BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0182.2
(334 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC9883 homologue to UP|AOX2_SOYBN (Q41266) Alternative oxidase 2... 399 e-112
TC15778 homologue to UP|AOX2_SOYBN (Q41266) Alternative oxidase ... 248 1e-66
TC11909 weakly similar to GB|AAP68250.1|31711788|BT008811 At3g23... 88 1e-26
BP036173 30 0.74
BP048861 30 0.74
TC9175 weakly similar to UP|INAD_DROME (Q24008) Inactivation-no-... 29 0.97
BP066835 29 0.97
TC14848 weakly similar to UP|Q9ZW71 (Q9ZW71) At2g43240 protein, ... 28 2.8
TC16816 homologue to GB|AAD00118.1|4097583|NTU64924 NTGP3 {Nicot... 28 2.8
TC10568 similar to UP|Q84MM3 (Q84MM3) Lethal leaf spot 1-like pr... 27 4.8
TC9934 similar to UP|BAC98494 (BAC98494) AG-motif binding protei... 27 4.8
TC16023 27 6.3
TC17855 27 6.3
>TC9883 homologue to UP|AOX2_SOYBN (Q41266) Alternative oxidase 2,
mitochondrial precursor , partial (34%)
Length = 665
Score = 399 bits (1024), Expect = e-112
Identities = 192/192 (100%), Positives = 192/192 (100%)
Frame = +1
Query: 1 MKHLALSYALRRALNCNRHGLTAVRQLPATEVRRFLVSGENGVFSCWNRMMSSQAAPEEE 60
MKHLALSYALRRALNCNRHGLTAVRQLPATEVRRFLVSGENGVFSCWNRMMSSQAAPEEE
Sbjct: 88 MKHLALSYALRRALNCNRHGLTAVRQLPATEVRRFLVSGENGVFSCWNRMMSSQAAPEEE 267
Query: 61 KKEEKAEKESLRTEAKKNDGSVVVSSYWGISRPKITREDGTEWPWNCFMPWETYRPDLSI 120
KKEEKAEKESLRTEAKKNDGSVVVSSYWGISRPKITREDGTEWPWNCFMPWETYRPDLSI
Sbjct: 268 KKEEKAEKESLRTEAKKNDGSVVVSSYWGISRPKITREDGTEWPWNCFMPWETYRPDLSI 447
Query: 121 DLTKHHVPKNFLDKVAYRTVKLLRIPTDVFFQRRYGCRAMMLETVAAVPGMVGGMLLHLR 180
DLTKHHVPKNFLDKVAYRTVKLLRIPTDVFFQRRYGCRAMMLETVAAVPGMVGGMLLHLR
Sbjct: 448 DLTKHHVPKNFLDKVAYRTVKLLRIPTDVFFQRRYGCRAMMLETVAAVPGMVGGMLLHLR 627
Query: 181 SLRKFQQSGGWI 192
SLRKFQQSGGWI
Sbjct: 628 SLRKFQQSGGWI 663
>TC15778 homologue to UP|AOX2_SOYBN (Q41266) Alternative oxidase 2,
mitochondrial precursor , partial (36%)
Length = 538
Score = 248 bits (632), Expect = 1e-66
Identities = 119/119 (100%), Positives = 119/119 (100%)
Frame = +3
Query: 216 KWYERFLVLTVQGVFFNAFFVLYLLSPKVAHRVVGYLEEEAIHSYTEYLKDIESGAIENV 275
KWYERFLVLTVQGVFFNAFFVLYLLSPKVAHRVVGYLEEEAIHSYTEYLKDIESGAIENV
Sbjct: 3 KWYERFLVLTVQGVFFNAFFVLYLLSPKVAHRVVGYLEEEAIHSYTEYLKDIESGAIENV 182
Query: 276 PAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIHFHGKELREAPAPLGYH 334
PAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIHFHGKELREAPAPLGYH
Sbjct: 183 PAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIHFHGKELREAPAPLGYH 359
>TC11909 weakly similar to GB|AAP68250.1|31711788|BT008811 At3g23640
{Arabidopsis thaliana;}, partial (10%)
Length = 829
Score = 88.2 bits (217), Expect(2) = 1e-26
Identities = 38/58 (65%), Positives = 51/58 (87%)
Frame = -2
Query: 258 HSYTEYLKDIESGAIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFAS 315
+SYTE+LK+++ G IEN PAPAIA+DY +LP ++TL+D + V+RA+EAHHRDVNHFAS
Sbjct: 717 NSYTEFLKEMDKGKIENAPAPAIALDY*QLPPNSTLRDAVMVVRANEAHHRDVNHFAS 544
Score = 47.8 bits (112), Expect(2) = 1e-26
Identities = 22/29 (75%), Positives = 25/29 (85%)
Frame = -3
Query: 229 VFFNAFFVLYLLSPKVAHRVVGYLEEEAI 257
VFFN +F+ YLLSPK AHR VG+LEEEAI
Sbjct: 803 VFFNTYFLGYLLSPKFAHREVGHLEEEAI 717
>BP036173
Length = 599
Score = 29.6 bits (65), Expect = 0.74
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Frame = -3
Query: 45 SCWNRMMSSQ----AAPEEEKKEEKA-EKESLRTEAKKNDGSVVV 84
S W+ MS Q + E KKE A +E + E KKNDG++VV
Sbjct: 222 SFWSNPMSDQGFLGSGEVELKKEALAWREERCKQEVKKNDGTIVV 88
>BP048861
Length = 551
Score = 29.6 bits (65), Expect = 0.74
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 260 YTEYLKDIESGAIENVPAPAIAIDYWRLPKDATLKDVI 297
YTEY D+ SG + ++YW +PK A K ++
Sbjct: 468 YTEYFFDVPSGKV------CRHVEYWNVPKMALFKQIL 373
>TC9175 weakly similar to UP|INAD_DROME (Q24008)
Inactivation-no-after-potential D protein, partial (5%)
Length = 692
Score = 29.3 bits (64), Expect = 0.97
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 56 APEEEKKEEKAEKESLRTEAKKNDG 80
A EE K EEK E+E EAKK +G
Sbjct: 110 AAEEGKPEEKKEEEKAAEEAKKEEG 184
Score = 27.7 bits (60), Expect = 2.8
Identities = 13/30 (43%), Positives = 21/30 (69%), Gaps = 2/30 (6%)
Frame = +2
Query: 52 SSQAAPEEEKKEEKAEKESLRTEA--KKND 79
+ + PEE+K+EEKA +E+ + E +KND
Sbjct: 113 AEEGKPEEKKEEEKAAEEAKKEEGGEEKND 202
>BP066835
Length = 452
Score = 29.3 bits (64), Expect = 0.97
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -2
Query: 321 GKELREAPAPLGYH 334
G+ELREA AP+GYH
Sbjct: 226 GRELREASAPIGYH 185
>TC14848 weakly similar to UP|Q9ZW71 (Q9ZW71) At2g43240 protein, partial
(5%)
Length = 691
Score = 27.7 bits (60), Expect = 2.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 212 LVQPKWYERFLVLTVQGVFFNAFFVLYLLSPKVAHRVVGY 251
LV P +Y FLV +Q V N F+LY+ + ++ Y
Sbjct: 443 LVSPFYYFCFLVYLLQPVLSNIVFILYMYYMILVFHLLSY 562
>TC16816 homologue to GB|AAD00118.1|4097583|NTU64924 NTGP3 {Nicotiana
tabacum;}, partial (16%)
Length = 468
Score = 27.7 bits (60), Expect = 2.8
Identities = 12/17 (70%), Positives = 14/17 (81%)
Frame = +3
Query: 52 SSQAAPEEEKKEEKAEK 68
SS +APEEE+KEEK K
Sbjct: 27 SSSSAPEEEEKEEKGAK 77
>TC10568 similar to UP|Q84MM3 (Q84MM3) Lethal leaf spot 1-like protein,
partial (28%)
Length = 742
Score = 26.9 bits (58), Expect = 4.8
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -1
Query: 218 YERFLVLTVQGVFFNAFFVLYLLSPKVAHRVVGYLEEEAIHSYT 261
Y + V+ V G+ +FF LYL+ + R + L ++ I++YT
Sbjct: 643 YSLYFVVIVNGILKPSFFSLYLI---ITPR*IRTLNKKDIYTYT 521
>TC9934 similar to UP|BAC98494 (BAC98494) AG-motif binding protein-4,
partial (37%)
Length = 1050
Score = 26.9 bits (58), Expect = 4.8
Identities = 15/47 (31%), Positives = 19/47 (39%)
Frame = -2
Query: 63 EEKAEKESLRTEAKKNDGSVVVSSYWGISRPKITREDGTEWPWNCFM 109
EEKA E+ R K G I R K + W WNC++
Sbjct: 305 EEKALGENRRQSEKPTPGPPHHQPEPPIRRQKWSHSHRRRWNWNCYL 165
>TC16023
Length = 894
Score = 26.6 bits (57), Expect = 6.3
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = +2
Query: 176 LLHLRSLRKFQQSGGWIKALLEEAENERM-----HLMTMV 210
+L LR + SGGW+ A+LE + R+ +L+T+V
Sbjct: 572 MLKLRCRSMVRSSGGWVDAVLEAPPSPRVAPSGYYLLTVV 691
>TC17855
Length = 543
Score = 26.6 bits (57), Expect = 6.3
Identities = 11/19 (57%), Positives = 12/19 (62%)
Frame = -3
Query: 119 SIDLTKHHVPKNFLDKVAY 137
SIDL HH NFLD +Y
Sbjct: 58 SIDLFHHHCMNNFLDHASY 2
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.136 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,991,672
Number of Sequences: 28460
Number of extensions: 76694
Number of successful extensions: 496
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of query: 334
length of database: 4,897,600
effective HSP length: 91
effective length of query: 243
effective length of database: 2,307,740
effective search space: 560780820
effective search space used: 560780820
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0182.2