BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0181.18
(485 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW720246 200 5e-52
AV428014 199 1e-51
BG662238 153 7e-38
AV767186 150 4e-37
BP057409 147 4e-36
AV779312 134 3e-32
AV418629 120 5e-28
BG662182 102 1e-22
BI418749 102 1e-22
AU251655 98 3e-21
TC11479 57 7e-09
BP047422 51 4e-07
TC16739 similar to UP|P92961 (P92961) Proline transporter 1, par... 50 1e-06
BF177486 50 1e-06
TC18829 homologue to UP|Q8L4X4 (Q8L4X4) Amino acid permease-like... 47 7e-06
BP032689 45 3e-05
BP064494 43 1e-04
TC16422 similar to PIR|T05653|T05653 amino acid transport protei... 41 5e-04
TC18534 similar to UP|Q8L431 (Q8L431) Proline transport protein-... 40 9e-04
TC17095 similar to UP|Q9FMC0 (Q9FMC0) Amino acid transporter-lik... 37 0.007
>AW720246
Length = 445
Score = 200 bits (508), Expect = 5e-52
Identities = 95/141 (67%), Positives = 112/141 (79%)
Frame = +3
Query: 27 QGGSKCFDDDGRLKRTGTVWTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVMILFSLV 86
Q SK +DDDGRLKRTG VWT S+HIITAV+GSGVLSLAW+IAQ+GW+AGP VMI FS+V
Sbjct: 18 QTDSKFYDDDGRLKRTGNVWTTSSHIITAVVGSGVLSLAWSIAQMGWIAGPGVMIFFSVV 197
Query: 87 TYYTSILLCACYRNGDPVNGKRNYTYMDVVHSNMGGIQVKLCGIVQYLNLFGVAIGYTIA 146
YTS +L CYR GD GKRNYT+MD V + +GG V +CGIVQYLNLFG AIGYTIA
Sbjct: 198 ALYTSSILAECYRCGDSHFGKRNYTFMDAVQNILGGFSVTICGIVQYLNLFGSAIGYTIA 377
Query: 147 SSISMIAIERSNCFHKSEGKD 167
+S+S+I I +S C H S G+D
Sbjct: 378 ASMSLIEIRKSFCLHSSGGED 440
>AV428014
Length = 428
Score = 199 bits (505), Expect = 1e-51
Identities = 94/137 (68%), Positives = 114/137 (82%)
Frame = +3
Query: 33 FDDDGRLKRTGTVWTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVMILFSLVTYYTSI 92
FDDDGR KRTGT TASAHIITAVIGSGVLSLAWAIAQ+GWVAGPAV++ FS +TY+TS
Sbjct: 6 FDDDGRDKRTGTWVTASAHIITAVIGSGVLSLAWAIAQMGWVAGPAVLLAFSFITYFTST 185
Query: 93 LLCACYRNGDPVNGKRNYTYMDVVHSNMGGIQVKLCGIVQYLNLFGVAIGYTIASSISMI 152
LL CYR+ DPV+GKRNYTY +VV + +GG + +LCG+ QY+NL GV IGYTI +SIS++
Sbjct: 186 LLADCYRSPDPVHGKRNYTYSEVVRAVLGGRKFQLCGLAQYVNLVGVTIGYTITASISIV 365
Query: 153 AIERSNCFHKSEGKDPC 169
A++RSNCFHK + C
Sbjct: 366 AVKRSNCFHKHGHQASC 416
>BG662238
Length = 354
Score = 153 bits (386), Expect = 7e-38
Identities = 72/102 (70%), Positives = 85/102 (82%)
Frame = +3
Query: 184 EIVLSQIPDFDQLWWLSILAAVMSFTYSTIGLGLGFGKVIENGAVGGSLTGITVGTVTQT 243
+I SQIPDF Q WWLSILAA+MSFTYS I L LG K+ ENG + GSLTG+++GTVT+
Sbjct: 15 QIFFSQIPDFHQTWWLSILAAIMSFTYSLISLYLGITKIAENGTIKGSLTGVSIGTVTKA 194
Query: 244 QKVWRTLQALGDIAFAYSYSMILIEIQDTVKSPPSESKTMKK 285
+KVW T QALGDIAFAYS+S ILIEIQDT+K+PP E+KTMKK
Sbjct: 195 EKVWGTFQALGDIAFAYSFSQILIEIQDTIKNPPCEAKTMKK 320
>AV767186
Length = 415
Score = 150 bits (379), Expect = 4e-37
Identities = 67/91 (73%), Positives = 82/91 (89%)
Frame = -1
Query: 395 FVIITTLISMLLPFFNDIVGLLGALGFWPLTVYFPVEMYIIQKRIPKWSIKWICFQLFSL 454
FVI+TT++SMLLPFFNDIVG++GALGFWPLTVYFPVEMYI Q++IPKWS +WIC Q+FS
Sbjct: 415 FVILTTVLSMLLPFFNDIVGVIGALGFWPLTVYFPVEMYIAQRKIPKWSSRWICLQVFSG 236
Query: 455 ACLIVTVAAAAGSVAGIFLDLQVYKPFKAIY 485
ACL+V+V AA GSVAG+ LDL+ YKPF++ Y
Sbjct: 235 ACLVVSVVAAVGSVAGVLLDLKKYKPFQSNY 143
>BP057409
Length = 477
Score = 147 bits (371), Expect = 4e-36
Identities = 66/95 (69%), Positives = 81/95 (84%)
Frame = -3
Query: 387 FRLVWRTIFVIITTLISMLLPFFNDIVGLLGALGFWPLTVYFPVEMYIIQKRIPKWSIKW 446
FRLVWRT+FVI TT I+ML+PFFND++G+LG+L FWPLTVYFPVEMYI QK+IPKWS W
Sbjct: 475 FRLVWRTLFVISTTFIAMLIPFFNDVLGILGSLNFWPLTVYFPVEMYIKQKKIPKWSRAW 296
Query: 447 ICFQLFSLACLIVTVAAAAGSVAGIFLDLQVYKPF 481
I Q+ S+ CL+V+V +A GSVA + LDL+VYKPF
Sbjct: 295 IGLQIISVVCLVVSVMSAIGSVASVALDLKVYKPF 191
>AV779312
Length = 345
Score = 134 bits (337), Expect = 3e-32
Identities = 63/93 (67%), Positives = 76/93 (80%)
Frame = +3
Query: 30 SKCFDDDGRLKRTGTVWTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVMILFSLVTYY 89
S DDDGR KRTGTVWTA AHIITAVIG+GVLSLAWA+AQLGW+ G + +++F+ VT Y
Sbjct: 63 SVLLDDDGRPKRTGTVWTACAHIITAVIGAGVLSLAWAMAQLGWILGVSCILIFAGVTLY 242
Query: 90 TSILLCACYRNGDPVNGKRNYTYMDVVHSNMGG 122
TS LL CYR+ DPV GKRNYTYM+ V +++GG
Sbjct: 243 TSNLLADCYRSPDPVTGKRNYTYMEAVKTHLGG 341
>AV418629
Length = 385
Score = 120 bits (301), Expect = 5e-28
Identities = 60/80 (75%), Positives = 65/80 (81%), Gaps = 2/80 (2%)
Frame = +3
Query: 14 HHQAFDVSLDMQQQGG--SKCFDDDGRLKRTGTVWTASAHIITAVIGSGVLSLAWAIAQL 71
H+Q D+ SKC+DDDGRLKRTG VWTAS+HIITAVIGSGVLSLAWAIAQL
Sbjct: 138 HNQGLDIEGSRVDGSSHPSKCYDDDGRLKRTGNVWTASSHIITAVIGSGVLSLAWAIAQL 317
Query: 72 GWVAGPAVMILFSLVTYYTS 91
GWVAGPAVM+LFSLVT YTS
Sbjct: 318 GWVAGPAVMLLFSLVTVYTS 377
>BG662182
Length = 225
Score = 102 bits (254), Expect = 1e-22
Identities = 44/62 (70%), Positives = 56/62 (89%)
Frame = +3
Query: 381 AYKINLFRLVWRTIFVIITTLISMLLPFFNDIVGLLGALGFWPLTVYFPVEMYIIQKRIP 440
+Y N+F LV R++FVIITTLI+ML+PFFND++G++GALGFWPLTVYFP EMYII K+IP
Sbjct: 39 SYNQNIFMLVSRSVFVIITTLIAMLIPFFNDVLGVIGALGFWPLTVYFPSEMYIIPKKIP 218
Query: 441 KW 442
+W
Sbjct: 219 RW 224
>BI418749
Length = 541
Score = 102 bits (254), Expect = 1e-22
Identities = 49/84 (58%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
Frame = +2
Query: 39 LKRTGTVWTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVMILFSLVTYYTSILLCACY 98
LKRTGTVWTA AHI+T VIGSGVLSL W+IAQLGW+AGP +++ + T +++ LLC Y
Sbjct: 287 LKRTGTVWTAVAHIVTGVIGSGVLSLPWSIAQLGWLAGPFSILIIASCTLFSAFLLCDTY 466
Query: 99 RNGDPVNG-KRNYTYMDVVHSNMG 121
R+ DP G R+ +Y+DVV+ N+G
Sbjct: 467 RSPDPEYGPDRSASYLDVVNLNIG 538
>AU251655
Length = 397
Score = 97.8 bits (242), Expect = 3e-21
Identities = 53/107 (49%), Positives = 69/107 (63%), Gaps = 10/107 (9%)
Frame = +3
Query: 7 NGSKNNHHHQ------AFDVS-LDMQQQGGSKCF---DDDGRLKRTGTVWTASAHIITAV 56
+ KNNH +Q AFD M + G S F D G +KRTGTVWTA AHI+T V
Sbjct: 72 DNEKNNHGNQQLNPVFAFDQKEAAMSEAGDSAPFLQNADSGDVKRTGTVWTAVAHIVTGV 251
Query: 57 IGSGVLSLAWAIAQLGWVAGPAVMILFSLVTYYTSILLCACYRNGDP 103
IGSGVLSLAW+IAQ+GW+ GP ++LF+ +T +++ LL YR+ P
Sbjct: 252 IGSGVLSLAWSIAQIGWIGGPLAILLFASITLFSAFLLSDTYRSPCP 392
>TC11479
Length = 597
Score = 57.0 bits (136), Expect = 7e-09
Identities = 23/62 (37%), Positives = 36/62 (57%)
Frame = +2
Query: 410 NDIVGLLGALGFWPLTVYFPVEMYIIQKRIPKWSIKWICFQLFSLACLIVTVAAAAGSVA 469
N I+G+LG++ FWP T+YFPV +Y+ + W+ KWI + FS+ + G +
Sbjct: 2 NQILGVLGSISFWPFTIYFPVALYLSRSSTDAWTAKWIMLRTFSIFGFGFGLFTLIGCIR 181
Query: 470 GI 471
GI
Sbjct: 182 GI 187
>BP047422
Length = 516
Score = 51.2 bits (121), Expect = 4e-07
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 4/160 (2%)
Frame = -1
Query: 326 PFWLIDIANAAIVIHLVGAYQVYSQPLFAFVENYAAEKFPDSDFVTKTVQIPLFNAYKIN 385
P W +AN + V A +++ P++ +++ K A+K
Sbjct: 507 PVW*QXMANVTAFLQSVIALHIFASPMYEYLDTKHGIKGSAL-------------AFKNL 367
Query: 386 LFRLVWRTIFVIITTLISMLLPFFNDIVGLLGALGFWPLTVYFPVEMYIIQKRIPKWSIK 445
FR++ R ++ + T +S LLPF D + L GA+ +PLT MY+ S++
Sbjct: 366 SFRILVRGGYLTLNTFVSALLPFLGDFMSLTGAISTFPLTFILANHMYLGANMNKLTSVQ 187
Query: 446 ----WICFQLFSLACLIVTVAAAAGSVAGIFLDLQVYKPF 481
WI F I++VAA S+ I D Q Y F
Sbjct: 186 KLWHWINIWFFG----IMSVAATIASLRLIASDSQTYHFF 79
>TC16739 similar to UP|P92961 (P92961) Proline transporter 1, partial (33%)
Length = 616
Score = 49.7 bits (117), Expect = 1e-06
Identities = 40/158 (25%), Positives = 70/158 (43%), Gaps = 4/158 (2%)
Frame = +2
Query: 328 WLIDIANAAIVIHLVGAYQVYSQPLFAFVENYAAEKFPDSDFVTKTVQIPLFNAYKINLF 387
W+ + N + V A +++ P++ ++ D+ F K + + N F
Sbjct: 5 WVKAVPNITAFLQAVIALHIFASPMYEYL---------DTKFGIKGSAMKVKNLS----F 145
Query: 388 RLVWRTIFVIITTLISMLLPFFNDIVGLLGALGFWPLTVYFPVEMYIIQKRIPKWSIK-- 445
R+ R ++ T +S LLPF D + L GA+ +PLT MY+ K+ + +
Sbjct: 146 RITVRGGYLAFHTFVSALLPFLGDFMSLTGAISTFPLTFILANHMYLEAKKDKLTNFQKL 325
Query: 446 --WICFQLFSLACLIVTVAAAAGSVAGIFLDLQVYKPF 481
WI FSL ++VAA ++ I +D + Y F
Sbjct: 326 WHWINIIFFSL----MSVAATVSALRLISVDSKTYHIF 427
>BF177486
Length = 333
Score = 49.7 bits (117), Expect = 1e-06
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +1
Query: 372 KTVQIPLFNAYKINLFRLVWRTIFVIITTLISMLLPFFNDIVGLLGALGFWPLTVYFPVE 431
+TV + + + R + R ++V T +++ PFF ++G G F P T + P
Sbjct: 34 ETVMVKKLHFKPTRILRFIVRNLYVAFTMFLAITFPFFGGLLGFFGGFAFAPTTYFLPCV 213
Query: 432 MYIIQKRIPK----WSIKWICFQL 451
M++ K+ K W WIC L
Sbjct: 214 MWLAIKKPRKYSLSWCTNWICIVL 285
>TC18829 homologue to UP|Q8L4X4 (Q8L4X4) Amino acid permease-like protein,
partial (27%)
Length = 713
Score = 47.0 bits (110), Expect = 7e-06
Identities = 23/83 (27%), Positives = 43/83 (51%)
Frame = +1
Query: 39 LKRTGTVWTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVMILFSLVTYYTSILLCACY 98
L+ G W A H+ TA++G +L+L +A LGWV G + + VT+Y L+
Sbjct: 163 LQSKGQWWHAGFHLTTAIVGPTILTLPYAFRGLGWVLGFVCLTVMGAVTFYAYFLMSKVL 342
Query: 99 RNGDPVNGKRNYTYMDVVHSNMG 121
+ + +G+R+ + ++ +G
Sbjct: 343 EHCEK-SGRRHIRFRELAADVLG 408
>BP032689
Length = 472
Score = 44.7 bits (104), Expect = 3e-05
Identities = 17/75 (22%), Positives = 36/75 (47%)
Frame = -1
Query: 407 PFFNDIVGLLGALGFWPLTVYFPVEMYIIQKRIPKWSIKWICFQLFSLACLIVTVAAAAG 466
PFF ++G G L F + P +++ K+ +WS W + ++ +++ + A G
Sbjct: 472 PFFGGLLGFFGGLAFTSTSYILPCVLWLGAKKPKRWSFHWTASLICTIVGILIAIVAPIG 293
Query: 467 SVAGIFLDLQVYKPF 481
+ I + + Y+ F
Sbjct: 292 GIRTIIVSAKTYRMF 248
>BP064494
Length = 354
Score = 42.7 bits (99), Expect = 1e-04
Identities = 22/69 (31%), Positives = 38/69 (54%), Gaps = 2/69 (2%)
Frame = +3
Query: 252 ALGDIAFAYSYSMILIEIQDTVKSPPSE--SKTMKKASFISVVVTTLFYMLCGCFGYAAF 309
A+G++AF+Y+ +++EIQ T+ S P + K M K ++ + Y+ GY F
Sbjct: 141 AMGEVAFSYAGHNVVLEIQATMPSTPEKPSKKPMWKGVVVAYIGVAFCYLPVAFIGYYVF 320
Query: 310 GDSSPGNLL 318
G+S N+L
Sbjct: 321 GNSVDDNIL 347
>TC16422 similar to PIR|T05653|T05653 amino acid transport protein homolog
F22I13.20 - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (38%)
Length = 685
Score = 40.8 bits (94), Expect = 5e-04
Identities = 17/57 (29%), Positives = 33/57 (57%)
Frame = +2
Query: 50 AHIITAVIGSGVLSLAWAIAQLGWVAGPAVMILFSLVTYYTSILLCACYRNGDPVNG 106
A+I +++G+GVL L + + GW+ G ++ + +TY+ +LL + R D + G
Sbjct: 203 ANIFISIVGAGVLGLPYCFKRTGWLTGLIMLFTVAFLTYHCMMLLVSTRRKLDSLTG 373
>TC18534 similar to UP|Q8L431 (Q8L431) Proline transport protein-like,
partial (10%)
Length = 906
Score = 40.0 bits (92), Expect = 9e-04
Identities = 34/102 (33%), Positives = 48/102 (46%), Gaps = 5/102 (4%)
Frame = -3
Query: 385 NLFRL-VWRTIFVIITTLISMLLPFFNDIVGLLGALGFWPLTVYFPVEMYIIQK----RI 439
NL RL + R F TL++ PF D V LLG+ PLT FP ++I K R
Sbjct: 514 NLRRLFLIRAFFFSGNTLVAAAFPFMGDFVNLLGSFTLVPLTFMFPSMVFIKVKGKTARA 335
Query: 440 PKWSIKWICFQLFSLACLIVTVAAAAGSVAGIFLDLQVYKPF 481
K + W +FS ++T+A +V I +Q+Y F
Sbjct: 334 EKKAWHWFNI-VFS---FMLTIATTISAVRLIVNXIQIYHLF 221
>TC17095 similar to UP|Q9FMC0 (Q9FMC0) Amino acid transporter-like protein,
partial (17%)
Length = 751
Score = 37.0 bits (84), Expect = 0.007
Identities = 23/73 (31%), Positives = 38/73 (51%)
Frame = +2
Query: 33 FDDDGRLKRTGTVWTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVMILFSLVTYYTSI 92
FDD +G V+ S T +IG+G+++L + QLG + G ++L +L+T +
Sbjct: 494 FDDFNGASFSGAVFNLS----TTIIGAGIMALPATLKQLGMIPGLLAIVLMALLTEKSIE 661
Query: 93 LLCACYRNGDPVN 105
LL R G V+
Sbjct: 662 LLLRFTRAGKAVS 700
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.326 0.141 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,367,555
Number of Sequences: 28460
Number of extensions: 136468
Number of successful extensions: 1039
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of query: 485
length of database: 4,897,600
effective HSP length: 94
effective length of query: 391
effective length of database: 2,222,360
effective search space: 868942760
effective search space used: 868942760
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0181.18