BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0185.2
(122 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC10797 weakly similar to PIR|C86287|C86287 F9L1.24 protein - Ar... 96 1e-21
AV769427 94 7e-21
BP053178 79 2e-16
TC11222 75 4e-15
BP078300 70 1e-13
BP057617 44 8e-06
BP041056 40 1e-04
TC8172 similar to AAS10008 (AAS10008) MYB transcription factor, ... 28 0.44
AW720427 26 1.7
TC9480 weakly similar to UP|Q9AWT3 (Q9AWT3) Nucleoid DNA-binding... 26 2.2
BP042107 25 3.7
BP042369 25 3.7
AW719845 25 3.7
TC14860 similar to UP|TPIS_COPJA (P21820) Triosephosphate isomer... 25 4.8
TC15404 similar to UP|GSA_SOYBN (P45621) Glutamate-1-semialdehyd... 25 4.8
BP064688 25 4.8
BP057274 25 4.8
TC15417 similar to PIR|H96619|H96619 protein T30E16.17 [imported... 24 6.3
AV425659 24 6.3
TC7946 homologue to UP|EF2_BETVU (O23755) Elongation factor 2 (E... 24 8.3
>TC10797 weakly similar to PIR|C86287|C86287 F9L1.24 protein - Arabidopsis
thaliana {Arabidopsis thaliana;}, partial (10%)
Length = 657
Score = 96.3 bits (238), Expect = 1e-21
Identities = 44/85 (51%), Positives = 62/85 (72%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 KNELTKYLEDGLEER-GSLDILNWWKLNASRYPILASIARELLAIPISTVASESTFSAGG 61
K+EL +YLE+ L R D+L WWK+N +YP L+ +AR++L+IP+STV SES F
Sbjct: 51 KSELDQYLEESLLPRVPDFDVLGWWKINQVKYPTLSKMARDILSIPVSTVPSESFFDRKS 230
Query: 62 RVVDPYRSSLTPKTLEALICTQDWI 86
+ +D YRSSL P+ +EAL+CTQDW+
Sbjct: 231 QEMDQYRSSLRPEAVEALVCTQDWM 305
>AV769427
Length = 492
Score = 94.0 bits (232), Expect = 7e-21
Identities = 42/86 (48%), Positives = 63/86 (72%), Gaps = 1/86 (1%)
Frame = -1
Query: 3 KNELTKYLEDGLEERGS-LDILNWWKLNASRYPILASIARELLAIPISTVASESTFSAGG 61
K EL +YLE+ L R S D+L WWKLN +YP L+ +AR++LA+P+S+V ++S F
Sbjct: 432 KCELDQYLEESLLPRVSDFDVLGWWKLNKIKYPTLSKMARDILAVPVSSVPADSVFDTKS 253
Query: 62 RVVDPYRSSLTPKTLEALICTQDWIK 87
+ +D YRSSL P+T+EAL+C +DW++
Sbjct: 252 KEMDQYRSSLRPETVEALVCAKDWMQ 175
>BP053178
Length = 529
Score = 79.0 bits (193), Expect = 2e-16
Identities = 36/57 (63%), Positives = 46/57 (80%)
Frame = -1
Query: 32 RYPILASIARELLAIPISTVASESTFSAGGRVVDPYRSSLTPKTLEALICTQDWIKG 88
R P+L+ IAR++L IP+STVASES FS GGRV++ +RSSLTPK + ICT DW+KG
Sbjct: 529 RLPMLSRIARDILXIPVSTVASESAFSTGGRVLNDFRSSLTPKMADMSICTPDWMKG 359
>TC11222
Length = 557
Score = 74.7 bits (182), Expect = 4e-15
Identities = 39/71 (54%), Positives = 53/71 (73%), Gaps = 1/71 (1%)
Frame = +2
Query: 39 IARELLAIPISTVASESTFSAGGRVVDPYRSSLTPKTLEALICTQDWIK-GKYSKSLLSN 97
IA+++LA+P+STVASES FS GRV++ YRSSL+PKT+EAL+C Q+W + G S +
Sbjct: 5 IAKDVLAMPVSTVASESAFSTRGRVLNNYRSSLSPKTVEALVCAQNWFRSGPLSSDI--E 178
Query: 98 EEVMELEKYEQ 108
E + E EK EQ
Sbjct: 179 ELLEEFEKLEQ 211
>BP078300
Length = 401
Score = 69.7 bits (169), Expect = 1e-13
Identities = 33/51 (64%), Positives = 42/51 (81%)
Frame = -2
Query: 40 ARELLAIPISTVASESTFSAGGRVVDPYRSSLTPKTLEALICTQDWIKGKY 90
A ++LAIPISTVASESTFSA GRV++ YRS L +++EALIC DW++ KY
Sbjct: 400 AADILAIPISTVASESTFSA*GRVINEYRSKLNDESIEALICGGDWLRHKY 248
>BP057617
Length = 500
Score = 43.9 bits (102), Expect = 8e-06
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = -2
Query: 60 GGRVVDPYRSSLTPKTLEALICTQDWIKG 88
GGRV++ +RSSLTPK + ICT DW+KG
Sbjct: 496 GGRVLNDFRSSLTPKMADMSICTPDWMKG 410
>BP041056
Length = 298
Score = 40.0 bits (92), Expect = 1e-04
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = -2
Query: 62 RVVDPYRSSLTPKTLEALICTQDWIKGKYSKSLLSNEEV 100
R +D YRSSL TLEALICT+DW + + +SN+ V
Sbjct: 279 RKMDSYRSSLDSPTLEALICTKDWFRYESLPINVSNDLV 163
>TC8172 similar to AAS10008 (AAS10008) MYB transcription factor, partial
(30%)
Length = 1353
Score = 28.1 bits (61), Expect = 0.44
Identities = 15/25 (60%), Positives = 15/25 (60%)
Frame = +2
Query: 49 STVASESTFSAGGRVVDPYRSSLTP 73
STVAS ST A GR RSSL P
Sbjct: 146 STVASRSTAPASGRTSSKIRSSLLP 220
>AW720427
Length = 548
Score = 26.2 bits (56), Expect = 1.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 20 LDILNWWKLNASRYPILASIARELLAIPISTV 51
L +L WWK + +P LA + E+ A+ I ++
Sbjct: 313 LRLLQWWKSISKPFPCLALVELEIPAVFIHSL 408
>TC9480 weakly similar to UP|Q9AWT3 (Q9AWT3) Nucleoid DNA-binding protein
cnd41-like protein, partial (33%)
Length = 716
Score = 25.8 bits (55), Expect = 2.2
Identities = 19/54 (35%), Positives = 27/54 (49%), Gaps = 7/54 (12%)
Frame = -1
Query: 28 LNASRYPILASIARELLAIPISTV------ASESTFSAG-GRVVDPYRSSLTPK 74
LNASR S+ + A+P ST+ AS S ++G GR P S + P+
Sbjct: 218 LNASRSSSYTSLRNRVTAVPESTMIPPSPTASTSKLASGIGRTSPPTLSPVRPR 57
>BP042107
Length = 515
Score = 25.0 bits (53), Expect = 3.7
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Frame = +1
Query: 31 SRYPILAS--IARELLAIPISTVASESTFSAGGRVVDPYRSSLTPKTLEALICTQDWIKG 88
+R+PIL++ ++P S + S R++ + TP +E + +K
Sbjct: 127 TRFPILSNPTFLPSFHSVPHSFHNVDDAVSFFNRMLQMHP---TPSIIEFSMILTSLVKM 297
Query: 89 KYSKSLLSNEEVMELEKYEQGIITNYV**YVYCY 122
K+ + +S MEL+ I+T+ + YC+
Sbjct: 298 KHYSTAISLSHQMELKGIRPDIVTSSILINCYCH 399
>BP042369
Length = 459
Score = 25.0 bits (53), Expect = 3.7
Identities = 13/44 (29%), Positives = 22/44 (49%), Gaps = 1/44 (2%)
Frame = -1
Query: 58 SAGGRVVDPYRSSLTPKTLEALICTQD-WIKGKYSKSLLSNEEV 100
SAG +V+DP + P+ + L+ + W G S+ L E+
Sbjct: 345 SAGTQVLDPILKIMLPRFMSQLVKDYEAWASGDTSRQPLGTGEI 214
>AW719845
Length = 209
Score = 25.0 bits (53), Expect = 3.7
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +3
Query: 36 LASIARELLAIPISTVASESTFSAGGRVVDPYRSSLTPKTLEALICTQDWIKGKYSKSLL 95
L+ + ELL +S VA GG L TL A++C IKGK+ +++L
Sbjct: 3 LSKLKMELLKDGVSVVA---VTGLGG---------LGKTTLAAMVCWDKQIKGKFRENIL 146
>TC14860 similar to UP|TPIS_COPJA (P21820) Triosephosphate isomerase,
cytosolic (TIM) , partial (68%)
Length = 917
Score = 24.6 bits (52), Expect = 4.8
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -1
Query: 51 VASESTFSAGGRVVDPYRSSLTPKTLEALICTQDWIKGKYSKSLLSNEEVMEL 103
VA+ FSA G VV S+ KTL L+ W+ KS++SN ++ L
Sbjct: 428 VATNEEFSAHGFVVVVSISTRN*KTLLLLLLLLFWL--LLRKSIMSNTVLLHL 276
>TC15404 similar to UP|GSA_SOYBN (P45621) Glutamate-1-semialdehyde
2,1-aminomutase, chloroplast precursor (GSA)
(Glutamate-1-semialdehyde aminotransferase) (GSA-AT) ,
partial (39%)
Length = 801
Score = 24.6 bits (52), Expect = 4.8
Identities = 10/24 (41%), Positives = 13/24 (53%)
Frame = -3
Query: 70 SLTPKTLEALICTQDWIKGKYSKS 93
SL P +C Q W KG +S+S
Sbjct: 223 SLAP*YASEFVCQQSWPKGYHSRS 152
>BP064688
Length = 484
Score = 24.6 bits (52), Expect = 4.8
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -3
Query: 33 YPILASIARELLAIPISTVASESTFSA 59
Y ++ + R ++ +P+ST +E +FSA
Sbjct: 350 YYLIDRLLRLVMTLPVSTATTERSFSA 270
>BP057274
Length = 499
Score = 24.6 bits (52), Expect = 4.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 46 IPISTVASESTFSAGGRVVDPY 67
+P++ + FS GGRVVD Y
Sbjct: 241 VPVTQKFQVTGFSVGGRVVDGY 306
>TC15417 similar to PIR|H96619|H96619 protein T30E16.17 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(4%)
Length = 531
Score = 24.3 bits (51), Expect = 6.3
Identities = 9/22 (40%), Positives = 15/22 (67%)
Frame = -2
Query: 25 WWKLNASRYPILASIARELLAI 46
WWK++ + ASI+REL+ +
Sbjct: 221 WWKVSTLVENLKASISRELITL 156
>AV425659
Length = 258
Score = 24.3 bits (51), Expect = 6.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 61 GRVVDPYRSSLTPKTLEALI 80
GR D +R+ ++PKTLE ++
Sbjct: 89 GRSSDDHRARVSPKTLEMMV 30
>TC7946 homologue to UP|EF2_BETVU (O23755) Elongation factor 2 (EF-2),
partial (34%)
Length = 1009
Score = 23.9 bits (50), Expect = 8.3
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +1
Query: 14 LEERGSLDILNWWKLNASRYPILAS 38
L GSL + WWK P++ S
Sbjct: 475 LPNPGSLSLFTWWKSRLLSKPLVVS 549
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.323 0.139 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,016,842
Number of Sequences: 28460
Number of extensions: 22723
Number of successful extensions: 130
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of query: 122
length of database: 4,897,600
effective HSP length: 79
effective length of query: 43
effective length of database: 2,649,260
effective search space: 113918180
effective search space used: 113918180
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)
Lotus: description of TM0185.2