L  +    
Sbjct: 2   YRGLILGLKHAIKEGYKHIQVKGDSMLVCNQVQGLWKIKNQNIASLCSEAKELKNKFLSF 181

Query: 721 VVEFVPRAQNQRADALAKLASTRKPGNNRSV 751
            +  +PR  N  AD  A    + + G    V
Sbjct: 182 KINHIPREYNSEADVQANFGISLRAGQVEEV 274


>TC18092 
          Length = 519

 Score = 32.3 bits (72), Expect = 0.37
 Identities = 18/35 (51%), Positives = 22/35 (62%)
 Frame = -2

Query: 242 MCVDNTDLNKTCPKDSYPLPSIDKLVDGALGNELL 276
           MCV  TD+NK CP+   PL SI+ LVD +   E L
Sbjct: 101 MCVC*TDINKDCPR--XPLTSINALVDYSSSYEYL 3


>TC19596 
          Length = 499

 Score = 31.2 bits (69), Expect = 0.82
 Identities = 27/86 (31%), Positives = 38/86 (43%), Gaps = 1/86 (1%)
 Frame = +1

Query: 658 QAEYEALIAGLKLAIEVQIDSLPVRTDS-PLVANQVNGEFQVKELALIKYVERVRLLMGR 716
           +AE  AL  GL L     +       D   +V    N  +Q   LA    +  +RLL+ R
Sbjct: 130 RAEIAALKHGLTLLWNAHVRRATCEVDCLDIVEALENDRYQFHALA--SELLDIRLLLDR 303

Query: 717 LQQVVVEFVPRAQNQRADALAKLAST 742
              V + +VPR  N  AD LA L ++
Sbjct: 304 DWTVTLAYVPREANAAADCLAGLGAS 381


>TC11369 weakly similar to UP|BAC99695 (BAC99695) Brain protein 44-like,
           partial (88%)
          Length = 753

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
 Frame = -3

Query: 551 R*K*ELTFL*DRCCRSQTFQEGSS-----RDQWSCRNMDCSMTKGGRS 593
           R  *++ FL    C     +EGSS     + +W     DCS T GGRS
Sbjct: 337 RSN*QIWFLVVSLCPLLPQEEGSS*R*DPKSEWFLDQWDCSKTSGGRS 194


>BP028926 
          Length = 390

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 866 KECAEFVRKCKKCQVFTDLPRAPP 889
           + C+  V  C+KC+V++ LPR  P
Sbjct: 103 ENCS*SVCNCQKCEVYSQLPRTKP 32


>AV773671 
          Length = 453

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 876 KKCQVFTDLPRAPPGQLVTISSPW 899
           KKC  FTD  RAP G  V++  P+
Sbjct: 254 KKCSFFTDCQRAPAGGDVSLPPPF 325


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.323    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,349,633
Number of Sequences: 28460
Number of extensions: 220293
Number of successful extensions: 841
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of query: 963
length of database: 4,897,600
effective HSP length: 99
effective length of query: 864
effective length of database: 2,080,060
effective search space: 1797171840
effective search space used: 1797171840
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)